Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g43990 | OGI:01108400 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:25211045-25212302 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGATTACAGTCTCCTAAAGGATGTCACACAGGAATCACACCGTTGGCGCGTACGAGTGCGGGCAACCCGCTTCTCGGAGTTCACCATAGCTAATGAGCCTGACAAGATTTTGCGCCTTGATTTAGTCCTGCTTGATGAGCAGGTATAGCACTGAGTACATGCTTTCTTTCTCTGCACACTATTTGCCTCCGCACACTCTTACATATTGAAACATCAACAGGGAGACATGATGGATGCGCAAATCCCAAGATGCCATGTTGATTAGTTCAAGCCTTTGCTAAAGGAAGGCGCTGTGTATTACATCAAATACTTCGAAGTCGCCGAGGCACGCCCCCAGTATAGGCCTGTTGATCGGCTGTTGATGGCAAAGTTCACTGCTCACACAACCGTTATAGAAGATACTAGACCACCATCCACGTTCCCATCTTATGCCTGCAAAATTCTTTCTTTTGATGAACTCAGAGCTCGGGCTTACAAGAAAGATATTCTTTCAGGTAAGTCTCCTTGGCCCAGATCAATCTATATTATTGCTTATTAATCTTCTCCATTTCTAGCTTGCTGCCCTCATTTACTCATATATAGTTTTCCTCCCTCATATTCCCATGTAGATGCTATAGGCATAATGACAACCATCGGGCCAAAGCAGACTGTTTCTTGTGCAGGTGTTATGAAAGTTGTGCTTAATGTCCATATAACCAATGGAAGGTATGTGCGTATCGATACGTTACCATTCCAAACATATTGGGAAAATTGGAACCATGCCATTATAATTTTGCAAAATTTGAGATATGCCATCTTGACCCACATGTCATTGACTCATGTGGGTCCTACACGTCATTGAGATACCGATGGCATATCTCAAACTTTGCAAAATTATAATGACATGGTTCCAAATTACCCAAACATATTTCTGTTCTGGGTGAGTGAAAGCTACCATCCAAAATGAGCAACCTATGCACAGATAGATCATTATTGCTTTTTTCATGTGCATCATCGATTTCTTGGAAACATATTTGTTTCTCCTTTTTTTTCTAGACGAACATTCTCTGGCATCTTGATTAGTAGCAAATATGGATGGTTAAAAAGTCATCTGCATTATTTTCCAGTTCTTAGTTCTTTTATGTGCTTGCAGAGAAACTGCCGTCGTGGCATTATGGGGTCCCCATGCTACACAATTCCACGCTGAAAACTTGCAGCAGCAAGCAGACAATGGACCTGTTGTCATGTTATTTGTTGGTTTAACTGTTAAATTTTGA
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| CDS seq | ATGGATTACAGTCTCCTAAAGGATGTCACACAGGAATCACACCGTTGGCGCGTACGAGTGCGGGCAACCCGCTTCTCGGAGTTCACCATAGCTAATGAGCCTGACAAGATTTTGCGCCTTGATTTAGTCCTGCTTGATGAGCAGTTCAAGCCTTTGCTAAAGGAAGGCGCTGTGTATTACATCAAATACTTCGAAGTCGCCGAGGCACGCCCCCAGTATAGGCCTGTTGATCGGCTGTTGATGGCAAAGTTCACTGCTCACACAACCGTTATAGAAGATACTAGACCACCATCCACGTTCCCATCTTATGCCTGCAAAATTCTTTCTTTTGATGAACTCAGAGCTCGGGCTTACAAGAAAGATATTCTTTCAGATGCTATAGGCATAATGACAACCATCGGGCCAAAGCAGACTGTTTCTTGTGCAGGTGTTATGAAAGTTGTGCTTAATGTCCATATAACCAATGGAAGAGAAACTGCCGTCGTGGCATTATGGGGTCCCCATGCTACACAATTCCACGCTGAAAACTTGCAGCAGCAAGCAGACAATGGACCTGTTGTCATGTTATTTGTTGGTTTAACTGTTAAATTTTGA
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| Protein seq | MDYSLLKDVTQESHRWRVRVRATRFSEFTIANEPDKILRLDLVLLDEQFKPLLKEGAVYYIKYFEVAEARPQYRPVDRLLMAKFTAHTTVIEDTRPPSTFPSYACKILSFDELRARAYKKDILSDAIGIMTTIGPKQTVSCAGVMKVVLNVHITNGRETAVVALWGPHATQFHAENLQQQADNGPVVMLFVGLTVKF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g43990 | LOC_Os01g43990.1 | Chr01 | 25211045 | 25212302 | + | MSU_osa1r7 | ||
| CDS seq | ATGGATTACAGTCTCCTAAAGGATGTCACACAGGAATCACACCGTTGGCGCGTACGAGTGCGGGCAACCCGCTTCTCGGAGTTCACCATAGCTAATGAGCCTGACAAGATTTTGCGCCTTGATTTAGTCCTGCTTGATGAGCAGTTCAAGCCTTTGCTAAAGGAAGGCGCTGTGTATTACATCAAATACTTCGAAGTCGCCGAGGCACGCCCCCAGTATAGGCCTGTTGATCGGCTGTTGATGGCAAAGTTCACTGCTCACACAACCGTTATAGAAGATACTAGACCACCATCCACGTTCCCATCTTATGCCTGCAAAATTCTTTCTTTTGATGAACTCAGAGCTCGGGCTTACAAGAAAGATATTCTTTCAGATGCTATAGGCATAATGACAACCATCGGGCCAAAGCAGACTGTTTCTTGTGCAGGTGTTATGAAAGTTGTGCTTAATGTCCATATAACCAATGGAAGAGAAACTGCCGTCGTGGCATTATGGGGTCCCCATGCTACACAATTCCACGCTGAAAACTTGCAGCAGCAAGCAGACAATGGACCTGTTGTCATGTTATTTGTTGGTTTAACTGTTAAATTTTGA
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| Protein seq | MDYSLLKDVTQESHRWRVRVRATRFSEFTIANEPDKILRLDLVLLDEQFKPLLKEGAVYYIKYFEVAEARPQYRPVDRLLMAKFTAHTTVIEDTRPPSTFPSYACKILSFDELRARAYKKDILSDAIGIMTTIGPKQTVSCAGVMKVVLNVHITNGRETAVVALWGPHATQFHAENLQQQADNGPVVMLFVGLTVKF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0855700 | SBH | 8.259602 | 9.029697 | 10.913931 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g63870 | SBH | 4.615403 | 4.461754 | 2.141360 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0855700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0040120 | RBH | 0.673040 | 0.000000 | 4.264167 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0039580 | SBH | 0.267528 | 0.426021 | 3.273119 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0039990 | RBH | 1.869186 | 0.000000 | 6.875729 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0039450 | SBH | 0.414962 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0025150 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0422800 | SBH | 0.000838 | 0.0093565 | 0.022457 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0024820 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0411600 | SBH | 0 | 0 | 0.0083045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0025110 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0025070 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0025340 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0025350 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0025210 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G025460 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025240 | RBH | 0.0 | 0.0 | 0.0 |
