Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0008891 | OGI:01025120 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:7201264-7226874 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tatgtatcccgaaacacagagctactattgcgtaagtaacatcatactgggtacagcagcaagcattcgtgtttatcgtgtgctatgcatgataacatagaatcctagccacataatgcgtagggtcgctgttaagtctttacaaaaggaagcgtctggctacaaccatgctcaaaggtctatagcgagcgacaaaatagcacagtttgtaaatgcatggcacaatattaaccaacgaaacactgtagagtggttctaaagaagcttggttaaggtacccatgcaagcagagcatgagaccgatgccgagtctgatacaactgtgcaaaacaaaagcgtacacattcctttgctgcatcaggccttgttctcgccgctgaattgcagatgaaaatttgtcaattatataatctagcaacaatcagttgtcattttgcatataagaaaacaaatgccaatgctaatcactctgaatctgtagtacctgccatcagcggtatcgtcaccactttctttgaacaacttcttagctgtgccagtgccaggagatggccttgccctgttttgcaaccatagttagctaaacagagcaaagctaggctactttaactaaaagcatggaagactgagaagagctgtaaccttttgttgtgggacttggatgtggttttcttagtagcagaatgaccacccatttgggaaaggggcaaattgtcatcatcctataggatcagctaaatcattagcgaggaaagttttagcacagaaagactcaggaataaaaggttgggtatgcttgctaagcaggctaacctcatcttcttcgtcaaggacctgaactggagtcttggactggcattcaacatcatcatttttgtccttggctccaacaaccaacggactgtttaatccagccgatggagtggcaggcggatcactgaatccaatggatggagcaaatgctgctgtggactggccaacagagagttcatgtgttacacttggtgatagagctagagaaggtaccatggaggatgcctgagatgcagatggagattgtgggtggcaggattctggctgttgccgtttccgacaatcatattcacttggaatgagacattgcttgaagacatggtattctcggtaatagcaactttccaggtgaaattttcctcaagcaaatttgtgatctccttgggtatggcctccttgccggcagcgttgccctctaacagaatctccactgatcgaccaataagacactgtgctaggcggccaaagagcacgaacttagcgtcagctgtgtcatcacctgccacaacgctaagcttgaacctgcaaacatagagtaatgttagaattggcttatcttctttggtttgacataagtgtggttccggaaagcaatgttactgacctaggtgatgctcccacaagaggagggcatgactcattctggcacttgtatgcgtttccatatggccttgctgttctcctgcatatatcacatgcagtgtaccaccaagagtactccatgtctattttcttgatgacaacagtaaccaagaattcatgtttctgcacaaaagaggtatgaaacaatggttatagctcattctagggaatttggatagcaaaagtgtataaatcacacaatgtatcttgaattcgaaaggattcagatccttaatttggataatcgtcttgggctcagcattgctataagcaggtgctgcaggaggtagatcagtccactctataggactataggttgcttggatgctgtacacataacgacagtgttagtatgtatatataagccaagctacatttaagaaaacgatatgcactttgtatagaaaccttagtacagacctgtttctcagagagatgacctcaggtgtgtctgcgttaatgtaccacttgcaggctgagttacctgataaagagacatcgcctagagaacatatattctattaagcatggaaccattggaactacgatgtagaaacatggttgagtatttggaatattcattaccatagcccttcacaagggtgccaacgaagattactatctgtggttctttctgaccagcaacaaacacctcatcggcaggaaagcttgttgcacgttccccccaaagcgccacattcaagattgcattgctataggaaatatgcagtaacagatgcatgaaaaccaaaatgcaggtggccagatgtatctggcgtatcttttggctgtgttagaggtatgatggttgtattaagaatctctgtgaagataaggggaaagttgtatctcttttggtaattggttagctcagataaaagggaaccatataaacaaatcaagattaagttagtcctgatgaatctattttattttagtatgcaagagttggggctaactcagtgttgcggatgaagacactcctctttacggtgccttgaagcggagtcacgggcgacagctgagtaataattccaatgatatctttttgattttgacaaataaagggaacaatatcagccatttgccaattaacataacatgaagtactatgcatgcattagcaacagtaaagtgagactacctgtgaatgagtctttcttgccaacacgtgagcgaagaccgccaaatggtgagagtgaataagtatacaaaggaatctcagctggtggatcgacacgctcctctagtttagtccaccttgtgaaatagatggacatgcagttgtcgactggtttgtactgcctgttacacttcctcacacggaagtacttaatgtagtacaccttgccttcagtgatgattggcctgaatatctcatcacatgggggataaatctgagcagcaatgctagtcccctgtggcaataacaaagtcagaaaacaccttgtgtgaactaaacaaatcaaggtaatcgttgcacagatctgaccttctcatcaatcaggaccaagccaaagtgaagaatcttgtcatcatccttttggtcacagaaagcccaaaatcgcgaaacccgaacacaaatgcgctcgttgtcgtcaccaagggagagatcagagagcagggtgtgtcccatctgcaaggaaattaacaaagaatttgtcagtagccagtttgctgtagttttaaaaaaaccgaaagcaaaacagcaaggaaaacttacaaaaaacgtgacccaaaatgaaaacaatagcggcacagtgaataagatacgaagaaatgaagaaaacaatcaggcagaacatcaaacaacagcaagcatcggagtctcgagtttcagctaggtatcagcatcctacggaacagaatcgtagcagcgtgttagattgttggaacttaagatattcatgggtaacagctataagatcgggcaatacatgatgtaccatcagatccactgtttgcagcacctcatggtacaccacattctagtcttggaactacatgcctcatcatcaccctcaataagaatcctaaggccgtctcttgaagtcgatctagacaccgcaacatacaactgtccatgcgtgaagacagcttttttaaggtatacgccaacccttttaagggtttggccctggcttttgttgattgtcattgcatagcatacacgcacagggaattgcctcctctgaagagtgaaaggccatttagggctcgtagttgtaagcgctattcttggtatgaacaccctatctccaatgtttgttccagtcaagatctgacattctaagagtcgttgcccaagagaaagggctaacaacctggttccattgcataaacccattgattgatttaggtttcgtagcaacatcactgtgacacccttttttagcgcaagtttatgtgctaggaaattgttggcgctaattgaatttaagaattcggttgggtacagaagatcaaaatctggtatgtgctcagacgatttcgaaatagtgtcgcaactaaggtattccttcacctcaccaggtaccatatcaaccattcggtcatttatgtcgtcaacagttgagttattcgggcatacaatagcacgcgatgctaggtaagaacggtctgtatacttagatgcaaaacctgggaatacttcgtttactatagaatgtattttatcaccagttgtttttatcaacaaatcatcagggatgtcaatccaggttgcttcagattcatcgttcctttttgacacaggcaacttgccatcaccaagcgccaagacccactgagcaaacttttctagctcctgctgctgctgttcaccaagattacactgtaggagcctcatgttgacagtaagttttagaagaacagcatgactccaaagcggagaattcgttatagatgcatcgattatagaagcacgggagcctttccttacaactggtaatatctgcctaaaatcgccacctaggacaacaacctttccaccaaagggcaccaaaccgttggaaggagcatgttcggaaagcaagtctcgtaaagttcgatctagagcctcaaagcaccgcctatgagtcattggagcttcatcccatatgattagtgatgttttttgaataagttcagcaagcatggtccctcttttgatagtgcataaactattttcgtttatatcaatcgggattttaaacctagaatgggcagtgcgtcctcttggcaagaggagagaagcaaccccagatgaagcaactgcgaggacaatttttttctcggaccttactttagaaatcagtgcattccataaaaatgttttaccagttccaccatgaccataaacgaagaaaaaaccaggtttcgattcattaacacggcacattattgtgtcaaatacccttttttggtccgagtttagtttcggtatgatggaatcagcatgggcagcaagagcaacactatcaagagctaactcttcattgaccatcctattcccagaatcgtcatctgtgcgtgctgttgactgtggcaggtcgtaatcgtctata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aaacactggggaaacaaacacctcggatctgtttgttcgggctatatacaaacacaactaaagcaaaatctaaccatcacaaatcagaattagcattgttccggataaatgcaaacacaaccaggggaaaacataggaatcacaaatttgttttttcgtaggcagcccattctttgcaagcgaagaacataggaaggaactgtctgtggattaacttaccaaaagtgaatatgggaagccaaccaatatcatcatatctgtaatcggcaaacagcgctggcggcgcagaacggcggagcttggtgccgcacgatggcaaagactcgagcttgaacagaaggggaaccagcaaatcgagaccagaacatcgatcgatccccacaccatcgatttggcatgccatcagcaagaaaggagggaagataagagagaaaaggaatcaagaccagaacatcgatcccccacaccattgatttggcgccgcaccgtccaatcacctggtcgactgtaatcatggaggaagaaaggagggaaaaggtggctgggtgacggcggcggggatgggcggaggaagaaaggcggagatgggcgggggacagcgtgagcgatgc
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| CDS seq | atgtctgcacgcgttcctcgatcctacgagatgggacacaccctgctctctgatctctcccttggtgacgacaacgagcgcatttgtgttcgggtttcgcgattttgggctttctgtgaccaaaaggatgatgacaagattcttcactttggcttggtcctgattgatgagaaggggactagcattgctgctcagatttatcccccatgtgatgagatattcaggccaatcatcactgaaggcaaggtgtactacattaagtacttccgtgtgaggaagtgtaacaggcagtacaaaccagtcgacaactgcatgtccatctatttcacaaggtggactaaactagaggagcgtgtcgatccaccagctgagattcctttgtatacttattcactctcaccatttggcggtcttcgctcacgtgttggcaagaaagactcattcacagatatcattggaattattactcagctgtcgcccgtgactccgcttcaaggcaccgtaaagaggagtgtcttcatccgcaacactgacaatgcaatcttgaatgtggcgctttggggggaacgtgcaacaagctttcctgccgatgaggtgtttgttgctggtcagaaagaaccacagatagtaatcttcgttggcacccttgtgaagggctatggcgatgtctctttatcaggtaactcagcctgcaagtggtacattaacgcagacacacctgaggtcatctctctgagaaacagcatccaagcaacctatagtcctatagagtggactgatctacctcctgcagcacctgcttatagcaatgctgagcccaagacgattatccaaattaaggatctgaatcctttcgaattcaagatacattgtgtgatttatacacttttgctatccaaattccctagaatgagctataaccattgtttcatacctcttttgtgcagaaacatgaattcttggttactgttgtcatcaaga
