Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_11g0020400 | OGI:11069240 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr11:24444838-24445511 | ||||||||
| Gene Symbol | UBP1-10, OsUBP1-10 | ||||||||||
| DNA seq | AAAGTTGTTACGCATGTACTCTGGAAGGAGCTCTTAACTGCGGCCATGCCACAGGGATAACAGCGCAAGGCTCTGTGCGATGAACCGGTACATGGACCGCAGTAGCAGAACACACCAAATCGACCAGAGGGGCCTCACAAACATGGAGCCTCGGGTGCGATTCAAGAACGCTACTCCCAGAAACTTGATCACATTTCCCAGCTCAGTGATATGTCGTACCCGGTCAGGTATACCGTACCTGGAGAGATAGCCGATGCTAGCATGAAGACTCACCAGCACAATTGACCAGACAGGGAAGAGCTCATTGCTGAAAGGCGCAGCTTGCATGGTGCCCAACAGATACAGCACTATGCGGTCAGAGATACGATCGACCTTGTCCAAAGTGGACATGGTGCCAGAGCCGCGAGACCGGGCACGGTAGATGTCCATGGTAAACATCAGAATGAACGCCACCGTAACAAACGACACCAGTGATTCGATGCGAATCAAGACGTACACGTCCTCGCGCAACGTAACGAACCAGGATGAAATGACGGCACGAGGGTCCACCATATTCAGAGTTGTGTTATTACGTTCTTCCGGGTTCCTGCACGCGGCCACAGGCAATACTTGTATATATCAACCTGGATGTTAATTTAGATACTAGTAGTCCATAACCCATGCATTCGTATATG
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| CDS seq | ATGGTGGACCCTCGTGCCGTCATTTCATCCTGGTTCGTTACGTTGCGCGAGGACGTGTACGTCTTGATTCGCATCGAATCACTGGTGTCGTTTGTTACGGTGGCGTTCATTCTGATGTTTACCATGGACATCTACCGTGCCCGGTCTCGCGGCTCTGGCACCATGTCCACTTTGGACAAGGTCGATCGTATCTCTGACCGCATAGTGCTGTATCTGTTGGGCACCATGCAAGCTGCGCCTTTCAGCAATGAGCTCTTCCCTGTCTGGTCAATTGTGCTGGTGAGTCTTCATGCTAGCATCGGCTATCTCTCCAGGTACGGTATACCTGACCGGGTACGACATATCACTGAGCTGGGAAATGTGATCAAGTTTCTGGGAGTAGCGTTCTTGAATCGCACCCGAGGCTCCATGTTTGTGAGGCCCCTCTGGTCGATTTGGTGTGTTCTGCTACTGCGGTCCATGTACCGGTTCATCGCACAGAGCCTTGCGCTGTTATCCCTGTGGCATGGCCGCAGTTAA
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| Protein seq | MVDPRAVISSWFVTLREDVYVLIRIESLVSFVTVAFILMFTMDIYRARSRGSGTMSTLDKVDRISDRIVLYLLGTMQAAPFSNELFPVWSIVLVSLHASIGYLSRYGIPDRVRHITELGNVIKFLGVAFLNRTRGSMFVRPLWSIWCVLLLRSMYRFIAQSLALLSLWHGRS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_11g0020400 | OsAzu_11g0020400.01 | Chr11 | 24444838 | 24445511 | - | NAM | ||
| CDS seq | ATGGTGGACCCTCGTGCCGTCATTTCATCCTGGTTCGTTACGTTGCGCGAGGACGTGTACGTCTTGATTCGCATCGAATCACTGGTGTCGTTTGTTACGGTGGCGTTCATTCTGATGTTTACCATGGACATCTACCGTGCCCGGTCTCGCGGCTCTGGCACCATGTCCACTTTGGACAAGGTCGATCGTATCTCTGACCGCATAGTGCTGTATCTGTTGGGCACCATGCAAGCTGCGCCTTTCAGCAATGAGCTCTTCCCTGTCTGGTCAATTGTGCTGGTGAGTCTTCATGCTAGCATCGGCTATCTCTCCAGGTACGGTATACCTGACCGGGTACGACATATCACTGAGCTGGGAAATGTGATCAAGTTTCTGGGAGTAGCGTTCTTGAATCGCACCCGAGGCTCCATGTTTGTGAGGCCCCTCTGGTCGATTTGGTGTGTTCTGCTACTGCGGTCCATGTACCGGTTCATCGCACAGAGCCTTGCGCTGTTATCCCTGTGGCATGGCCGCAGTTAA
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| Protein seq | MVDPRAVISSWFVTLREDVYVLIRIESLVSFVTVAFILMFTMDIYRARSRGSGTMSTLDKVDRISDRIVLYLLGTMQAAPFSNELFPVWSIVLVSLHASIGYLSRYGIPDRVRHITELGNVIKFLGVAFLNRTRGSMFVRPLWSIWCVLLLRSMYRFIAQSLALLSLWHGRS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 4.795160 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0618850 | SBH | 0.152685 | 0.313165 | 0.353391 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g40450 | SBH | 0.126896 | 0.068515 | 0.020786 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0618850 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0020530 | RBH | 0.080126 | 0.703711 | 1.533318 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0004790 | SBH | 0.000000 | 0.202248 | 0.725389 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004780 | SBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0004690 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0004600 | SBH | 0.766568 | 0.0 | 1.450986 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0362500 | SBH | 0.3310975 | 0.805156 | 0.2905635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020890 | RBH | 0.0 | 0.152491 | 0.609901 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0380200 | RBH | 0.655395 | 0.096158 | 4.0214475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0004600 | SBH | 0.0 | 0.070604 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0004670 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020400 | RBH | 0.000000 | 15.936721 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0004650 | SBH | 0.080526 | 0.0 | 0.312934 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004680 | SBH | 0.0 | 0.539354 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020290 | SBH | 0.038626 | 0.432444 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020650 | SBH | 0.121391 | 0.0 | 0.400977 |
