Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0552300 | OGI:12058460 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:22419950-22427809 | ||||||||
| Gene Symbol | PPS1, PPR, OsPPS1 | ||||||||||
| DNA seq | TATATGCGGAATTTATAATTTGTTTTGTTATTAGTCTACATTTAATACTTTAAATATGTTTCTGTATACTTAAAAAAGATTTGGCACACGAACTAAACACAGCCTAAATAAAGTGCTCAAGAATATACATGAGATTATATTCACAACATTGCCCATTCAGGTAGCCATCGAAGAAGAGGTAGCGGATACGTTGGTAGCCGATTCTTGTTCTTTCTTCTTCACCACCAGACGCTCCCGTGCTTCCTTCACCAGCGAAGCATAATTCCCGACAGGTTTCCCTTGCTTTGAACAAAACATAGCAGCAACCTCATCCATCTCACGACCCATTTCTGGATCTCTGCACGACTGCACTGATCCAAGTGTCGCGTGCTGTCTCACAGAGAGATACCAAGGCTTCCTGCAGCTTCGTCATAGCCTCGCTGACCTAGAAGAAGCAGAGTTGTTATTCTGCTGCTCAGTGCCTTGTGAATTGAGGCCGGCCGGATTGTTGTGCTTCTACGTCAGTATCTGGTGACGAAATCTTGGTGTTACTCGCTTCTGTTGCTGCTGCTTATATTTCTTTCCTTGTAGGAAGTGTTTCTTCGAGCACCTGAAAAGTTGATGGTATTATATATATCAGCTAAGGGAATCAAAAGCAAAGGATATATTACCCCGTATTACATATTTGCATATCTGAAGTTAGTAAAGAAAGCGCCATTTTGTTTTGCTTAGTGGATACTCATACTAGTACTGATTATTATAAGATTATTTGATTACCTGTTGCATGCCGTGGATAATTTCTCGCTTCAGATGCTTGAGAAGTTGATCATCGTTGGTTTTGTCATAAAGAAGAAGCACATAAACGAGTATGGAGCGGTAAGAATACTTCTGATCTAGATCCAAGATAATCATGGCATAGATTTCCCTCCTGGAAGATATTATACCATATCCTGCAGCATTTGCCCTGTCAACTCTCTGATGGAGCTGTCGTTTCCATCAGAACCTAAGTCACCAAAGATGATCAACAGGTGCCAGACCAAATTTGTTCGGCCCCTCATGAAATTTTCTCTGCTTCCGCAAGCCAAAAAGGAAGACGTATCCACATGAATATCTATAATTTTCTCTGCTTACGCATCATCAACCTGGCCAACCTCGAGTGTGCCATGGCGATCGAGTCGCCAGCAGGGTTGGAAATTTCGGACCCCTCATACGATATTATTTCAGCCGCAATTTTTCAGTTTTTTAAATTTTTCGTGAACTTTGGTAATATTTGTTCAAACTCAACTAAATTTTGTTCAAAATTTTAGTATTTCGGTGACGTACGATCAAATCGGCTAAACCGAAAGTTTAACCCTGGTCGCCAGTCTCGCTCGTAGGTCTCCATCCCAGAGTACTCCTGGAAGGTGACAAGAAGGGAAGCTATGCACTGCAGCCCTCGTGGTGGCAGCTCCTCCAGATGGATCTCCCTGTCATACGGGCTTGATCTGGGGCTCAGCGTCTGCACAAGTTTGTGGATGATGTCGCCACCAGTCAGCAGCTGTTTGTTTCATCAACCTATGATGTTCCCGCAGTCCAACCTCATGGATGAGCTCGTCCATAAACCTTTACCCCGGACACGTACCTGTCCAGTGGCTTAGACGACTCCATCAGCTCGACGATCAGGTTCCTTCCTTCTCACGTCTTACCCTGGTTTCCTTCCTCCAGGTAGCCCAGCAGCGGATCGCGTGGCAGCCGACATCTGTAATGGCAGTTATACACATAAGTGCTTCGCTATCAACTTCTCCGCGAGAAAAGATGGTCTTGTAACAGAAGAGAATACCCTGGGCCAGAGCTAGGGAGTAGAGGACGTCCAGCGCAGAGGCTTCAGGTTTGCTTTGCTCGGATCATCTCCACCGACCACCGCTGCCGACGATGTACAGGCAGCCCGGACATGTAGAAAGCTGCTAGTGGGCATGCACAATACGATGCCGAACACCAGCCCCTGAACTCCGATCCGAACCCCACAAGCAGCTCTACGACATGAAAATGTATAACTGCCGCGCGCATCGTGAAGCCGTCCATCAGAAAATCCACATAAAACTCCTCGGCGATTACGCTTACACTCCCGACTATTCCTCTGAAAGCACACAAAATATGCACCAGCTTCTCTTTCAAGGAGGCATCGAATACCCTGTTCAATGAAAACAAACCAAAAAAAAAACGCCTTCATATTCCTCTTACAGCATCATAAATGAACTTAAGGACACAGACACAACGGAAAATTTAGGTGCGTGAAAGATGGAAGCACTCTATAATTTTCTAGAGAAACTAGCACATAGCCTTGCAATAGCATTGAACTAGCACAAGCTTCTTAGGCCCTGTTTGGAGGAGCTTATCTCAGCTGTAGCTTTTCCCAAAAGCTGCTTCTGCTAGAAGCTGCCCCAAACAGTCCACAGCTTCTAAGAATCTGTAGTTACAGATTCTGAAAAATGAACTAAGAAGCCAGAAGCTGAAGAAACTGAGTTTCAGAGCTTTTCTAGATTCTCAGAAGCTGGCTACCAAGCAGCTGCTTCTCAGAATCTAAAGCTCTCCCAAACAGGCCCTTATAGCCGTTTGACTCAGTACAGTGTTAAAATCATATTCTATTTGGTTTTCTCGTCAATAATAAATAAATTAACAATCCAACACCTAGAACCAAGCACTCAAGCAGTGGAGTTTGTCACCAGAGACCTAAGAATGTCCGTATGAGAGTTGACTCCCCATGCCATATCCTAAACTCTCCTATGAAAAAACAATCCCCACAGGAGGGTTTATCTTTCGATTGGGCCATTGGCAGATGGCAGTGATCTTAATTTTTCACTCATTGTGCATTGGCAGTGGAGTGGGCCACTACTTTTGCCTACGTTTTGCCCATTATCACATTGGCAATGGGTTATCATCTTTGCTCGTTTAGTATTGGCCCACTGGGTCATTTACATCTGCTTGCGTAACATATAAAATATACCTTTTTTTCAGAATTTTTAACTATAGATGTGGTCCTAATTAGGCCCATTAAATCTCATAAACAGGTCTGATAAGAGCCATTTGACATTGGCTGTGAATTTCTTCCCTTCTAACTAATTTCGGCATGTCTTACATATGGGACAAGTTTCTTATTGTCTGCACAGCACAATCTATGTACCACATAATACTCCCTCTGTTTCAGGTTATAAGACGTTTTGACTTTGGTCAAAGTCAAACTGTTTTAAGTTTGACTAAGTTTATAGACAAATATAATAATATTTATAATACTAAATTAGTTTCATCAAATCAATAATTGATTATATTTTCATAATAAATTTGTCTTGGGTTAAAAATGTCACTACTTTTCTCTATAAACTTGGTCAAAGTTAAAGGAGTTTGACTTTGATCAAAGTCAAAACGTCTTATAACCTGAAACGGAGGGAGTAATTCATAAGCCCTTACCAGGTTTCCACCTCACGACCATCAACGTACCTGCTGATAAGCCATTTTTTGGTTTGGGCATGTCAGCTCCATCACAGCTGCAGCAGCAGAAGCAGGCTTGAGAATGTTTCTACGTGCTCCAGATTTCAGATGACTAATTGGGGTTTCCAATTGTTTTCCTTTCATCCCTCCTGCTCGCTCCTTTCTTTCAGTTTTCTCAATCTGTCTGCGAAGTAAAGCAAGCATAAGACAAGGTTCAGTTCATTCAGTTGTATATGCCTATGATCACCATGGCATGCACATGAAAGAAGCTAACATAGAAGCTGTACAACATGCCGTGATTTGTCATATTTCACAAATATACACAAGGAATAAGGTTTCTAGGTACAAGTACAACATGTATTTGCCAGTCCTAATACATTATCAAATGAGTTAAATAATTTACTGATACTACTATGGAGGACATAGTCAGACCTCAATTATTGAATCCCAAAGCAATGTTGAGATTAGGGGAAATCCATCGTCAGAGTTGGGTAATCTCAGCAATTAGGATTTTACATGAACATGTAATTGTATCAACGGAGTCTGAGTGTCTGACCGAACTCTTGATTGATTTTTTTAGGCCTACCAGTGACTGATAATAGACCCTACTTGACCATTTGTTCTCTTCTGATGAAGAAAGTTGGCATACAATGAAGTATATTTCTCCACCTGAAACAAGCGAGATGGTTGTCAGAAAAGAGAATGTAATACATATACATTCAGATAATTGTCAGAAGAGAGAATGTAATACATACACATTCAGATAAAAATACTTAAGATGACAATACCAACATGATAAAAGAAAAATAGCAGAACAGGAATTCTTAATCCAAAGATCGTTTCTCAGGGGAGAATAACTGTACATTATATTGCCTGTCTGTCTGATCATGCTGAATTCCAGTTTTAGATGTGTGCATGTAGCACTAGAAAGAAAGAGGTGTATGTCCCACATAAACTGCTTGAAGTGGCACCGTAATGAGTATAAATGGGTTACTTGGGGCTGGTAATTGTAGGTTTTCACTTCAAAGCACTTCACCAGAAGTCTCCGCATGAACAGCTTCCATTGTTAAAATGGTGAAATCTGTAGACATCTCGTAATACAATTTGTCTTCCCATGACGTCGGAAGTAAATTTCATCCAAGTGTGGCAATCGTTACATACACGAAGATTTTTAATGACTCGAAGGGGCATACAGGGAGGCAAACTCATCAACCCAAAAGTCACAGCTAACTTCTCGCTGTGCACAAGATCAGTAGGATCTCTCCCTTCTTGCTCTTTATCATGGAAGAGATGATATTTCTCTTGCTTGTATCCTACTTTGGCTACCCTATCATTTATAACAGCCAAAAAATTGTATATCTGCTCAGCCAAGGGGTGTAATCTGTCACCAACAAAGAATGCATGAACCACATTCTTTACTTCAATCCAGCTCCGGCCTGGTTCCTTTCTGACTCCTCTGTCTCTCATCATCTTTCTGACCTGATCCCTATTGGCCCACTTCTCGGTAACAGCATATGCATTTGAGAGAAGAACATATGATGCAGAATCATGAGGCTCCAATTCCAATAGATGTTTGGCTGCAAACTCTCCAACTTCTATGTTCTTGTGTACTTTACAGGCGCTGAGAAGGGTTCTCCAAACCATAGCATCAGCAGCAATTGGCATTTCCTCAATAAATTTCTTTGCACGGTCAAGTTGCCCAGCTCGTCCAAAGATATCGATAACACAAGCATAATGATCAGGCCTTGGACGAATTCCATACTCATCAGACATTGATTTGAAGTAACTAAGGCCTTCCTCCACCAATCCCACATGACTGCAAGCAGCTAAAACACCTATGAATGTAACATCATTTGGTTTAATACCTTCTTTCTTCATTTGATCAAATAAATCCAAAGCCTCCAAGCCACGTCCATGCTGTGAACAGCTTGTGATAATAGTATTCCATGACACCTCATTTCTCTCAGACATTTCAGAAAATTCCATCTTGGCATCCTCAAAGCTACCACACTTCCCGTACAAGGAAATCAGAGCATTTCCAACTTCAGTTTCGAAGGAATGACCTGTTTTAATAACTCTGGCATGTATTTGTTTTCCTTGTTTTATTTCTGCAAGGTTAGCTGAAGCACTAAGAGCTGATACAAATGTGAACACATTATGCTTGACACCTGATTGATCCATACGCATAAATACCTTGAGAGCTTCTTCATGTAGGCCACTTTGTGCAAAACCAGATACCAGGCCGTTCCATGTTATCTCATCTTTATGTTCAATTTCCTCGAATGAAGAGAAAGCTTCTCTGATTCTTCCGCATCGTGCATAAAGGTTTACCAATGCATTCCAAATTGAAACATCTCCTGAATAACCAGACACATAAATCCGAGCATGAATCTGCAAGCCTTGCCTCATTGCATTGATTCCAGCGCAGCCACTTATAGCACTTGCTAGTCCTATGTTATCTGGCCAAATTCCACATTTCTGCATCTCTTTAAAAGCTGCAAGAGCGTCCTTACAACACTCATGTTGCACATATCCAGCAATCATGGAAGTCCAGGAAACCACGTCTTTCTCTTTAAGCATTTCAAGAACACGTCTTGCCTTTTCAAGCCACCCATATTTGGAATACATATCTATCAATACACCACTAACATACATATCAGACTCGAAGCCAGTTTTTACACTTAATGAATGGATCTGCTCTCCAAGGTCAATTTCTCTAGTGCAAGTGCAAGTCCTTAAAATGCATGGGTACGTGAATTGGTTAGGGCGTATACCTGCAGCCTGCATTTGACAGAATAGCTCAAAAGACTTTGCTAGATCATTGATCTGCCCAAATGCCACAAGCATCAGGTTCCAGAGTACTACGTTAGTCCTATCACTCGAATTGAAGATCACAAGGGCAGTTTCAACATCACCACATTTCACATAGAGGTCAAGGAGTGAACCTTCCATTATGTAATCCGAAGAGATGCCTGCTTTAAACAGATAGGAATGGAGTTGCGTCCCCTTTTGAAGATCACCAAGCGACGCACAAGCTGCAAGCAGACTAGAAATGGTCACACAATCAGGGCTTAACCCTGAGAACTGCATCTCCTCAAATATCTCTAAAGCATGCTCCCCATGTCCACACTGAGCATGTCCTGAGATCAACGTATTGAATGTTACTGTGTCACGGTGTGGCATGTCGCAAAATACTCTCTCTGCCAATCTGAATGATCCGCACCGCAAGTACAGCGTGATAACAGCATTCCCCACAAAGATTTCAGAGCAGAATCCGTGCTTGTAACCTTGGGCATGAATCAACCGTCCTTGCGCAAAGAGCTCCGCTTTAGTGCACGAACTCAGGACGCTAGACAGAACATAAGGTGTAGGAACAACCCCAGCTCGATGCATCTGGCGATACAGCCCGAGAGCTTCCTCCCCAAGGCCATTCTGCGCATACCCTGACAGCATTGCCACCCAGGAGACATTGTCCCTGGCAGAAAGCTCCTCAAACACCCGCCTCGCAGGCAGAACAAGCCCGTTCTTGGAGTACAGGTCAATCAGAAGGTTGCCGACGATCCTGTATTTCCCAAGACCACGCGTGACAGCCTTCGCGTGTATCTCCGGAACGACCTGCCAACGCCTGCCATTCCCCCTGCACGCGCGCAGGGCGCACGCGAAGTCGAGGGGGCCAAGACCCCCATGCTGCCTGGCCTTGTCCGCAAATAGGGAGAGGACCTTGGCTGGATCTTCATGCGCCAGGAACCCGGCGAGCGTCCTCCCGAGGGAGGCCGCTCCCCGGCGCGTCATTCCGTCGAACACCTGGGGCGCGACACAGTGGATGGCATCTCAGCCTGCGGATCTCCAGGGCAGATGGTGCTTCACGGTGCTACGATTGCAGGAGGGAGTAATGGCATGCGTAGAAGGTAGGAGGCGGTGGTGGCGGCGGCGGCGGCGAGGTCGCCGGACGCCGGCGGAGGCAAGGTCGCCTGCTTGCGCCGCCGCGGCGGAGGTTGTGGGAGTGGGAGGGCCGAGGGAGGTGTTAGAAACTCCGAACTGAGAGTGATGAAGATCCAATGGTTGAGATTCGGAGATGCCTCTTTAGCCCACCGACGGCTGAGATCATACTAACTTTGTTTTTCTTTTTTCCTTTTCTAGGTGACATTCTTCGGGTGTGTTTAAGAGGAGCAAAAAGAAAAAAAAAGATTAAGAAGAAACAAGATAAACTATTGATGCATGATTATTTGAGTATTAATTATTTTAAATTTAAAAAATTAATTAATATAATTTTTAAAAACAACTTTTTTATAAAAAAAAATATAGAAAAAATACCATTTAATACTTTGAAAAGCATGGGTATAGAAAACCAGCTACTTTTCTCCCGACTGCGCTTGTCTCAAAGACAACCTCGAGTTGTCTGAGCATCTGATTGAT
