Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_08g0001820 | OGI:08003880 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr08:1575524-1579244 | ||||||||
| Gene Symbol | C3H54, OsC3H54 | ||||||||||
| DNA seq | AAATGACAAAAAATCGACCGACGTACTCCACTCCATCTCATCAAACCTCTCCGCCTTCTTCTCTCTCGCTCGCACGCACGCACGCAGGCAGTCGCGCGCCCCGTTTGAACTGGGCCAAGGCGACGACTAGGCTTCGATCGGCGAGCGAGCCCTCCGCTCGATCCCCCCGCATGCGATGCGATGCGATCGATGCGCGCGCGATACTATCCACCCGATCGAATCGCGCGCTCTCGATCGATCTCGAATTTTATTCCTCCTTTGTTGTTATAAAAGGAGGCCCAGGTTTGTTCTTCGTGTTCCTCCTGTTTCAATTCCATTCTTCCATTGCGGGCGTCTAGTGATCGATCGAGGTAGGCTAGGTTTAGGTTTCATGTCCACCAGTGGTGGTGGTGGGTGGCAATGGAGGTGCCGGAGTTAGTGAAGCTGGCGTTCGCGAGGGTGCAGAGGGTGGAGCCGGAGCATGTCGGCAAGATATTCGGCGTAATGCTGCTGAGGGAGCCCGACGAGGACGAGTTGGTGCAGCTCGCATATGGTCCCGAGGCCACGCTCCTCGCCAAGATCGAGGATACTAAAGCCGCGCTCACCGTCATCTATGCCCGCTGCTCCGCCGCCGCCGCGCACGGACCTCCCGGTGGCGGCGGCGTCGGCGTCGGCGGCGGCGGAGGCTATCACCAGCAGCCGCAGCAGCTCTTCTCCCGCCCCCCGGTACCTGCTTGCGGCGGCGTTCGCCATCACTACTCTCCCGCCGCCGCCGCCGCGGCTGCCTTTGGATACCAGGTCCAGTCGCCGCAGTACTGGCCGGACTCGCCGCCGGCGCCACCGACTAAGGCGGCGCAGCAGGAGTTCGCGCCTCCCGGGCTCGTCGTCGACGCCTCCGCGGAGGGCCCGTACCCGCTGCGCGGCGGCCAACACGTCCTCGACGACAACAACTTTGGCGGCGGGTACTACTACCCGGCCGGCGAGGACGCCTTCCCCAATGGCGGGGGTGGCGGCGGGGGGTCGCCGGCGAGGGCGCGGCGTTCGAACGGGCTGTCCACTCGACGTCCCTGCCACTACTTCTCCAAAGGCATCTGCAAGAACGGCCAGAACTGCCACTACTCGCACCACCAGGTGTACCAGGACGCGCTCGCCGGCGCCGCCATCAACGGCGACGTGTACAACCACCAGCCAGGCGGCGTGACGCCGGGCTCGCTCGAGACGCTGGAGATGGAGATCACCGAGCTGCTCAACTCGCGGCGCGGGCAGCCGGTGTCCATCGCCTCGCTGCCGACGCTCTACGGCGAGAAGTACGGCAAGGGACTCCAAGCCGACGGCTACCTCACCGAGAGCCAGCGCCATGGCAAGGCCGGATACAGCCTCACCAGGCTGCTCTCTCGCCTCAACAAGATACGGGTCATCGAAAGGTAATGCCAAAATAATCTTCCATTTCTTCTCTATCAATCTTGTTGATTGTTTCTTCTCAATTTGATTGATTGATTGATTTACTGTCTGACGAACAGGCCGCACGGGCAGCATTCGGTGGTTCTCGCGGAGGACGCTGCCAAGTACATGGATTTCAGAGGTGGCGGCGGCGGTGGTGGCGGCGACACGGGCTCAGTTCCGGCGAGCTCGCACCAGATATACCTCACCTTCCCAGCCGAGAGTACCTTCGCCGAGGACGACGTCGCCAACTACTTCGGGTCTGCAATTCGGCATGTATAAACCGCAACTTGTTTGCTTCTTTCCAAATCTTAAATGACATGGCCATTTTCGCTTGTTTGATTGCGTTTGACAGGCAGTACGGGCCGGTGCGCGACGTGAGGATCCCCTGCCAAGAGCGGCGCATGTTCGGGTTCGTCAGCTTCCAGAGCCCGGAGACGGTGAGCACCATCCTGATGCGGCGCAACCCGCATTTCATCTGCGGATCGCGGGTTCTCGTCAAGCCCTACAGGGAGAAATCCAAATGCGTCGACAGGTAACCATTACCCTTCTTGGTTCTTGCCAACAGATAGTTCAATTCACAGTAGAGTTTTCAAATTATTAAAAATGGTGTTTCCCATGGACTTGTTAGTACTTCTAGCTGTTACTACTTTTTTGTGTTTGTGACGAGCAAATTAAATTAATTAAAGTTTTTATAAATATTGCAATTTTCACGTGCAGGACGTGCGTGGACAACATCAAATCGATGGTTCCCTACTGTCCTCCACGCTTCTTTGAGTTTGATCAAGAGCTCTACACAGGTATAATAGCATTTGCATGCACACATCATCACAATGGGCACCGATTAATTCTCAACCTTCATCTTGCTTCAATTTTGTGCAACAGCAGAGTATGATGCTTCGAGGTTGATGAGGAAGCAGTTGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGGCGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGCAGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGGTCTGTGTGTTGTGTCATTCATTGGTCATTGCCAGAATTATACCTCTAGTTGTTCCATTTCTCCCTGGTTGAAGTTTGTTTAGTGGCTCAAGGATTATCTACTTGATTATAGTGATAAATTAAATAATTTAAGTAATGAACTTAATGATTAGGTTAATAAGTGCAGTAGAAGAACGGTGTTTCTTACCAAAACATATTTTTTGAAGCGTGGAGAAATGTTTTAATAGTATAGTGAATACTGAATAGTGCACGGCCAAATATCCTGATGGTTTTATGCGGCGTTTTTTTCCTGTGAACAGATTCGAAACAACTCGACCTTATGAATCCATCCCTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGGTACAAACATATTTGCAGCCAATTTCTTGCATATATGTTGCTACCTGACATTGAGCTAGTTCCTCTTTGTTCACTGGATTGCTTCATTTGATTTCTAACTGCAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATTATATAGGAGGAAAAAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCCTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAACAAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGAGGCACATCTTTTTTGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAATTATACTGTCCTAGAATAAGGCATGTTATTATTTACATATTTAGTGTTATCTTCTTTTTTTTAGGGTATAATGGCCTACTGGCCTTTACCTTTACAAGGGTGAAAAAAAAAAGCAGAACCTTTGCTGATATTCCTATTGACAAGATGAGCAGAGCGTGCCCATTTGTACTTATCATCAGTAATGGAGAAAATTGCCTTCGATGTTTATTTCCTGCTTTCTGT
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| CDS seq | ATGGAGGTGCCGGAGTTAGTGAAGCTGGCGTTCGCGAGGGTGCAGAGGGTGGAGCCGGAGCATGTCGGCAAGATATTCGGCGTAATGCTGCTGAGGGAGCCCGACGAGGACGAGTTGGTGCAGCTCGCATATGGTCCCGAGGCCACGCTCCTCGCCAAGATCGAGGATACTAAAGCCGCGCTCACCGTCATCTATGCCCGCTGCTCCGCCGCCGCCGCGCACGGACCTCCCGGTGGCGGCGGCGTCGGCGTCGGCGGCGGCGGAGGCTATCACCAGCAGCCGCAGCAGCTCTTCTCCCGCCCCCCGGTACCTGCTTGCGGCGGCGTTCGCCATCACTACTCTCCCGCCGCCGCCGCCGCGGCTGCCTTTGGATACCAGGTCCAGTCGCCGCAGTACTGGCCGGACTCGCCGCCGGCGCCACCGACTAAGGCGGCGCAGCAGGAGTTCGCGCCTCCCGGGCTCGTCGTCGACGCCTCCGCGGAGGGCCCGTACCCGCTGCGCGGCGGCCAACACGTCCTCGACGACAACAACTTTGGCGGCGGGTACTACTACCCGGCCGGCGAGGACGCCTTCCCCAATGGCGGGGGTGGCGGCGGGGGGTCGCCGGCGAGGGCGCGGCGTTCGAACGGGCTGTCCACTCGACGTCCCTGCCACTACTTCTCCAAAGGCATCTGCAAGAACGGCCAGAACTGCCACTACTCGCACCACCAGGTGTACCAGGACGCGCTCGCCGGCGCCGCCATCAACGGCGACGTGTACAACCACCAGCCAGGCGGCGTGACGCCGGGCTCGCTCGAGACGCTGGAGATGGAGATCACCGAGCTGCTCAACTCGCGGCGCGGGCAGCCGGTGTCCATCGCCTCGCTGCCGACGCTCTACGGCGAGAAGTACGGCAAGGGACTCCAAGCCGACGGCTACCTCACCGAGAGCCAGCGCCATGGCAAGGCCGGATACAGCCTCACCAGGCTGCTCTCTCGCCTCAACAAGATACGGGTCATCGAAAGGCCGCACGGGCAGCATTCGGTGGTTCTCGCGGAGGACGCTGCCAAGTACATGGATTTCAGAGGTGGCGGCGGCGGTGGTGGCGGCGACACGGGCTCAGTTCCGGCGAGCTCGCACCAGATATACCTCACCTTCCCAGCCGAGAGTACCTTCGCCGAGGACGACGTCGCCAACTACTTCGGGCAGTACGGGCCGGTGCGCGACGTGAGGATCCCCTGCCAAGAGCGGCGCATGTTCGGGTTCGTCAGCTTCCAGAGCCCGGAGACGGTGAGCACCATCCTGATGCGGCGCAACCCGCATTTCATCTGCGGATCGCGGGTTCTCGTCAAGCCCTACAGGGAGAAATCCAAATGCGTCGACAGGTTGATGAGGAAGCAGTTGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGGCGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGCAGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGATTCGAAACAACTCGACCTTATGAATCCATCCCTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATTATATAG
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| Protein seq | MEVPELVKLAFARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAALTVIYARCSAAAAHGPPGGGGVGVGGGGGYHQQPQQLFSRPPVPACGGVRHHYSPAAAAAAAFGYQVQSPQYWPDSPPAPPTKAAQQEFAPPGLVVDASAEGPYPLRGGQHVLDDNNFGGGYYYPAGEDAFPNGGGGGGGSPARARRSNGLSTRRPCHYFSKGICKNGQNCHYSHHQVYQDALAGAAINGDVYNHQPGGVTPGSLETLEMEITELLNSRRGQPVSIASLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRLLSRLNKIRVIERPHGQHSVVLAEDAAKYMDFRGGGGGGGGDTGSVPASSHQIYLTFPAESTFAEDDVANYFGQYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDRLMRKQLAEKREMLLEMERRRATVRRLESMPPQFAYFDCSIEDASPLHSLQDDSKQLDLMNPSLASPDPLEIVSNSQAPPTQAGNIYDDHESNQIELLPESPFAASAPAGNSISTII |
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| Function | Zinc finger CCCH domain-containing protein 54 [UniProtKB/Swiss-Prot:Q6ZK57] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_08g0001820 | OsAzu_08g0001820.03 | Chr08 | 1575572 | 1579244 | + | NAM | ||
| CDS seq | ATGGAGGTGCCGGAGTTAGTGAAGCTGGCGTTCGCGAGGGTGCAGAGGGTGGAGCCGGAGCATGTCGGCAAGATATTCGGCGTAATGCTGCTGAGGGAGCCCGACGAGGACGAGTTGGTGCAGCTCGCATATGGTCCCGAGGCCACGCTCCTCGCCAAGATCGAGGATACTAAAGCCGCGCTCACCGTCATCTATGCCCGCTGCTCCGCCGCCGCCGCGCACGGACCTCCCGGTGGCGGCGGCGTCGGCGTCGGCGGCGGCGGAGGCTATCACCAGCAGCCGCAGCAGCTCTTCTCCCGCCCCCCGGTACCTGCTTGCGGCGGCGTTCGCCATCACTACTCTCCCGCCGCCGCCGCCGCGGCTGCCTTTGGATACCAGGTCCAGTCGCCGCAGTACTGGCCGGACTCGCCGCCGGCGCCACCGACTAAGGCGGCGCAGCAGGAGTTCGCGCCTCCCGGGCTCGTCGTCGACGCCTCCGCGGAGGGCCCGTACCCGCTGCGCGGCGGCCAACACGTCCTCGACGACAACAACTTTGGCGGCGGGTACTACTACCCGGCCGGCGAGGACGCCTTCCCCAATGGCGGGGGTGGCGGCGGGGGGTCGCCGGCGAGGGCGCGGCGTTCGAACGGGCTGTCCACTCGACGTCCCTGCCACTACTTCTCCAAAGGCATCTGCAAGAACGGCCAGAACTGCCACTACTCGCACCACCAGGTGTACCAGGACGCGCTCGCCGGCGCCGCCATCAACGGCGACGTGTACAACCACCAGCCAGGCGGCGTGACGCCGGGCTCGCTCGAGACGCTGGAGATGGAGATCACCGAGCTGCTCAACTCGCGGCGCGGGCAGCCGGTGTCCATCGCCTCGCTGCCGACGCTCTACGGCGAGAAGTACGGCAAGGGACTCCAAGCCGACGGCTACCTCACCGAGAGCCAGCGCCATGGCAAGGCCGGATACAGCCTCACCAGGCTGCTCTCTCGCCTCAACAAGATACGGGTCATCGAAAGGCCGCACGGGCAGCATTCGGTGGTTCTCGCGGAGGACGCTGCCAAGTACATGGATTTCAGAGGTGGCGGCGGCGGTGGTGGCGGCGACACGGGCTCAGTTCCGGCGAGCTCGCACCAGATATACCTCACCTTCCCAGCCGAGAGTACCTTCGCCGAGGACGACGTCGCCAACTACTTCGGGCAGTACGGGCCGGTGCGCGACGTGAGGATCCCCTGCCAAGAGCGGCGCATGTTCGGGTTCGTCAGCTTCCAGAGCCCGGAGACGGTGAGCACCATCCTGATGCGGCGCAACCCGCATTTCATCTGCGGATCGCGGGTTCTCGTCAAGCCCTACAGGGAGAAATCCAAATGCGTCGACAGGTTGATGAGGAAGCAGTTGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGGCGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGCAGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGATTCGAAACAACTCGACCTTATGAATCCATCCCTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATTATATAG
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| Protein seq | MEVPELVKLAFARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAALTVIYARCSAAAAHGPPGGGGVGVGGGGGYHQQPQQLFSRPPVPACGGVRHHYSPAAAAAAAFGYQVQSPQYWPDSPPAPPTKAAQQEFAPPGLVVDASAEGPYPLRGGQHVLDDNNFGGGYYYPAGEDAFPNGGGGGGGSPARARRSNGLSTRRPCHYFSKGICKNGQNCHYSHHQVYQDALAGAAINGDVYNHQPGGVTPGSLETLEMEITELLNSRRGQPVSIASLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRLLSRLNKIRVIERPHGQHSVVLAEDAAKYMDFRGGGGGGGGDTGSVPASSHQIYLTFPAESTFAEDDVANYFGQYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDRLMRKQLAEKREMLLEMERRRATVRRLESMPPQFAYFDCSIEDASPLHSLQDDSKQLDLMNPSLASPDPLEIVSNSQAPPTQAGNIYDDHESNQIELLPESPFAASAPAGNSISTII
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_08g0001820 | OsAzu_08g0001820.01 | Chr08 | 1575524 | 1579224 | + | NAM | ||
| CDS seq | ATGGAGGTGCCGGAGTTAGTGAAGCTGGCGTTCGCGAGGGTGCAGAGGGTGGAGCCGGAGCATGTCGGCAAGATATTCGGCGTAATGCTGCTGAGGGAGCCCGACGAGGACGAGTTGGTGCAGCTCGCATATGGTCCCGAGGCCACGCTCCTCGCCAAGATCGAGGATACTAAAGCCGCGCTCACCGTCATCTATGCCCGCTGCTCCGCCGCCGCCGCGCACGGACCTCCCGGTGGCGGCGGCGTCGGCGTCGGCGGCGGCGGAGGCTATCACCAGCAGCCGCAGCAGCTCTTCTCCCGCCCCCCGGTACCTGCTTGCGGCGGCGTTCGCCATCACTACTCTCCCGCCGCCGCCGCCGCGGCTGCCTTTGGATACCAGGTCCAGTCGCCGCAGTACTGGCCGGACTCGCCGCCGGCGCCACCGACTAAGGCGGCGCAGCAGGAGTTCGCGCCTCCCGGGCTCGTCGTCGACGCCTCCGCGGAGGGCCCGTACCCGCTGCGCGGCGGCCAACACGTCCTCGACGACAACAACTTTGGCGGCGGGTACTACTACCCGGCCGGCGAGGACGCCTTCCCCAATGGCGGGGGTGGCGGCGGGGGGTCGCCGGCGAGGGCGCGGCGTTCGAACGGGCTGTCCACTCGACGTCCCTGCCACTACTTCTCCAAAGGCATCTGCAAGAACGGCCAGAACTGCCACTACTCGCACCACCAGGTGTACCAGGACGCGCTCGCCGGCGCCGCCATCAACGGCGACGTGTACAACCACCAGCCAGGCGGCGTGACGCCGGGCTCGCTCGAGACGCTGGAGATGGAGATCACCGAGCTGCTCAACTCGCGGCGCGGGCAGCCGGTGTCCATCGCCTCGCTGCCGACGCTCTACGGCGAGAAGTACGGCAAGGGACTCCAAGCCGACGGCTACCTCACCGAGAGCCAGCGCCATGGCAAGGCCGGATACAGCCTCACCAGGCTGCTCTCTCGCCTCAACAAGATACGGGTCATCGAAAGGCCGCACGGGCAGCATTCGGTGGTTCTCGCGGAGGACGCTGCCAAGTACATGGATTTCAGAGGTGGCGGCGGCGGTGGTGGCGGCGACACGGGCTCAGTTCCGGCGAGCTCGCACCAGATATACCTCACCTTCCCAGCCGAGAGTACCTTCGCCGAGGACGACGTCGCCAACTACTTCGGGCAGTACGGGCCGGTGCGCGACGTGAGGATCCCCTGCCAAGAGCGGCGCATGTTCGGGTTCGTCAGCTTCCAGAGCCCGGAGACGGTGAGCACCATCCTGATGCGGCGCAACCCGCATTTCATCTGCGGATCGCGGGTTCTCGTCAAGCCCTACAGGGAGAAATCCAAATGCGTCGACAGGTTGATGAGGAAGCAGTTGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGGCGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGCAGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGATTCGAAACAACTCGACCTTATGAATCCATCCCTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATTATATAG
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| Protein seq | MEVPELVKLAFARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAALTVIYARCSAAAAHGPPGGGGVGVGGGGGYHQQPQQLFSRPPVPACGGVRHHYSPAAAAAAAFGYQVQSPQYWPDSPPAPPTKAAQQEFAPPGLVVDASAEGPYPLRGGQHVLDDNNFGGGYYYPAGEDAFPNGGGGGGGSPARARRSNGLSTRRPCHYFSKGICKNGQNCHYSHHQVYQDALAGAAINGDVYNHQPGGVTPGSLETLEMEITELLNSRRGQPVSIASLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRLLSRLNKIRVIERPHGQHSVVLAEDAAKYMDFRGGGGGGGGDTGSVPASSHQIYLTFPAESTFAEDDVANYFGQYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDRLMRKQLAEKREMLLEMERRRATVRRLESMPPQFAYFDCSIEDASPLHSLQDDSKQLDLMNPSLASPDPLEIVSNSQAPPTQAGNIYDDHESNQIELLPESPFAASAPAGNSISTII
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_08g0001820 | OsAzu_08g0001820.02 | Chr08 | 1575548 | 1579224 | + | NAM | ||
