Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_11g0014620 | OGI:11051730 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr11:17989432-17989957 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGGGTTCAGACAAATCTGATTTGGATTGGCAAAGTCGCTAAAACTAGTGACTAGTGTAAAATACTATGACAAATCACAGCACAGACAACGTGCTAGCTACTACACCACTAATGATAGTCTAATAGAGAGTTCCTTAGCAGATGCAGCGACCGCGGACTAATTAATTTATTTACCTCCTCGCGCTTGCGTTTGCCGCCGCCGCCGCCGCCGCCATGAACGGCGGCAAGCCGCTCGAGCGCCTCCACCTTGCGCCGGTTCACCTCGTACTCGTACTCCTCCACCACGTCCTCGGCGTCGTAGGCGAGCTCCTTGAGCTCCTCCAGCCGCAGCTTGGCGGACTCCTCGCGGATGTTCCAGCGCTGCTCCGCGTCGCGCAGCGTGGCGTGGATCCGGCGCATGGTCCGCTCCAGCTTCCGGAGCTCCTCCAGCACGTCCGGGCCCTGGCTCGACCCCGCCGCCGGCAGCAGGGAGGAGAGGTTGCCGATGGCCCATTTCACGGCCGACGATGCGAACAGTCCGGCCAT
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| CDS seq | ATGGCCGGACTGTTCGCATCGTCGGCCGTGAAATGGGCCATCGGCAACCTCTCCTCCCTGCTGCCGGCGGCGGGGTCGAGCCAGGGCCCGGACGTGCTGGAGGAGCTCCGGAAGCTGGAGCGGACCATGCGCCGGATCCACGCCACGCTGCGCGACGCGGAGCAGCGCTGGAACATCCGCGAGGAGTCCGCCAAGCTGCGGCTGGAGGAGCTCAAGGAGCTCGCCTACGACGCCGAGGACGTGGTGGAGGAGTACGAGTACGAGGTGAACCGGCGCAAGGTGGAGGCGCTCGAGCGGCTTGCCGCCGTTCATGGCGGCGGCGGCGGCGGCGGCAAACGCAAGCGCGAGGAGCGACTTTGCCAATCCAAATCAGATTTGTCTGAACCCTGA |
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| Protein seq | MAGLFASSAVKWAIGNLSSLLPAAGSSQGPDVLEELRKLERTMRRIHATLRDAEQRWNIREESAKLRLEELKELAYDAEDVVEEYEYEVNRRKVEALERLAAVHGGGGGGGKRKREERLCQSKSDLSEP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_11g0014620 | OsAzu_11g0014620.01 | Chr11 | 17989432 | 17989957 | - | NAM | ||
| CDS seq | ATGGCCGGACTGTTCGCATCGTCGGCCGTGAAATGGGCCATCGGCAACCTCTCCTCCCTGCTGCCGGCGGCGGGGTCGAGCCAGGGCCCGGACGTGCTGGAGGAGCTCCGGAAGCTGGAGCGGACCATGCGCCGGATCCACGCCACGCTGCGCGACGCGGAGCAGCGCTGGAACATCCGCGAGGAGTCCGCCAAGCTGCGGCTGGAGGAGCTCAAGGAGCTCGCCTACGACGCCGAGGACGTGGTGGAGGAGTACGAGTACGAGGTGAACCGGCGCAAGGTGGAGGCGCTCGAGCGGCTTGCCGCCGTTCATGGCGGCGGCGGCGGCGGCGGCAAACGCAAGCGCGAGGAGCGACTTTGCCAATCCAAATCAGATTTGTCTGAACCCTGA
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| Protein seq | MAGLFASSAVKWAIGNLSSLLPAAGSSQGPDVLEELRKLERTMRRIHATLRDAEQRWNIREESAKLRLEELKELAYDAEDVVEEYEYEVNRRKVEALERLAAVHGGGGGGGKRKREERLCQSKSDLSEP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0492100 | SBH | 0.452033 | 0.992897 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g30210 | SBH | 0.526924 | 2.218331 | 0.100952 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0492100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014600 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014560 | SBH | 0.143198 | 0.0 | 0.299996 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0014490 | RBH | 3.506751 | 0.0 | 7.995563 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014280 | RBH | 0.577491 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014470 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0274600 | RBH | 0.011531 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0014850 | RBH | 0.659324 | 0.0 | 0.100748 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0288100 | SBH | 5.539981 | 0.314962 | 4.7651745 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014790 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014750 | RBH | 0.127257 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014410 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014240 | RBH | 1.026320 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014550 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G014350 | RBH | 1.621651 | 0.0 | 0.500621 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014610 | RBH | 1.992854 | 0.0 | 0.249307 |