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| CDS seq | ATGACGCGCCGGGGAGCGGCCTCCCTCGGGAGGACGCTCGCCGGGTTCCTGGCGCATGAAGATCCAGCCAAGGTCCTCTCCCTATTTGCGGACAAGGCCAGGCAGCATGGGGGTCTTGGCCCCCTCGACTTCGCGTGCGCCCTGCGCGCGTGCAGGGGGAATGGCAGGCGTTGGCAGGTCGTTCCGGAGATACACGCGAAGGCTGTCACGCGTGGTCTTGGGAAATACAGGATCGTCGGCAACCTTCTGATTGACCTGTACTCCAAGAACGGGCTTGTTCTGCCTGCGAGGCGGGTGTTTGAGGAGCTTTCTGCCAGGGACAATGTCTCCTGGGTGGCAATGCTGTCAGGGTATGCGCAGAATGGCCTTGGGGAGGAAGCTCTCGGGCTGTATCGCCAGATGCATCGAGCTGGGGTTGTTCCTACACCTTATGTTCTGTCTAGCGTCCTGAGTTCGTGCACTAAAGCGGAGCTCTTTGCGCAAGGACGGTTGATTCATGCCCAAGGTTACAAGCACGGATTCTGCTCTGAAATCTTTGTGGGGAATGCTGTTATCACGCTGTACTTGCGGTGCGGATCATTCAGATTGGCAGAGAGAGTATTTTGCGACATGCCACACCGTGACACAGTAACATTCAATACGTTGATCTCAGGACATGCTCAGTGTGGACATGGGGAGCATGCTTTAGAGATATTTGAGGAGATGCAGTTCTCAGGGTTAAGCCCTGATTGTGTGACCATTTCTAGTCTGCTTGCAGCTTGTGCGTCGCTTGGTGATCTTCAAAAGGGGACGCAACTCCATTCCTATCTGTTTAAAGCAGGCATCTCTTCGGATTACATAATGGAAGGTTCACTCCTTGACCTCTATGTGAAATGTGGTGATGTTGAAACTGCCCTTGTGATCTTCAATTCGAGTGATAGGACTAACGTAGTACTCTGGAACCTGATGCTTGTGGCATTTGGGCAGATCAATGATCTAGCAAAGTCTTTTGAGCTATTCTGTCAAATGCAGGCTGCAGGTATACGCCCTAACCAATTCACGTACCCATGCATTTTAAGGACTTGCACTTGCACTAGAGAAATTGACCTTGGAGAGCAGATCCATTCATTAAGTGTAAAAACTGGCTTCGAGTCTGATATGTATGTTAGTGGTGTATTGATAGATATGTATTCCAAATATGGGTGGCTTGAAAAGGCAAGACGTGTTCTTGAAATGCTTAAAGAGAAAGACGTGGTTTCCTGGACTTCCATGATTGCTGGATATGTGCAACATGAGTGTTGTAAGGACGCTCTTGCAGCTTTTAAAGAGATGCAGAAATGTGGAATTTGGCCAGATAACATAGGACTAGCAAGTGCTATAAGTGGCTGCGCTGGAATCAATGCAATGAGGCAAGGCTTGCAGATTCATGCTCGGATTTATGTGTCTGGTTATTCAGGAGATGTTTCAATTTGGAATGCATTGGTAAACCTTTATGCACGATGCGGAAGAATCAGAGAAGCTTTCTCTTCATTCGAGGAAATTGAACATAAAGATGAGATAACATGGAACGGCCTGGTATCTGGTTTTGCACAAAGTGGCCTACATGAAGAAGCTCTCAAGGTATTTATGCGTATGGATCAATCAGGTGTCAAGCATAATGTGTTCACATTTGTATCAGCTCTTAGTGCTTCAGCTAACCTTGCAGAAATAAAACAAGGAAAACAAATACATGCCAGAGTTATTAAAACAGGTCATTCCTTCGAAACTGAAGTTGGAAATGCTCTGATTTCCTTGTACGGGAAGTGTGGTAGCTTTGAGGATGCCAAGATGGAATTTTCTGAAATGTCTGAGAGAAATGAGGTGTCATGGAATACTATTATCACAAGCTGTTCACAGCATGGACGTGGCTTGGAGGCTTTGGATTTATTTGATCAAATGAAGAAAGAAGGTATTAAACCAAATGATGTTACATTCATAGGTGTTTTAGCTGCTTGCAGTCATGTGGGATTGGTGGAGGAAGGCCTTAGTTACTTCAAATCAATGTCTGATGAGTATGGAATTCGTCCAAGGCCTGATCATTATGCTTGTGTTATCGATATCTTTGGACGAGCTGGGCAACTTGACCGTGCAAAGAAATTTATTGAGGAAATGCCAATTGCTGCTGATGCTATGGTTTGGAGAACCCTTCTCAGCGCCTGTAAAGTACACAAGAACATAGAAGTTGGAGAGTTTGCAGCCAAACATCTATTGGAATTGGAGCCTCATGATTCTGCATCATATGTTCTTCTCTCAAATGCATATGCTGTTACCGAGAAGTGGGCCAATAGGGATCAGGTCAGAAAGATGATGAGAGACAGAGGAGTCAGAAAGGAACCAGGCCGGAGCTGGATTGAAGTAAAGAATGTGGTTCATGCATTCTTTGTTGGTGACAGATTACACCCCTTGGCTGAGCAGATATACAATTTTTTGGCTGTTATAAATGATAGGGTAGCCAAAGTAGGATACAAGCAAGAGAAATATCATCTCTTCCATGATAAAGAGCAAGAAGGGAGAGATCCTACTGATCTTGTGCACAGCGAGAAGTTAGCTGTGACTTTTGGGTTGATGAGTTTGCCTCCCTGTATGCCCCTTCGAGTCATTAAAAATCTTCGTGTATGTAACGATTGCCACACTTGGATGAAATTTACTTCCGACGTCATGGGAAGACAAATTGTATTACGAGATGTCTACAGATTTCACCATTTTAACAATGGAAGCTGTTCATGCGGAGACTTCTGGTGA
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| Protein seq | MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRVIKNLRVCNDCHTWMKFTSDVMGRQIVLRDVYRFHHFNNGSCSCGDFW |
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| Function | Pentatricopeptide repeat-containing protein At4g13650 [UniProtKB/Swiss-Prot:Q9SVP7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0552300 | Os12t0552300-01 | Chr12 | 22419950 | 22427809 | - | irgsp1_rep | ||
| CDS seq | ATGACGCGCCGGGGAGCGGCCTCCCTCGGGAGGACGCTCGCCGGGTTCCTGGCGCATGAAGATCCAGCCAAGGTCCTCTCCCTATTTGCGGACAAGGCCAGGCAGCATGGGGGTCTTGGCCCCCTCGACTTCGCGTGCGCCCTGCGCGCGTGCAGGGGGAATGGCAGGCGTTGGCAGGTCGTTCCGGAGATACACGCGAAGGCTGTCACGCGTGGTCTTGGGAAATACAGGATCGTCGGCAACCTTCTGATTGACCTGTACTCCAAGAACGGGCTTGTTCTGCCTGCGAGGCGGGTGTTTGAGGAGCTTTCTGCCAGGGACAATGTCTCCTGGGTGGCAATGCTGTCAGGGTATGCGCAGAATGGCCTTGGGGAGGAAGCTCTCGGGCTGTATCGCCAGATGCATCGAGCTGGGGTTGTTCCTACACCTTATGTTCTGTCTAGCGTCCTGAGTTCGTGCACTAAAGCGGAGCTCTTTGCGCAAGGACGGTTGATTCATGCCCAAGGTTACAAGCACGGATTCTGCTCTGAAATCTTTGTGGGGAATGCTGTTATCACGCTGTACTTGCGGTGCGGATCATTCAGATTGGCAGAGAGAGTATTTTGCGACATGCCACACCGTGACACAGTAACATTCAATACGTTGATCTCAGGACATGCTCAGTGTGGACATGGGGAGCATGCTTTAGAGATATTTGAGGAGATGCAGTTCTCAGGGTTAAGCCCTGATTGTGTGACCATTTCTAGTCTGCTTGCAGCTTGTGCGTCGCTTGGTGATCTTCAAAAGGGGACGCAACTCCATTCCTATCTGTTTAAAGCAGGCATCTCTTCGGATTACATAATGGAAGGTTCACTCCTTGACCTCTATGTGAAATGTGGTGATGTTGAAACTGCCCTTGTGATCTTCAATTCGAGTGATAGGACTAACGTAGTACTCTGGAACCTGATGCTTGTGGCATTTGGGCAGATCAATGATCTAGCAAAGTCTTTTGAGCTATTCTGTCAAATGCAGGCTGCAGGTATACGCCCTAACCAATTCACGTACCCATGCATTTTAAGGACTTGCACTTGCACTAGAGAAATTGACCTTGGAGAGCAGATCCATTCATTAAGTGTAAAAACTGGCTTCGAGTCTGATATGTATGTTAGTGGTGTATTGATAGATATGTATTCCAAATATGGGTGGCTTGAAAAGGCAAGACGTGTTCTTGAAATGCTTAAAGAGAAAGACGTGGTTTCCTGGACTTCCATGATTGCTGGATATGTGCAACATGAGTGTTGTAAGGACGCTCTTGCAGCTTTTAAAGAGATGCAGAAATGTGGAATTTGGCCAGATAACATAGGACTAGCAAGTGCTATAAGTGGCTGCGCTGGAATCAATGCAATGAGGCAAGGCTTGCAGATTCATGCTCGGATTTATGTGTCTGGTTATTCAGGAGATGTTTCAATTTGGAATGCATTGGTAAACCTTTATGCACGATGCGGAAGAATCAGAGAAGCTTTCTCTTCATTCGAGGAAATTGAACATAAAGATGAGATAACATGGAACGGCCTGGTATCTGGTTTTGCACAAAGTGGCCTACATGAAGAAGCTCTCAAGGTATTTATGCGTATGGATCAATCAGGTGTCAAGCATAATGTGTTCACATTTGTATCAGCTCTTAGTGCTTCAGCTAACCTTGCAGAAATAAAACAAGGAAAACAAATACATGCCAGAGTTATTAAAACAGGTCATTCCTTCGAAACTGAAGTTGGAAATGCTCTGATTTCCTTGTACGGGAAGTGTGGTAGCTTTGAGGATGCCAAGATGGAATTTTCTGAAATGTCTGAGAGAAATGAGGTGTCATGGAATACTATTATCACAAGCTGTTCACAGCATGGACGTGGCTTGGAGGCTTTGGATTTATTTGATCAAATGAAGAAAGAAGGTATTAAACCAAATGATGTTACATTCATAGGTGTTTTAGCTGCTTGCAGTCATGTGGGATTGGTGGAGGAAGGCCTTAGTTACTTCAAATCAATGTCTGATGAGTATGGAATTCGTCCAAGGCCTGATCATTATGCTTGTGTTATCGATATCTTTGGACGAGCTGGGCAACTTGACCGTGCAAAGAAATTTATTGAGGAAATGCCAATTGCTGCTGATGCTATGGTTTGGAGAACCCTTCTCAGCGCCTGTAAAGTACACAAGAACATAGAAGTTGGAGAGTTTGCAGCCAAACATCTATTGGAATTGGAGCCTCATGATTCTGCATCATATGTTCTTCTCTCAAATGCATATGCTGTTACCGAGAAGTGGGCCAATAGGGATCAGGTCAGAAAGATGATGAGAGACAGAGGAGTCAGAAAGGAACCAGGCCGGAGCTGGATTGAAGTAAAGAATGTGGTTCATGCATTCTTTGTTGGTGACAGATTACACCCCTTGGCTGAGCAGATATACAATTTTTTGGCTGTTATAAATGATAGGGTAGCCAAAGTAGGATACAAGCAAGAGAAATATCATCTCTTCCATGATAAAGAGCAAGAAGGGAGAGATCCTACTGATCTTGTGCACAGCGAGAAGTTAGCTGTGACTTTTGGGTTGATGAGTTTGCCTCCCTGTATGCCCCTTCGAGTCATTAAAAATCTTCGTGTATGTAACGATTGCCACACTTGGATGAAATTTACTTCCGACGTCATGGGAAGACAAATTGTATTACGAGATGTCTACAGATTTCACCATTTTAACAATGGAAGCTGTTCATGCGGAGACTTCTGGTGA
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| Protein seq | MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRVIKNLRVCNDCHTWMKFTSDVMGRQIVLRDVYRFHHFNNGSCSCGDFW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0552300 | RBH | 0.408677 | 0.000000 | 0.099885 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g36620 | RBH | 0.405170 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016800 | RBH | 0.109056 | 0.0 | 0.546103 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016930 | RBH | 0.030158 | 0.513378 | 0.419964 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017280 | RBH | 0.120707 | 0.000000 | 2.286640 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016610 | RBH | 0.0 | 0.016931 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016120 | RBH | 0.687577 | 2.268044 | 0.371349 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0296200 | RBH | 22.616001 | 39.187214 | 152.080223 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016070 | RBH | 0.096414 | 0.0 | 0.082328 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0328700 | RBH | 26.370843 | 50.5836715 | 29.4521765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016300 | RBH | 0.053336 | 0.063565 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016520 | RBH | 0.124130 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0016500 | RBH | 0.0 | 3.240609 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016490 | RBH | 0.125648 | 0.0 | 0.156925 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016710 | RBH | 0.000000 | 0.976375 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G016490 | RBH | 0.112503 | 0.239960 | 0.203699 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016150 | RBH | 0.792615 | 3.756668 | 0.520853 |
