Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0004680 | OGI:11010370 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:3524089-3526640 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaactcctgaagctgctggaaggtatgccattcttttcttcattctcaccatgtgattgctttgttgtatcttttggaccatttctgtgctcccttcccctcctaaaccttcttgtcttgagctcttctgaactctcgattccatcctcattagctggctcatccataggtataacattgctggtttcagtactgctttcttgaggtacttgagaattgttttcaaatgcttcatccttgtgccacaggctgctcttttcgatgccacagtgccaaagcaatgcccagattagagtaatgaactcgcctccagactcgagattattcttatgatctgatgcattccagcttggggcgatgtgcacaagtaaatcagcccaaacctcagctaggatcttccaacaggctTCAtcatccttcattccgatcaggtccttggctagagtaacaccttgctgcagtatgttcattttcaatttctcatctacactgcttggtgttgcttgcagtgcaattcccatgagtttgttatatctacaccatttcaggttacaatccttgagttgttcgcgagcatgctttaaggtttccacaaatagcacttcagggacaagaaaactatctggtaacagttcagaacgaaaaacctgtagataagcgcaataccgtgacaagctgatcgcgatatggtagtttgttttgagcccagcagacaggccactgttctcacctataaggtatgggtaggaagagaagcagcagagcttttttttcatgtacaaccaggcagaacacaagaacccaggtttggttaagtcaaTtttcttgtcatgcgcaagcttgatctcgcagaggctggtcgcgatgtgccacactagaatgacttgagagcatgtgcgtagcttaaggcaggcccattcataccgctcaaactggatggttgagcttctcagtgatgggatttctctcggtaacggtctactggtgaggccgatgcggcggattgcctgtaggattgctagctttacacattgagggatcttgatggcttcaccagtttttttcccatccaatttgccttcaatctttcccagggtgatgacatttgccagtttccataatgttggcttgtaagtaatttgctgcaagaagtcatactgatcgatacgtccatgccatggttcgccaatttttgactcgaaaaatgaccttactagatgcttcgtgagtcgttcactcacaaaccaagcctggtcctgcacatacttgcacaggacaagtaatcttgtccagtttgatacaggtatgtgactatttcccagatctccttgaacatcacacagaacatgaacacccatgtcatgatgatgtcaaaattacatccatccacccagagcacaagattgccctctgggggttgatagaccttgcggattcctacggccagccAGaaggcaatggcgaaagttgcggcggacaggagcagactcaaacagagagaaccaagcccttcccagaagaccaatgggtagAgggtgtagaagtagtctctgacaaatgcaagctccaactcaaggatcctgaatgtccgctcagcctcgacagcctggtgctcgtccaccttctcctcctgccgttgtcctcggctatcaggaatgaactccgagatgattagatgctgcatgtcgttaatgctatctttgttcagtgtcacatcttcaagcctgcaccgaagcagccttgacagtgagaaggccatgctcaagtctttaaacttactgtctccatctctgttgttcatcccctttcaattgtactcctgaatcttgcccagtgtgaccagtgactgagcgctgctgttgctgatatttatagtgtattgaggcttctttaaggtgatgtctttgttggactctccgcagatcagatattttttgcctggcatcatagttgatgtgTTtctatcatcatgattgacgcctgtctcctggtcctcaggaatgaaggtgcgcatgtactcaggaataaactctgagctccggccatgccacaaggattcgtttgccatgccatgtgcgaagaaccggtacatgctcttcagttgcaggatggcccaaaatgaccagagtggccttgcatacttcaagccacgagtgccagccaagacccctgcccctatgaacttgatcacatttgccagctccatgaattgtcgatcacggtctgagatgccatacccagagagatagccgaggctggtacggagactcaccagcacgatggcccagaccgggaacagctcattctcaaacctcgcagattgcatggctccaatgaggtacactactatctgatcagataattcgtcgatgctttcaagaatggtggtcaagattgagctacgagtttggcagcggtagaagtctatgatgaacattgcaaggaatatcaatgtcaccagtgccaccaaggactcaatgcggatcaagacatagatgttctctttcagcatgacaaaaaatgattcaatcacagcacggacgtccaccat