| CDS seq | ATGGAGGTGCCGGAGTTAGTGAAGCTGGCGTTCGCGAGGGTGCAGAGGGTGGAGCCGGAGCATGTCGGCAAGATATTCGGCGTAATGCTGCTGAGGGAGCCCGACGAGGACGAGTTGGTGCAGCTCGCATATGGTCCCGAGGCCACGCTCCTCGCCAAGATCGAGGATACTAAAGCCGCGCTCACCGTCATCTATGCCCGCTGCTCCGCCGCCGCCGCGCACGGACCTCCCGGTGGCGGCGGCGTCGGCGTCGGCGGCGGCGGAGGCTATCACCAGCAGCCGCAGCAGCTCTTCTCCCGCCCCCCGGTACCTGCTTGCGGCGGCGTTCGCCATCACTACTCTCCCGCCGCCGCCGCCGCGGCTGCCTTTGGATACCAGGTCCAGTCGCCGCAGTACTGGCCGGACTCGCCGCCGGCGCCACCGACTAAGGCGGCGCAGCAGGAGTTCGCGCCTCCCGGGCTCGTCGTCGACGCCTCCGCGGAGGGCCCGTACCCGCTGCGCGGCGGCCAACACGTCCTCGACGACAACAACTTTGGCGGCGGGTACTACTACCCGGCCGGCGAGGACGCCTTCCCCAATGGCGGGGGTGGCGGCGGGGGGTCGCCGGCGAGGGCGCGGCGTTCGAACGGGCTGTCCACTCGACGTCCCTGCCACTACTTCTCCAAAGGCATCTGCAAGAACGGCCAGAACTGCCACTACTCGCACCACCAGGTGTACCAGGACGCGCTCGCCGGCGCCGCCATCAACGGCGACGTGTACAACCACCAGCCAGGCGGCGTGACGCCGGGCTCGCTCGAGACGCTGGAGATGGAGATCACCGAGCTGCTCAACTCGCGGCGCGGGCAGCCGGTGTCCATCGCCTCGCTGCCGACGCTCTACGGCGAGAAGTACGGCAAGGGACTCCAAGCCGACGGCTACCTCACCGAGAGCCAGCGCCATGGCAAGGCCGGATACAGCCTCACCAGGCTGCTCTCTCGCCTCAACAAGATACGGGTCATCGAAAGGCCGCACGGGCAGCATTCGGTGGTTCTCGCGGAGGACGCTGCCAAGTACATGGATTTCAGAGGTGGCGGCGGCGGTGGTGGCGGCGACACGGGCTCAGTTCCGGCGAGCTCGCACCAGATATACCTCACCTTCCCAGCCGAGAGTACCTTCGCCGAGGACGACGTCGCCAACTACTTCGGGCAGTACGGGCCGGTGCGCGACGTGAGGATCCCCTGCCAAGAGCGGCGCATGTTCGGGTTCGTCAGCTTCCAGAGCCCGGAGACGGTGAGCACCATCCTGATGCGGCGCAACCCGCATTTCATCTGCGGATCGCGGGTTCTCGTCAAGCCCTACAGGGAGAAATCCAAATGCGTCGACAGGTTGATGAGGAAGCAGTTGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGGCGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGCAGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGATTCGAAACAACTCGACCTTATGAATCCATCCCTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATTATATAG
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| Protein seq | MEVPELVKLAFARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAALTVIYARCSAAAAHGPPGGGGVGVGGGGGYHQQPQQLFSRPPVPACGGVRHHYSPAAAAAAAFGYQVQSPQYWPDSPPAPPTKAAQQEFAPPGLVVDASAEGPYPLRGGQHVLDDNNFGGGYYYPAGEDAFPNGGGGGGGSPARARRSNGLSTRRPCHYFSKGICKNGQNCHYSHHQVYQDALAGAAINGDVYNHQPGGVTPGSLETLEMEITELLNSRRGQPVSIASLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRLLSRLNKIRVIERPHGQHSVVLAEDAAKYMDFRGGGGGGGGDTGSVPASSHQIYLTFPAESTFAEDDVANYFGQYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDRLMRKQLAEKREMLLEMERRRATVRRLESMPPQFAYFDCSIEDASPLHSLQDDSKQLDLMNPSLASPDPLEIVSNSQAPPTQAGNIYDDHESNQIELLPESPFAASAPAGNSISTII
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_08g0001820 | OsAzu_08g0001820.04 | Chr08 | 1575547 | 1579244 | + | IsoSeq | ||
