Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_12g0014940 | OGI:12052760 | 15/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr12:20042668-20044436 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACAAGCTTGTCCTGCCTTCGATTGAATTTTTAAGAGCATTTGCATGTTCTTCCTGGATGGAATTTTCCTTATTTTCTACGACAAGAGTGCGCAGGTACTTGAACTTGGAAATAACATTTATAGTTTCAGCATTTATGCCTTCTACGTACAAGTGTCGCACTGTTAGAGGTATGCCAATTCCAAGGTCAGTGGCTTTTAATCTTGAACATTCCCCAATGGAGACAGTGCATGAAAATTCATGCATTCCATCATGCAAGACATAGTAATCTTCAGAAGTATCAACATTCAGTTCTCTGGGTACAAGTGAAAAGAATGATTTTTCCCTAGAGTATTGAAGTACTGTATAGCAATATCTTCCCGGTTATTTATGCCATCCTCTCTTTGCAATATCAGTCCTGAACTCACCCACATCTCAACCATCTCTTCCATCTTGAACTTGTAATGAGGTGGAAATATGCTGCAGTACCGGAAGCAAACCTGCACTTCATTACTCAGGCTTTCGTAACTCAGTCTGAGAACTTTCTTGATTTCAGTGGCAACATCATCAACTTTGTGGATATCGTGATTTAAGATGGTGTTCCATCTGGCATGATCTGTGTTTCCTTGTAGATGCCGGCCAATTGTTCTTGCTAACAAAGGGCATCCTTTGAGTTTTCTGGCAATCTGTTCACCAATCAATTGAAGCTCGAAGCAGTCACTGGGACTCAAGTCACCAAACGCATGATGATTGAAGAGCTTCAGAGTGTTCTCTTGATCTAAACCACCCAGCTCCAAACATTTATATGTATCTGGAGGCATCTGGCCTTCAACAGCATTAGCCACTGGCCTTATTTGGGTCGTGAGCAAGATTTTACCTCCCATTGGGGCATTTTTTCTGATTAGATCTAAAAATTGTTGCCATCGTTCACTTTGTGCATCATCCCGTGCATCGTCTAAGACCAGTAGAAATTTGTCAGTCATAATGGTGTCCAAGCCATCAGCGCTAGCTTTGTACCTGTTGAATGATCCCGAGATCTTCCTCACCAACACTTTAGGATCAAAGATCTTAGATACGTCTGCCCATATGATTTTGTTAGCAAAATGATCTTGAACCTTCTTATCTTGACAGACAAACTGGGCAAGTGTTGTTTTCCCCATACCACCAGCACCAACAATTGCACACAATGAGAGCTTTTGATCTCTAATATTTGGAGTTAGAACACCGAGCCAATCGATTATTGCATCCTTTTCCTTGAGCCGACCAAATATAGTTGTTCTCAACTCTTTTGTGACCTCCTGTATGCTGGCAGAATCTTGGATGTGCGCTTTACCATGAGAGCACGAGCTGGGATATATGGCCGGGAGGGATCTCCCTGCATTGTCAAGGACTGCATCTAAATTCTTGAGTGCATCTTTCAGATTCTCCGTTGCTCTACTGGAGTCAGCAACATGGAATTTCCTGCTGATGCTACTCAAAAGGGATGATAAGCTCACCTTGCTGCGATTATTGGCGCTGCTCTTGAGGTCCAAGAACTCCAGTGTATCGAGCGCATCTTCGGCCTCCTGGATGGCATCCCTGAGCTGCCACACCACCTCAGACAAACTTGGATTGCTCAGTGTCTGCTGCCGATCAACAGCGTAGAGGATCGCTTCAACAAAGGGCAGCTTCTGCTGCAGCCTCTTGCACAGATCCCCGTCGGGAATGCGATCGACAATCTTTTTGACGAGGTAGGTGATGGCCGGCTGCACTACGGCCTTCCCGGCGAAAACAGCTGCAGCTTCCGCCAT