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| CDS seq | atggtggacgtccgtgctgtgattgaatcattttttgtcatgctgaaagagaacatctatgtcttgatccgcattgagtccttggtggcactggtgacattgatattccttgcaatgttcatcatagacttctaccgctgccaaactcgtagctcaatcttgaccaccattcttgaaagcatcgacgaattatctgatcagatagtagtgtacctcattggagccatgcaatctgcgaggtttgagaatgagctgttcccggtctgggccatcgtgctggtgagtctccgtaccagcctcggctatctctctgggtatggcatctcagaccgtgatcgacaattcatggagctggcaaatgtgatcaagttcataggggcaggggtcttggctggcactcgtggcttgaagtatgcaaggccactctggtcattttgggccatcctgcaactgaagagcatgtaccggttcttcgcacatggcatggcaaacgaatccttgtggcatggccggagctcagagtttattcctgagtacatgcgcaccttcattcctgaggaccaggagacaggcgtcaatcatgatgatagaAAcacatcaactatgatgccaggcaaaaaatatctgatctgcggagagtccaacaaagacatcaccttaaagaagcctcaatacactataaatatcagcaacagcagcgctcagtcactggtcacactgggcaagattcaggagcttgaagatgtgacactgaacaaagatagcattaacgacatgcagcatctaatcatctcggagttcattcctgatagccgaggacaacggcaggaggagaaggtggacgagcaccaggctgtcgaggctgagcggacattcaggatccttgagttggagcttgcatttgtcagagactacttctacacccTctacccattggtcttctgggaagggcttggttctctctgtttgagtctgctcctgtccgccgcaactttcgccattgccttCTggctggccgtaggaatccgcaaggaccaggcttggtttgtgagtgaacgactcacgaagcatctagtaaggtcatttttcgagtcaaaaattggcgaaccatggcatggacgtatcgatcagtatgacttcttgcagcaaattacttacaagccaacattatggaaactggcaaatgtcatcaccctgggaaagattgaaggcaaattggatgggaaaaaaactggtgaagccatcaagatccctcaatgtgtaaagctagcaatcctacaggcaatccgccgcatcggcctcaccagtagaccgttaccgagagaaatcccatcactgagaagctcaaccatccagtttgagcggtatgaatgggcctgccttaagctacgcacatgctctcaagtcattctagtgtggcacatcgcgaccagcctctgcgagatcaagcttgcgcatgacaagaaaAttgacttaaccaaacctgggttcttgtgttctgcctggttgtacatgaaaaaaaagctctgctgcttctcttcctacccataccttataggtgagaacagtggcctgtctgctgggctcaaaacaaactaccatatcgcgatcagcttgtcacggtattgcgcttatctacaggtttttcgttctgaactgttaccagatagttttcttgtccctgaagtgctatttgtggaaaccttaaagcatgctcgcgaacaactcaaggattgtaacctgaaatggtgtagatataacaaactcatgggaattgcactgcaagcaacaccaagcagtgtagatgagaaattgaaaatgaacatactgcagcaaggtgttactctagccaaggacctgatcggaatgaaggatgaTGAagcctgttggaagatcctagctgaggtttgggctgatttacttgtgcacatcgccccaagctggaatgcatcagatcataagaataatctcgagtctggaggcgagttcattactctaatctgggcattgctttggcactgtggcatcgaaaagagcagcctgtggcacaaggatgaagcatttgaaaacaattctcaagtacctcaagaaagcagtactgaaaccagcaatgttatacctatggatgagccagctaatgaggatggaatcgagagttcagaagagctcaagacaagaaggtttaggaggggaagggagcacagaaatggtccaaaagatacaacaaagcaatcacatggtgagaatgaagaaaagaatggcataccttccagcagcttcaggagttaa
