Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_11g0024170 | OGI:11081220 | 13/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr11:28956269-28957443 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAATTGACCACCACCTCCTTGACCTCCTCTCCCACCCCACAACGCCACCTCGGACCCGCCAACATGTGCCACATTGTCTCTGCAGCTCTTAGCTAGTACTTCTTGTTTCATAATAATAGTTTACAAACATAGGAAAATAATACTTTTATCAAACTGTATTTCAAGATCATTTTCAAACATAGAAAAATAATACTCATATCATTTTCAAATATTGATACCCAATACATAAACATAACATGTAACCAAAGTTTGAAATGAATTATCGACTTAAGGCAACTCCATAAATTCCATTTATTTGTGACTTGGTAGTACAAGGATTCTTCATTATTGACATACATACCCATGAAATATACCATTTACAGTATGGGGAGATCTATAGACGACTCGATATGTGACTTTGGCTCCATATAATAACATCTAGAAAGTCTTTTATTCAGTTTTCTCTTACAGACCAACAAAGAATACATATGGGAGCAAACAACTCGACATCTCAACACACACCTTGGACTCCAACTTCAGAAAGCTTAAATCAAGCAAAAGCAGCTATTGTATATATTCTTGAAAATATGGACCTGTGTAATTAATCCGCCGCTATATAAGAACGTCATATGAGACATTCGACACTAGATCAGTTTTAAGCATGTTCAGGGCCAGACTTGATAGTAGGATTCTATTTGGAGCCATTATGTTTTTCTTCACCTCCTTTCTTCCAGAAGAAAAGAATAACAACAAAGCCCAACACAGGTAAGAGAAGCAGGATGGCATCCTTGAATGTGCACCAATTCCGAGTACTGCCTGCCGCGTAGGCTCCCAGGAGGGCAAGCATGTCCAGCAACATGGCTGTGTGCATTGGCCAAAGAGGCAATTTATGTTCATCACCCTTGGTCATCCTTCGAAGCAGCAAAACAATGACAGTGATGGATGCCATGAAGGAAGTGGAGTTGCTATAGAAAAAAGCATTGTACCGACGCTTGTCGATGTCGTAGAGGACCGGGTTGCCAGCAGAGTGCCCATTACCTTCATCCCTCCACAAGCCACCAGGTGGTTTTAGGCCCGTGAGGTAGGCCACACTCGCAGCCAATATTCCTGCTAGCATTAAGTACTTGGCCATCATGTCGGCTTTCTTTTTCATGTCAGCTTCCTGTTGATCTTGTGTTTGTCTTGGTGTGTCCAT
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| CDS seq | ATGGACACACCAAGACAAACACAAGATCAACAGGAAGCTGACATGAAAAAGAAAGCCGACATGATGGCCAAGTACTTAATGCTAGCAGGAATATTGGCTGCGAGTGTGGCCTACCTCACGGGCCTAAAACCACCTGGTGGCTTGTGGAGGGATGAAGGTAATGGGCACTCTGCTGGCAACCCGGTCCTCTACGACATCGACAAGCGTCGGTACAATGCTTTTTTCTATAGCAACTCCACTTCCTTCATGGCATCCATCACTGTCATTGTTTTGCTGCTTCGAAGGATGACCAAGGGTGATGAACATAAATTGCCTCTTTGGCCAATGCACACAGCCATGTTGCTGGACATGCTTGCCCTCCTGGGAGCCTACGCGGCAGGCAAGACAATGTGGCACATGTTGGCGGGTCCGAGGTGGCGTTGTGGGGTGGGAGAGGAGGTCAAGGAGGTGGTGGTCAATTGA
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| Protein seq | MDTPRQTQDQQEADMKKKADMMAKYLMLAGILAASVAYLTGLKPPGGLWRDEGNGHSAGNPVLYDIDKRRYNAFFYSNSTSFMASITVIVLLLRRMTKGDEHKLPLWPMHTAMLLDMLALLGAYAAGKTMWHMLAGPRWRCGVGEEVKEVVVN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_11g0024170 | OsAzu_11g0024170.01 | Chr11 | 28956269 | 28957443 | - | NAM | ||
| CDS seq | ATGGACACACCAAGACAAACACAAGATCAACAGGAAGCTGACATGAAAAAGAAAGCCGACATGATGGCCAAGTACTTAATGCTAGCAGGAATATTGGCTGCGAGTGTGGCCTACCTCACGGGCCTAAAACCACCTGGTGGCTTGTGGAGGGATGAAGGTAATGGGCACTCTGCTGGCAACCCGGTCCTCTACGACATCGACAAGCGTCGGTACAATGCTTTTTTCTATAGCAACTCCACTTCCTTCATGGCATCCATCACTGTCATTGTTTTGCTGCTTCGAAGGATGACCAAGGGTGATGAACATAAATTGCCTCTTTGGCCAATGCACACAGCCATGTTGCTGGACATGCTTGCCCTCCTGGGAGCCTACGCGGCAGGCAAGACAATGTGGCACATGTTGGCGGGTCCGAGGTGGCGTTGTGGGGTGGGAGAGGAGGTCAAGGAGGTGGTGGTCAATTGA
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| Protein seq | MDTPRQTQDQQEADMKKKADMMAKYLMLAGILAASVAYLTGLKPPGGLWRDEGNGHSAGNPVLYDIDKRRYNAFFYSNSTSFMASITVIVLLLRRMTKGDEHKLPLWPMHTAMLLDMLALLGAYAAGKTMWHMLAGPRWRCGVGEEVKEVVVN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0682000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45580 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0682000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0012220 | SBH | 0.036248 | 0.500697 | 0.212350 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024120 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023670 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023520 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023980 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0176900 | SBH | 4.1231745 | 0.305001 | 0.0181225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024340 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0172500 | SBH | 5.147779 | 0.1347395 | 0.460024 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007650 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024230 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023640 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007590 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023870 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023880 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012250 | SBH | 0.0 | 0.0 | 0.618128 |
