Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_12g0012810 | OGI:12046400 | 12/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr12:17422702-17423470 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACGCCGAGAGCTCTCCACGACATGCGACTTGAGTTCTTGAATTAGGAGGGCGATTTGATGGCGGGCACATAGTTGCTTTGATCTTCCAGACCGCCTTCCAGATCAGCCTATCCTTGTCCTCTCTAGGATGAACTTGGTGCAGGAAGATGTCGATACAGTCCTCAATATCGTAGGCCAATTCCCGCACCTTGTCCTTCCACTCCTATGTCGATAAGCTTCTGGAGAAGGGAATTATGCTGCTCAGCTCATGCTTCAGGATTGCAATATCTTTTTGAACCCCCTTGAGTAGCTTGTATTCATAACTGAGAAGCGTGTCTGCATAACACGAAATAACTTAGGTCAGCTGTGGATATTGTGTGCATTGATGTTTTTGTGTCAGGTCAGTCACAAACAGAACAAGGACATTAAGTAGAGCCTGCAGAGAGTAGTTTCAGCTGGCATTTAGGGGACATTCAAAGTTTCGGTTGGTACATGCGACCTAACAACTTTAAATAAATTCTCCATGCTCTCATTGAACATGTTTCTCTTCTTATAAAAGATGTCACTCCCCTAAAGAAGGGGAGAGAAAATGGTGTGATCAAATTTTATATTTATAAGTGCAAAGCCTCACTCCAGTGCTGTTTTTAAAGCTGATCAGTCTATTAAGTAGTGTGCTCCTGTAAAAGCAGATTAATTGGACGTGAAAGGATCTAACAAATGGTAAAGTTCGCTTTTCCAATCTGGACTATCAAAAAAACCTGAATTTTCCCTTCTTCAAAACCAGTCAT
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| CDS seq | ATGACTGGTTTTGAAGAAGGGAAAATTCAGGAGTGGAAGGACAAGGTGCGGGAATTGGCCTACGATATTGAGGACTGTATCGACATCTTCCTGCACCAAGTTCATCCTAGAGAGGACAAGGATAGGCTGATCTGGAAGGCGGTCTGGAAGATCAAAGCAACTATGTGCCCGCCATCAAATCGCCCTCCTAATTCAAGAACTCAAGTCGCATGTCGTGGAGAGCTCTCGGCGTGA |
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| Protein seq | MTGFEEGKIQEWKDKVRELAYDIEDCIDIFLHQVHPREDKDRLIWKAVWKIKATMCPPSNRPPNSRTQVACRGELSA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_12g0012810 | OsAzu_12g0012810.01 | Chr12 | 17422702 | 17423470 | - | NAM | ||
| CDS seq | ATGACTGGTTTTGAAGAAGGGAAAATTCAGGAGTGGAAGGACAAGGTGCGGGAATTGGCCTACGATATTGAGGACTGTATCGACATCTTCCTGCACCAAGTTCATCCTAGAGAGGACAAGGATAGGCTGATCTGGAAGGCGGTCTGGAAGATCAAAGCAACTATGTGCCCGCCATCAAATCGCCCTCCTAATTCAAGAACTCAAGTCGCATGTCGTGGAGAGCTCTCGGCGTGA
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| Protein seq | MTGFEEGKIQEWKDKVRELAYDIEDCIDIFLHQVHPREDKDRLIWKAVWKIKATMCPPSNRPPNSRTQVACRGELSA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 2.027746 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0273300 | SBH | 0.314198 | 0.544434 | 0.288455 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g28100 | SBH | 0.145001 | 0.202615 | 0.663446 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0273300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0012820 | RBH | 0.182238 | 5.417646 | 3.334142 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009210 | SBH | 0.000000 | 0.683538 | 0.598482 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009150 | SBH | 0.709560 | 3.923890 | 4.931050 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008980 | SBH | 0.0 | 0.206512 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008810 | SBH | 0.831184 | 1.238415 | 1.715209 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0234800 | RBH | 1.978378 | 15.770687 | 11.114108 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008820 | SBH | 0.058034 | 0.255694 | 0.476529 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0256100 | SBH | 0.1069475 | 10.489381 | 0.1049745 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008750 | SBH | 0.000000 | 0.213022 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009000 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008950 | SBH | 2.779466 | 12.357338 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008930 | SBH | 0.444415 | 0.0 | 0.405293 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009030 | SBH | 0.235259 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008820 | SBH | 0.333200 | 1.206500 | 0.120301 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0012360 | SBH | 0.423249 | 7.913693 | 2.159001 |