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| Protein seq | MVDVRAVIESFFVMLKENIYVLIRIESLVALVTLIFLAMFIIDFYRCQTRSSILTTILESIDELSDQIVVYLIGAMQSARFENELFPVWAIVLVSLRTSLGYLSGYGISDRDRQFMELANVIKFIGAGVLAGTRGLKYARPLWSFWAILQLKSMYRFFAHGMANESLWHGRSSEFIPEYMRTFIPEDQETGVNHDDRNTSTMMPGKKYLICGESNKDITLKKPQYTINISNSSAQSLVTLGKIQELEDVTLNKDSINDMQHLIISEFIPDSRGQRQEEKVDEHQAVEAERTFRILELELAFVRDYFYTLYPLVFWEGLGSLCLSLLLSAATFAIAFWLAVGIRKDQAWFVSERLTKHLVRSFFESKIGEPWHGRIDQYDFLQQITYKPTLWKLANVITLGKIEGKLDGKKTGEAIKIPQCVKLAILQAIRRIGLTSRPLPREIPSLRSSTIQFERYEWACLKLRTCSQVILVWHIATSLCEIKLAHDKKIDLTKPGFLCSAWLYMKKKLCCFSSYPYLIGENSGLSAGLKTNYHIAISLSRYCAYLQVFRSELLPDSFLVPEVLFVETLKHAREQLKDCNLKWCRYNKLMGIALQATPSSVDEKLKMNILQQGVTLAKDLIGMKDDEACWKILAEVWADLLVHIAPSWNASDHKNNLESGGEFITLIWALLWHCGIEKSSLWHKDEAFENNSQVPQESSTETSNVIPMDEPANEDGIESSEELKTRRFRRGREHRNGPKDTTKQSHGENEEKNGIPSSSFRS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0004680 | OsLaMu_11g0004680.01 | Chr11 | 3524089 | 3526640 | - | NAM | ||
| CDS seq | atggtggacgtccgtgctgtgattgaatcattttttgtcatgctgaaagagaacatctatgtcttgatccgcattgagtccttggtggcactggtgacattgatattccttgcaatgttcatcatagacttctaccgctgccaaactcgtagctcaatcttgaccaccattcttgaaagcatcgacgaattatctgatcagatagtagtgtacctcattggagccatgcaatctgcgaggtttgagaatgagctgttcccggtctgggccatcgtgctggtgagtctccgtaccagcctcggctatctctctgggtatggcatctcagaccgtgatcgacaattcatggagctggcaaatgtgatcaagttcataggggcaggggtcttggctggcactcgtggcttgaagtatgcaaggccactctggtcattttgggccatcctgcaactgaagagcatgtaccggttcttcgcacatggcatggcaaacgaatccttgtggcatggccggagctcagagtttattcctgagtacatgcgcaccttcattcctgaggaccaggagacaggcgtcaatcatgatgatagaAAcacatcaactatgatgccaggcaaaaaatatctgatctgcggagagtccaacaaagacatcaccttaaagaagcctcaatacactataaatatcagcaacagcagcgctcagtcactggtcacactgggcaagattcaggagcttgaagatgtgacactgaacaaagatagcattaacgacatgcagcatctaatcatctcggagttcattcctgatagccgaggacaacggcaggaggagaaggtggacgagcaccaggctgtcgaggctgagcggacattcaggatccttgagttggagcttgcatttgtcagagactacttctacacccTctacccattggtcttctgggaagggcttggttctctctgtttgagtctgctcctgtccgccgcaactttcgccattgccttCTggctggccgtaggaatccgcaaggaccaggcttggtttgtgagtgaacgactcacgaagcatctagtaaggtcatttttcgagtcaaaaattggcgaaccatggcatggacgtatcgatcagtatgacttcttgcagcaaattacttacaagccaacattatggaaactggcaaatgtcatcaccctgggaaagattgaaggcaaattggatgggaaaaaaactggtgaagccatcaagatccctcaatgtgtaaagctagcaatcctacaggcaatccgccgcatcggcctcaccagtagaccgttaccgagagaaatcccatcactgagaagctcaaccatccagtttgagcggtatgaatgggcctgccttaagctacgcacatgctctcaagtcattctagtgtggcacatcgcgaccagcctctgcgagatcaagcttgcgcatgacaagaaaAttgacttaaccaaacctgggttcttgtgttctgcctggttgtacatgaaaaaaaagctctgctgcttctcttcctacccataccttataggtgagaacagtggcctgtctgctgggctcaaaacaaactaccatatcgcgatcagcttgtcacggtattgcgcttatctacaggtttttcgttctgaactgttaccagatagttttcttgtccctgaagtgctatttgtggaaaccttaaagcatgctcgcgaacaactcaaggattgtaacctgaaatggtgtagatataacaaactcatgggaattgcactgcaagcaacaccaagcagtgtagatgagaaattgaaaatgaacatactgcagcaaggtgttactctagccaaggacctgatcggaatgaaggatgaTGAagcctgttggaagatcctagctgaggtttgggctgatttacttgtgcacatcgccccaagctggaatgcatcagatcataagaataatctcgagtctggaggcgagttcattactctaatctgggcattgctttggcactgtggcatcgaaaagagcagcctgtggcacaaggatgaagcatttgaaaacaattctcaagtacctcaagaaagcagtactgaaaccagcaatgttatacctatggatgagccagctaatgaggatggaatcgagagttcagaagagctcaagacaagaaggtttaggaggggaagggagcacagaaatggtccaaaagatacaacaaagcaatcacatggtgagaatgaagaaaagaatggcataccttccagcagcttcaggagttaa
