Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_12g0021860 | OGI:12069640 | 5/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr12:27044408-27045119 | ||||||||
| Gene Symbol | PPS1, PPR, OsPPS1 | ||||||||||
| DNA seq | ATGGAGGAGGAGGCGTTGCGACTGTTCACGCAGATGGTGGCCGAGGCCAGCTTCGTGCCCTGCGAGACCACCATGGCCAGCGTGCTGCCGGTGTGCGCGCGCTCCAAGGCGTTCGCCGGCAAGGAGTTGATGCACAAACACGCTCATGGACATGTACGCGCGCCTCGAAAAGATGGACGTCGCCCGCCGGATCTTCGCCATGGTCGACCTCCCTGACATTGTCTCCTGGAACACCCTCATCACCGGTTGCGTCGTCCAGGGCCACGTCGCCGACGCATTCCAGCTCGTCCGCCAGATGCAGCAGCAAGAAGAAGACGGCGTCGCCGGCGTGGTGCCGAACGCCATCACCCTGATGACCCTCCTGCCGGGATGTGCCATACTAGCGGCGTCGGCGAGGGGGAAGGAGGTCCACATGTACGCGGTGAGGCATGTGCTGGACACGGACGTGGCCGTCGAGAGCGCGCTGGTGGACATGTACGCCAAGTGCGGGTGCCTGGCGCTGTTGAGGGCGGTGTTCGACCGGCTGCCACGGTGGAACACCATCACCTGGAACGTCCTTGTGATGGCGTACGGCATGCATGGGCTCGGCGGTGAGGCCATGGCGCTGTTCAACCGGATGACGGCGAGCGGCGAGGCGAGCCCCAACGAGGTCACCTTCATTGCGGCCCTGGTGGCGTGCAGCCACTCCGGCATGGTGGAGCGTGGGCTGTAG
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| CDS seq | ATGGAGGAGGAGGCGTTGCGACTGTTCACGCAGATGGTGGCCGAGGCCAGCTTCGTGCCCTGCGAGACCACCATGGCCAGCGTGCTGCCGGTGTGCGCGCGCTCCAAGGCGTTCGCCGGCAAGGAGTTGATGCACAAACACGCTCATGGACATATGGACGTCGCCCGCCGGATCTTCGCCATGGTCGACCTCCCTGACATTGTCTCCTGGAACACCCTCATCACCGGTTGCGTCGTCCAGGGCCACGTCGCCGACGCATTCCAGCTCGTCCGCCAGATGCAGCAGCAAGAAGAAGACGGCGTCGCCGGCGTGGTGCCGAACGCCATCACCCTGATGACCCTCCTGCCGGGATGTGCCATACTAGCGGCGTCGGCGAGGGGGAAGGAGGTCCACATGTACGCGGTGAGGCATGTGCTGGACACGGACGTGGCCGTCGAGAGCGCGCTGGTGGACATGTACGCCAAGTGCGGGTGCCTGGCGCTGTTGAGGGCGGTGTTCGACCGGCTGCCACGGTGGAACACCATCACCTGGAACGTCCTTGTGATGGCGTACGGCATGCATGGGCTCGGCGGTGAGGCCATGGCGCTGTTCAACCGGATGACGGCGAGCGGCGAGGCGAGCCCCAACGAGGTCACCTTCATTGCGGCCCTGGTGGCGTGCAGCCACTCCGGCATGGTGGAGCGTGGGCTGTAG
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| Protein seq | MEEEALRLFTQMVAEASFVPCETTMASVLPVCARSKAFAGKELMHKHAHGHMDVARRIFAMVDLPDIVSWNTLITGCVVQGHVADAFQLVRQMQQQEEDGVAGVVPNAITLMTLLPGCAILAASARGKEVHMYAVRHVLDTDVAVESALVDMYAKCGCLALLRAVFDRLPRWNTITWNVLVMAYGMHGLGGEAMALFNRMTASGEASPNEVTFIAALVACSHSGMVERGL |
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| Function | Pentatricopeptide repeat-containing protein At3g57430, chloroplastic [UniProtKB/Swiss-Prot:Q7Y211] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_12g0021860 | OsAzu_12g0021860.01 | Chr12 | 27044408 | 27045119 | + | NAM | ||
| CDS seq | ATGGAGGAGGAGGCGTTGCGACTGTTCACGCAGATGGTGGCCGAGGCCAGCTTCGTGCCCTGCGAGACCACCATGGCCAGCGTGCTGCCGGTGTGCGCGCGCTCCAAGGCGTTCGCCGGCAAGGAGTTGATGCACAAACACGCTCATGGACATATGGACGTCGCCCGCCGGATCTTCGCCATGGTCGACCTCCCTGACATTGTCTCCTGGAACACCCTCATCACCGGTTGCGTCGTCCAGGGCCACGTCGCCGACGCATTCCAGCTCGTCCGCCAGATGCAGCAGCAAGAAGAAGACGGCGTCGCCGGCGTGGTGCCGAACGCCATCACCCTGATGACCCTCCTGCCGGGATGTGCCATACTAGCGGCGTCGGCGAGGGGGAAGGAGGTCCACATGTACGCGGTGAGGCATGTGCTGGACACGGACGTGGCCGTCGAGAGCGCGCTGGTGGACATGTACGCCAAGTGCGGGTGCCTGGCGCTGTTGAGGGCGGTGTTCGACCGGCTGCCACGGTGGAACACCATCACCTGGAACGTCCTTGTGATGGCGTACGGCATGCATGGGCTCGGCGGTGAGGCCATGGCGCTGTTCAACCGGATGACGGCGAGCGGCGAGGCGAGCCCCAACGAGGTCACCTTCATTGCGGCCCTGGTGGCGTGCAGCCACTCCGGCATGGTGGAGCGTGGGCTGTAG
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| Protein seq | MEEEALRLFTQMVAEASFVPCETTMASVLPVCARSKAFAGKELMHKHAHGHMDVARRIFAMVDLPDIVSWNTLITGCVVQGHVADAFQLVRQMQQQEEDGVAGVVPNAITLMTLLPGCAILAASARGKEVHMYAVRHVLDTDVAVESALVDMYAKCGCLALLRAVFDRLPRWNTITWNVLVMAYGMHGLGGEAMALFNRMTASGEASPNEVTFIAALVACSHSGMVERGL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0552300 | SBH | 0.408677 | 0.000000 | 0.099885 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g36620 | SBH | 0.405170 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0552300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0021940 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0022310 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016120 | SBH | 0.687577 | 2.268044 | 0.371349 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0364300 | RBH | 0.0541555 | 0.9490425 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0396400 | RBH | 0.0674125 | 0.446124 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016300 | SBH | 0.053336 | 0.063565 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016520 | SBH | 0.124130 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0016500 | SBH | 0.0 | 3.240609 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016490 | SBH | 0.125648 | 0.0 | 0.156925 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G016490 | SBH | 0.112503 | 0.239960 | 0.203699 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016150 | SBH | 0.792615 | 3.756668 | 0.520853 |