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| CDS seq | ATGGCGGAAGCTGCAGCTGTTTTCGCCGGGAAGGCCGTAGTGCAGCCGGCCATCACCTACCTCGTCAAAAAGATTGTCGATCGCATTCCCGACGGGGATCTGTGCAAGAGGCTGCAGCAGAAGCTGCCCTTTGTTGAAGCGATCCTCTACGCTGTTGATCGGCAGCAGACACTGAGCAATCCAAGTTTGTCTGAGGTGGTGTGGCAGCTCAGGGATGCCATCCAGGAGGCCGAAGATGCGCTCGATACACTGGAGTTCTTGGACCTCAAGAGCAGCGCCAATAATCGCAGCAAGGTGAGCTTATCATCCCTTTTGAGTAGCATCAGCAGGAAATTCCATGTTGCTGACTCCAGTAGAGCAACGGAGAATCTGAAAGATGCACTCAAGAATTTAGATGCAGTCCTTGACAATGCAGGGAGATCCCTCCCGGCCATATATCCCAGCTCGTGCTCTCATGGTAAAGCGCACATCCAAGATTCTGCCAGCATACAGGAGGTCACAAAAGAGTTGAGAACAACTATATTTGGTCGGCTCAAGGAAAAGGATGCAATAATCGATTGGCTCGGTGTTCTAACTCCAAATATTAGAGATCAAAAGCTCTCATTGTGTGCAATTGTTGGTGCTGGTGGTATGGGGAAAACAACACTTGCCCAGTTTGTCTGTCAAGATAAGAAGGTTCAAGATCATTTTGCTAACAAAATCATATGGGCAGACGTATCTAAGATCTTTGATCCTAAAGTGTTGGTGAGGAAGATCTCGGGATCATTCAACAGGTACAAAGCTAGCGCTGATGGCTTGGACACCATTATGACTGACAAATTTCTACTGGTCTTAGACGATGCACGGGATGATGCACAAAGTGAACGATGGCAACAATTTTTAGATCTAATCAGAAAAAATGCCCCAATGGGAGGTAAAATCTTGCTCACGACCCAAATAAGGCCAGTGGCTAATGCTGTTGAAGGCCAGATGCCTCCAGATACATATAAATGTTTGGAGCTGGGTGGTTTAGATCAAGAGAACACTCTGAAGCTCTTCAATCATCATGCGTTTGGTGACTTGAGTCCCAGTGACTGCTTCGAGCTTCAATTGATTGGTGAACAGATTGCCAGAAAACTCAAAGGATGCCCTTTGTTAGCAAGAACAATTGGCCGGCATCTACAAGGAAACACAGATCATGCCAGATGGAACACCATCTTAAATCACGATATCCACAAAGTTGATGATGTTGCCACTGAAATCAAGAAAGTTCTCAGACTGAGTTACGAAAGCCTGAGTAATGAAGTGCAGGTTTGCTTCCGGTACTGCAGCATATTTCCACCTCATTACAAGTTCAAGATGGAAGAGATGGTTGAGATGTGGGTGAGTTCAGGACTGATATTGCAAAGAGAGGATGGCATAAATAACCGGGAAGATATTGCTATACAAGAACTGAATGTTGATACTTCTGAAGATTACTATGTCTTGCATGATGGAATGCATGAATTTTCATGCACTGTCTCCATTGGGGAATGTTCAAGATTAAAAGCCACTGACCTTGGAATTGGCATACCTCTAACAGTGCGACACTTGTACGTAGAAGGCATAAATGCTGAAACTATAAATGTTATTTCCAAGTTCAAGTACCTGCGCACTCTTGTCGTAGAAAATAAGGAAAATTCCATCCAGGAAGAACATGCAAATGCTCTTAAAAATTCAATCGAAGGCAGGACAAGCTTGTGA
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| Protein seq | MAEAAAVFAGKAVVQPAITYLVKKIVDRIPDGDLCKRLQQKLPFVEAILYAVDRQQTLSNPSLSEVVWQLRDAIQEAEDALDTLEFLDLKSSANNRSKVSLSSLLSSISRKFHVADSSRATENLKDALKNLDAVLDNAGRSLPAIYPSSCSHGKAHIQDSASIQEVTKELRTTIFGRLKEKDAIIDWLGVLTPNIRDQKLSLCAIVGAGGMGKTTLAQFVCQDKKVQDHFANKIIWADVSKIFDPKVLVRKISGSFNRYKASADGLDTIMTDKFLLVLDDARDDAQSERWQQFLDLIRKNAPMGGKILLTTQIRPVANAVEGQMPPDTYKCLELGGLDQENTLKLFNHHAFGDLSPSDCFELQLIGEQIARKLKGCPLLARTIGRHLQGNTDHARWNTILNHDIHKVDDVATEIKKVLRLSYESLSNEVQVCFRYCSIFPPHYKFKMEEMVEMWVSSGLILQREDGINNREDIAIQELNVDTSEDYYVLHDGMHEFSCTVSIGECSRLKATDLGIGIPLTVRHLYVEGINAETINVISKFKYLRTLVVENKENSIQEEHANALKNSIEGRTSL |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_12g0014940 | OsAzu_12g0014940.01 | Chr12 | 20042668 | 20044436 | - | NAM | ||