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| Protein seq | MSARVPRSYEMGHTLLSDLSLGDDNERICVRVSRFWAFCDQKDDDKILHFGLVLIDEKGTSIAAQIYPPCDEIFRPIITEGKVYYIKYFRVRKCNRQYKPVDNCMSIYFTRWTKLEERVDPPAEIPLYTYSLSPFGGLRSRVGKKDSFTDIIGIITQLSPVTPLQGTVKRSVFIRNTDNAILNVALWGERATSFPADEVFVAGQKEPQIVIFVGTLVKGYGDVSLSGNSACKWYINADTPEVISLRNSIQATYSPIEWTDLPPAAPAYSNAEPKTIIQIKDLNPFEFKIHCVIYTLLLSKFPRMSYNHCFIPLLCRNMNSWLLLSSR |
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| Function | Replication protein A 70 kDa DNA-binding subunit [UniProtKB/Swiss-Prot:P27694] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0008891 | OsCMeo_01g0008891.01 | Chr01 | 7201264 | 7226874 | - | IsoSeq | ||
| CDS seq | atgtctgcacgcgttcctcgatcctacgagatgggacacaccctgctctctgatctctcccttggtgacgacaacgagcgcatttgtgttcgggtttcgcgattttgggctttctgtgaccaaaaggatgatgacaagattcttcactttggcttggtcctgattgatgagaaggggactagcattgctgctcagatttatcccccatgtgatgagatattcaggccaatcatcactgaaggcaaggtgtactacattaagtacttccgtgtgaggaagtgtaacaggcagtacaaaccagtcgacaactgcatgtccatctatttcacaaggtggactaaactagaggagcgtgtcgatccaccagctgagattcctttgtatacttattcactctcaccatttggcggtcttcgctcacgtgttggcaagaaagactcattcacagatatcattggaattattactcagctgtcgcccgtgactccgcttcaaggcaccgtaaagaggagtgtcttcatccgcaacactgacaatgcaatcttgaatgtggcgctttggggggaacgtgcaacaagctttcctgccgatgaggtgtttgttgctggtcagaaagaaccacagatagtaatcttcgttggcacccttgtgaagggctatggcgatgtctctttatcaggtaactcagcctgcaagtggtacattaacgcagacacacctgaggtcatctctctgagaaacagcatccaagcaacctatagtcctatagagtggactgatctacctcctgcagcacctgcttatagcaatgctgagcccaagacgattatccaaattaaggatctgaatcctttcgaattcaagatacattgtgtgatttatacacttttgctatccaaattccctagaatgagctataaccattgtttcatacctcttttgtgcagaaacatgaattcttggttactgttgtcatcaaga
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| Protein seq | MSARVPRSYEMGHTLLSDLSLGDDNERICVRVSRFWAFCDQKDDDKILHFGLVLIDEKGTSIAAQIYPPCDEIFRPIITEGKVYYIKYFRVRKCNRQYKPVDNCMSIYFTRWTKLEERVDPPAEIPLYTYSLSPFGGLRSRVGKKDSFTDIIGIITQLSPVTPLQGTVKRSVFIRNTDNAILNVALWGERATSFPADEVFVAGQKEPQIVIFVGTLVKGYGDVSLSGNSACKWYINADTPEVISLRNSIQATYSPIEWTDLPPAAPAYSNAEPKTIIQIKDLNPFEFKIHCVIYTLLLSKFPRMSYNHCFIPLLCRNMNSWLLLSSR
More
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.944198 | 0.000000 | 9.912401 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0932000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g14770 | RBH | 0.810838 | 0.723148 | 0.164884 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0390300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0017980 | RBH | 0.570439 | 7.315008 | 6.448701 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008510 | RBH | 1.676330 | 6.431366 | 11.350247 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0039450 | SBH | 0.414962 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0131400 | RBH | 0.0018745 | 0.0067045 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0136500 | RBH | 0 | 0.0028815 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002560 | SBH | 0.075790 | 0.585201 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0010110 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G008510 | RBH | 1.035707 | 0.489945 | 5.344918 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0008371 | RBH | 9.490953 | 35.493488 | 11.785679 |
