Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_11g0014410 | OGI:08000190 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr11:17571886-17573512 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGGTCTTCTTCTGAGTCGTTTTCTTCTCCAGTGTCGTCTTCAATGTTAATGTATCCCTTTGTTGTTTGACTACCACGTTGAATTTTTCTCGATGAAGTTGTCTCATCTTTATCTCCATCACTATCTTCTGGTTCTTGTTTGATATGCACATATAAGCTGGATTCTCTTCTGTTAGGTGGATAGTTCAATTTATCCTTTTCATTGTTTAGCAAATCCTATAAAAAATAATACAAAATCAGAATATAGTGATAGAAACAAAATCATTAATATTTGATTTTATACAGAGGAAATGCACACTGACCTTAGCTTTATCATCCAAGTGTTGCATTTCAAGTTTATCATCAGGCACAAATGTTCTTCTTACTATATAGTTTGACTTGCCTTGAGTTAAATTTTCAATATTGAGCTTGAGTTGAAATATAAATGTCCTTCCACATAATTGTTGTATAATTGTAGGAACTTCTTCACATCTCCCATCCAGTGAATTGAGCAAGCTTGAGATAGATGTATTCAACATTCTTTGTGCCACATCATCAAATAATGTGCAATTTGCAGTAGTCGTATGATCACTTATACAGAGTCGAATAAAATACCTAATGTAGCAGTGATGTTAGTTCAATATGAGAAGTGCAAAATAATGTTGTTGAAATCAATTGGGTATGCTTAGTTGCTTACCGAGGTTTAGTATTTTCTGGATACATCTTGCACTTTTCACAATAGTACTTGTCGATTTTTTTTACAACTTTTTTGTTGCAATCATTGCATGACATGTACCACCATGTGACATCTTGTAAATGATCAATCGTAGCTTTGGTCGTACAAATGAAATCGTGTTAAAAAGGAAAAAAAACATTGTATTAGTTTTTTGGGTGGAACATAACATTAATAAAATGATGTTACAGTACAGTTCAGATTTATGGATTTAGCGCAAATAGTGCATCTAATAAGAAGAGTGAATTCTTACCTGACTTTTTGTGTCATCATGTCCCATGTTTGTAATCTGTTGCAAGGTTTTCCTGTTATAGAACATTTGTTCTTCCAATGTACCTTGTGTACTTTTATCCACCTCCATGAGTTTTGGCAAATTTTGTTCATCCGAGTGCCTATATAATTAGATAGCAATAATATAGCAGGCATTTTAATGTTGGAAAGTAATAAGGGGTTAAAGTTTTCATTCAATCAAGAAATAAGTAGGTAAATAAAGGAAACAAACCTTGAAATAATTTTCCAGGTCTCAGGTATATTTATATCTGTATATAATCTTGTGGCACTGCTTGACCTCAAAGACAGACCTATTAAATACAAAATTACGAGTTACCTTTGTACATATGCTAAAAGTACTATAGAAAACATTGGAATTACCATTAAATTCTTGAACTGTTGTTGATGTAACAACCACAACAGTGTGGTTGCCAATCACATCTTCATTCAAAGAATGAGCTAACTGCCCCCATAACGTCACTCTGATTTTAGCACCACTGTAGATAACATTGTAAAAGACTTAGATAAGATTATGAAAGATATCAAAAATCGATTGAAAGGAAAGACAGCCATGTTTCTTACTCTAATAATAGAAGTTCAATCTCACGGATATCTTTAGGCCGTGGGTTTGTAGAGTTCTTCAT
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| CDS seq | ATGAAGAACTCTACAAACCCACGGCCTAAAGATATCCGTGAGATTGAACTTCTATTATTAGATGGTGCTAAAATCAGAGTGACGTTATGGGGGCAGTTAGCTCATTCTTTGAATGAAGATGTGATTGGCAACCACACTGTTGTGGTTGTTACATCAACAACAGTTCAAGAATTTAATGGTCTGTCTTTGAGGTCAAGCAGTGCCACAAGATTATATACAGATATAAATATACCTGAGACCTGGAAAATTATTTCAAGGCACTCGGATGAACAAAATTTGCCAAAACTCATGGAGGTGGATAAAAGTACACAAGGTACATTGGAAGAACAAATGTTCTATAACAGGAAAACCTTGCAACAGATTACAAACATGGGACATGATGACACAAAAACTACGATTGATCATTTACAAGATGTCACATGGTGGTACATGTCATGCAATGATTGCAACAAAAAAGTTGTAAAAAAAATCGACAAGTACTATTGTGAAAAGTGCAAGATGTATCCAGAAAATACTAAACCTCGTGATCATACGACTACTGCAAATTGCACATTATTTGATGATGTGGCACAAAGAATGTTGAATACATCTATCTCAAGCTTGCTCAATTCACTGGATGGGAGATGTGAAGAAGTTCCTACAATTATACAACAATTATGTGGAAGGACATTTATATTTCAACTCAAGCTCAATATTGAAAATTTAACTCAAGGCAAGTCAAACTATATAGTAAGAAGAACATTTGTGCCTGATGATAAACTTGAAATGCAACACTTGGATGATAAAGCTAAGACGACACTGGAGAAGAAAACGACTCAGAAGAAGACCTAG