| CDS seq | ATGGCGGAAGCTGCAGCTGTTTTCGCCGGGAAGGCCGTAGTGCAGCCGGCCATCACCTACCTCGTCAAAAAGATTGTCGATCGCATTCCCGACGGGGATCTGTGCAAGAGGCTGCAGCAGAAGCTGCCCTTTGTTGAAGCGATCCTCTACGCTGTTGATCGGCAGCAGACACTGAGCAATCCAAGTTTGTCTGAGGTGGTGTGGCAGCTCAGGGATGCCATCCAGGAGGCCGAAGATGCGCTCGATACACTGGAGTTCTTGGACCTCAAGAGCAGCGCCAATAATCGCAGCAAGGTGAGCTTATCATCCCTTTTGAGTAGCATCAGCAGGAAATTCCATGTTGCTGACTCCAGTAGAGCAACGGAGAATCTGAAAGATGCACTCAAGAATTTAGATGCAGTCCTTGACAATGCAGGGAGATCCCTCCCGGCCATATATCCCAGCTCGTGCTCTCATGGTAAAGCGCACATCCAAGATTCTGCCAGCATACAGGAGGTCACAAAAGAGTTGAGAACAACTATATTTGGTCGGCTCAAGGAAAAGGATGCAATAATCGATTGGCTCGGTGTTCTAACTCCAAATATTAGAGATCAAAAGCTCTCATTGTGTGCAATTGTTGGTGCTGGTGGTATGGGGAAAACAACACTTGCCCAGTTTGTCTGTCAAGATAAGAAGGTTCAAGATCATTTTGCTAACAAAATCATATGGGCAGACGTATCTAAGATCTTTGATCCTAAAGTGTTGGTGAGGAAGATCTCGGGATCATTCAACAGGTACAAAGCTAGCGCTGATGGCTTGGACACCATTATGACTGACAAATTTCTACTGGTCTTAGACGATGCACGGGATGATGCACAAAGTGAACGATGGCAACAATTTTTAGATCTAATCAGAAAAAATGCCCCAATGGGAGGTAAAATCTTGCTCACGACCCAAATAAGGCCAGTGGCTAATGCTGTTGAAGGCCAGATGCCTCCAGATACATATAAATGTTTGGAGCTGGGTGGTTTAGATCAAGAGAACACTCTGAAGCTCTTCAATCATCATGCGTTTGGTGACTTGAGTCCCAGTGACTGCTTCGAGCTTCAATTGATTGGTGAACAGATTGCCAGAAAACTCAAAGGATGCCCTTTGTTAGCAAGAACAATTGGCCGGCATCTACAAGGAAACACAGATCATGCCAGATGGAACACCATCTTAAATCACGATATCCACAAAGTTGATGATGTTGCCACTGAAATCAAGAAAGTTCTCAGACTGAGTTACGAAAGCCTGAGTAATGAAGTGCAGGTTTGCTTCCGGTACTGCAGCATATTTCCACCTCATTACAAGTTCAAGATGGAAGAGATGGTTGAGATGTGGGTGAGTTCAGGACTGATATTGCAAAGAGAGGATGGCATAAATAACCGGGAAGATATTGCTATACAAGAACTGAATGTTGATACTTCTGAAGATTACTATGTCTTGCATGATGGAATGCATGAATTTTCATGCACTGTCTCCATTGGGGAATGTTCAAGATTAAAAGCCACTGACCTTGGAATTGGCATACCTCTAACAGTGCGACACTTGTACGTAGAAGGCATAAATGCTGAAACTATAAATGTTATTTCCAAGTTCAAGTACCTGCGCACTCTTGTCGTAGAAAATAAGGAAAATTCCATCCAGGAAGAACATGCAAATGCTCTTAAAAATTCAATCGAAGGCAGGACAAGCTTGTGA