| CDS seq | TACTCCACTCCATCTCATCAAACCTCTCCGCCTTCTTCTCTCTCGCTCGCACGCACGCACGCAGGCAGTCGCGCGCCCCGTTTGAACTGGGCCAAGGCGACGACTAGGCTTCGATCGGCGAGCGAGCCCTCCGCTCGATCCCCCCGCATGCGATGCGATGCGATCGATGCGCGCGCGATACTATCCACCCGATCGAATCGCGCGCTCTCGATCGATCTCGAATTTTATTCCTCCTTTGTTGTTATAAAAGGAGGCCCAGGTTTAGGTTTCATGTCCACCAGGTGTACCAGGACGCGCTCGCCGGCGCCGCCATCAACGGCGACGTGTACAACCACCAGCCAGGCG
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| Protein seq | YSTPSHQTSPPSSLSLARTHAGSRAPRLNWAKATTRLRSASEPSARSPRMRCDAIDARAILSTRSNRALSIDLEFYSSFVVIKGGPGLGFMSTRCTRTRSPAPPSTATCTTTSQA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr08 | 1575805 | 1575883 | + | OsAzu_08g0001820.01 | OsAzu_08g0001820.04,OsAzu_08g0001820.03,OsAzu_08g0001820.01 | All |
| RI | Chr08 | 1575883 | 1576926 | + | OsAzu_08g0001820.03 | OsAzu_08g0001820.04,OsAzu_08g0001820.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.155721 | 0.963683 | 6.952759 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0126700 | RBH | 2.112302 | 1.550933 | 1.238468 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g03310 | RBH | 1.539100 | 0.933668 | 0.269485 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0126700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0001830 | RBH | 0.855074 | 0.000000 | 2.659986 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0001860 | RBH | 11.075414 | 0.0 | 4.109533 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0001820 | RBH | 3.122030 | 0.021272 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0001680 | RBH | 28.205166 | 0.0 | 24.346884 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0022500 | RBH | 41.4711515 | 2.133016 | 0.329797 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0001570 | RBH | 8.685742 | 0.000000 | 0.672687 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0024200 | RBH | 28.2027335 | 1.153771 | 1.326367 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0001760 | RBH | 0.349986 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0001740 | RBH | 1.160684 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0001660 | RBH | 51.428249 | 3.087374 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0001750 | RBH | 10.798762 | 0.0 | 2.120465 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0001680 | RBH | 4.516765 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G001790 | RBH | 6.831315 | 0.0 | 1.666963 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0001660 | RBH | 26.865145 | 1.385086 | 8.038581 |