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| Protein seq | MVDVRAVIESFFVMLKENIYVLIRIESLVALVTLIFLAMFIIDFYRCQTRSSILTTILESIDELSDQIVVYLIGAMQSARFENELFPVWAIVLVSLRTSLGYLSGYGISDRDRQFMELANVIKFIGAGVLAGTRGLKYARPLWSFWAILQLKSMYRFFAHGMANESLWHGRSSEFIPEYMRTFIPEDQETGVNHDDRNTSTMMPGKKYLICGESNKDITLKKPQYTINISNSSAQSLVTLGKIQELEDVTLNKDSINDMQHLIISEFIPDSRGQRQEEKVDEHQAVEAERTFRILELELAFVRDYFYTLYPLVFWEGLGSLCLSLLLSAATFAIAFWLAVGIRKDQAWFVSERLTKHLVRSFFESKIGEPWHGRIDQYDFLQQITYKPTLWKLANVITLGKIEGKLDGKKTGEAIKIPQCVKLAILQAIRRIGLTSRPLPREIPSLRSSTIQFERYEWACLKLRTCSQVILVWHIATSLCEIKLAHDKKIDLTKPGFLCSAWLYMKKKLCCFSSYPYLIGENSGLSAGLKTNYHIAISLSRYCAYLQVFRSELLPDSFLVPEVLFVETLKHAREQLKDCNLKWCRYNKLMGIALQATPSSVDEKLKMNILQQGVTLAKDLIGMKDDEACWKILAEVWADLLVHIAPSWNASDHKNNLESGGEFITLIWALLWHCGIEKSSLWHKDEAFENNSQVPQESSTETSNVIPMDEPANEDGIESSEELKTRRFRRGREHRNGPKDTTKQSHGENEEKNGIPSSSFRS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.539354 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0618500 | SBH | 0.208884 | 0.154744 | 0.557189 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g06990 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0618500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0004770 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0004790 | RBH | 0.000000 | 0.202248 | 0.725389 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004780 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0004690 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0004600 | RBH | 0.766568 | 0.0 | 1.450986 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0059400 | RBH | 0.154042 | 0.9868665 | 9.699358 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0004670 | RBH | 0.0 | 0.0 | 0.070405 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0059800 | RBH | 0.2619915 | 1.840085 | 6.8791555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0004600 | RBH | 0.0 | 0.070604 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0004670 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0004670 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0004650 | RBH | 0.080526 | 0.0 | 0.312934 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0004700 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G004730 | RBH | 0.0 | 0.0 | 0.463046 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0004650 | RBH | 0.0 | 0.0 | 0.577352 |