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| Protein seq | MAEAAAVFAGKAVVQPAITYLVKKIVDRIPDGDLCKRLQQKLPFVEAILYAVDRQQTLSNPSLSEVVWQLRDAIQEAEDALDTLEFLDLKSSANNRSKVSLSSLLSSISRKFHVADSSRATENLKDALKNLDAVLDNAGRSLPAIYPSSCSHGKAHIQDSASIQEVTKELRTTIFGRLKEKDAIIDWLGVLTPNIRDQKLSLCAIVGAGGMGKTTLAQFVCQDKKVQDHFANKIIWADVSKIFDPKVLVRKISGSFNRYKASADGLDTIMTDKFLLVLDDARDDAQSERWQQFLDLIRKNAPMGGKILLTTQIRPVANAVEGQMPPDTYKCLELGGLDQENTLKLFNHHAFGDLSPSDCFELQLIGEQIARKLKGCPLLARTIGRHLQGNTDHARWNTILNHDIHKVDDVATEIKKVLRLSYESLSNEVQVCFRYCSIFPPHYKFKMEEMVEMWVSSGLILQREDGINNREDIAIQELNVDTSEDYYVLHDGMHEFSCTVSIGECSRLKATDLGIGIPLTVRHLYVEGINAETINVISKFKYLRTLVVENKENSIQEEHANALKNSIEGRTSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.313198 | 3.611390 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0511500 | RBH | 0.259176 | 0.796494 | 0.825032 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g32670 | RBH | 0.145593 | 0.450421 | 0.256322 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0511500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0014960 | SBH | 0.0 | 5.793593 | 0.262648 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015080 | RBH | 0.111656 | 1.398868 | 0.555821 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0014980 | RBH | 0.000000 | 2.589387 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014790 | RBH | 0.164230 | 0.101743 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014330 | SBH | 1.816516 | 3.163459 | 3.415550 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0264800 | RBH | 5.563938 | 13.4197825 | 7.8305215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0014540 | SBH | 0.075205 | 0.238336 | 0.238006 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0294500 | RBH | 6.043876 | 12.2424215 | 10.2866005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0014680 | RBH | 0.105891 | 0.101005 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0014870 | RBH | 0.145662 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0014830 | RBH | 1.629682 | 5.231374 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0014730 | RBH | 0.000000 | 0.0 | 0.231307 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0014880 | RBH | 0.107623 | 1.279766 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014790 | RBH | 0.226492 | 0.492077 | 1.100415 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014570 | RBH | 0.494327 | 4.384967 | 2.009673 |