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| Protein seq | MKNSTNPRPKDIREIELLLLDGAKIRVTLWGQLAHSLNEDVIGNHTVVVVTSTTVQEFNGLSLRSSSATRLYTDINIPETWKIISRHSDEQNLPKLMEVDKSTQGTLEEQMFYNRKTLQQITNMGHDDTKTTIDHLQDVTWWYMSCNDCNKKVVKKIDKYYCEKCKMYPENTKPRDHTTTANCTLFDDVAQRMLNTSISSLLNSLDGRCEEVPTIIQQLCGRTFIFQLKLNIENLTQGKSNYIVRRTFVPDDKLEMQHLDDKAKTTLEKKTTQKKT |
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| Function | Replication protein A 70 kDa DNA-binding subunit B [UniProtKB/Swiss-Prot:Q10Q08] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_11g0014410 | OsAzu_11g0014410.01 | Chr11 | 17571886 | 17573512 | - | NAM | ||
| CDS seq | ATGAAGAACTCTACAAACCCACGGCCTAAAGATATCCGTGAGATTGAACTTCTATTATTAGATGGTGCTAAAATCAGAGTGACGTTATGGGGGCAGTTAGCTCATTCTTTGAATGAAGATGTGATTGGCAACCACACTGTTGTGGTTGTTACATCAACAACAGTTCAAGAATTTAATGGTCTGTCTTTGAGGTCAAGCAGTGCCACAAGATTATATACAGATATAAATATACCTGAGACCTGGAAAATTATTTCAAGGCACTCGGATGAACAAAATTTGCCAAAACTCATGGAGGTGGATAAAAGTACACAAGGTACATTGGAAGAACAAATGTTCTATAACAGGAAAACCTTGCAACAGATTACAAACATGGGACATGATGACACAAAAACTACGATTGATCATTTACAAGATGTCACATGGTGGTACATGTCATGCAATGATTGCAACAAAAAAGTTGTAAAAAAAATCGACAAGTACTATTGTGAAAAGTGCAAGATGTATCCAGAAAATACTAAACCTCGTGATCATACGACTACTGCAAATTGCACATTATTTGATGATGTGGCACAAAGAATGTTGAATACATCTATCTCAAGCTTGCTCAATTCACTGGATGGGAGATGTGAAGAAGTTCCTACAATTATACAACAATTATGTGGAAGGACATTTATATTTCAACTCAAGCTCAATATTGAAAATTTAACTCAAGGCAAGTCAAACTATATAGTAAGAAGAACATTTGTGCCTGATGATAAACTTGAAATGCAACACTTGGATGATAAAGCTAAGACGACACTGGAGAAGAAAACGACTCAGAAGAAGACCTAG
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| Protein seq | MKNSTNPRPKDIREIELLLLDGAKIRVTLWGQLAHSLNEDVIGNHTVVVVTSTTVQEFNGLSLRSSSATRLYTDINIPETWKIISRHSDEQNLPKLMEVDKSTQGTLEEQMFYNRKTLQQITNMGHDDTKTTIDHLQDVTWWYMSCNDCNKKVVKKIDKYYCEKCKMYPENTKPRDHTTTANCTLFDDVAQRMLNTSISSLLNSLDGRCEEVPTIIQQLCGRTFIFQLKLNIENLTQGKSNYIVRRTFVPDDKLEMQHLDDKAKTTLEKKTTQKKT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 3.455394 | 0.812338 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44840 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000430 | SBH | 0.097011 | 0.000000 | 1.741960 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000430 | SBH | 0.622973 | 1.750364 | 5.925358 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000430 | SBH | 0.087940 | 0.067654 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000410 | SBH | 3.328699 | 4.578051 | 6.117254 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018120 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0397000 | RBH | 0.2878415 | 0.861447 | 0.4012 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022130 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000410 | SBH | 0.097151 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000410 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000410 | SBH | 0.149886 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0013750 | RBH | 0.202399 | 3.900005 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013570 | RBH | 0.217361 | 0.000000 | 1.630732 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023510 | SBH | 0.0 | 0.000000 | 0.000000 |
