Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_07g0010340 | OGI:07030360 | 15/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr07:10506242-10508386 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTTAAAGGGATATTTGGAATTAGTCCGGAAGATCAAATTGGCAAGGTCAGCTTTCCTCCTGTGCAGGCTGCTCAATCATTCTCATCATCGTTTCCACATCTCTTTCATGACAATGATGACCATCTGCCGTGCCTTATCCCATGTGCTATAGACCAGGTATGATATCTCTGGTCTGATTATCTCGACAGTACAACATAATTGCTTTTGTATCTACTTGCTAGTATACTGATAATATATAGATTTTTCAGCACAAAATTTGGACTTAGTTTGTTTCTTCTTGTTCTTTTCCATCTCTAAATTTGAATTTGACCCACTCCCATACGCAAAAGCCAAGTTTAGAGCCTTGACTTGTAAACATTTGCATTTAAAGATACCAAAATGTTCTACATGTTTGTATATAGCCGTATCATCCATGCATCGAATATGACTGTCAACATTCGGAAATATCAATCATTAATGTTGGAAATAACCCAACTAGCGTTATACCACATGTAATAAACCAGTAAAAAGAACTTCCACGCAAGGTGGTGTCTGAGAAAGGGAATTTCTAGGCAGCCTGCCCTTATCTGACATAATTGGTTGTATATCTTCTTATTGGCATTAAAATATGTAGAGAGATTTATCTGGCAGCTCTAAATTTGTACTGAGTGCTTGTCAAGTAAATATTTTTCCAATACTTGATTTAGTGATCTACTATCATGAAAGCATATCCGATATTTCTCATTAAAGGTACTGGAGTGTTGGTACATATATGTATTTAGTTTGGCATATTTTGAGTTGCCTATTTAATCTTAATTTATATTTATGCAGGATCCTTATTTTAGGATGACTTGTGATGTTGCTCCCAAACTTGGTTTTCAGAAACCTTCACTGATTGAGTCAAGATTTTTCCCTGCACTTCAGGTATTTCTTTTAGGGAGAGCTTGGATGTAGGACTGAACATTAGAGCTGGTGCAATTTGACGACTTGTAATTAACTTGCTCAGAATTTTTTTTGGTTTTACTTCGAATAATCATAATTTCACGTGCATTACTTTATGTCGATTGCTTGATTTCCTTTTAACAGGGGGAGAGCACTAAAATGTCGGCCAGTGACCCAAACTCTGCAATATATGTGACAGATAATTCTAAACAAATAAAGGCAAAGGTTTCATCTGGAATATTTACTCAATCACACGCTTTAGTTCGGCCATTTAAATTATGGTATCTTGTAGTTCTATTATTTCATAGGCTTATAAAAGCTATTTCCATTATTTTCCAGGTAAATAAATATGCTTTCTCAGGTGGCCAGGACACCGTGGAGCTCCATAGGGAACTTGGTGCTAATCTTGATGTAAGCTCTTTCCCAAGTATTGACCACTACTGAACACCAAACTACTATGCTAGAATTATGCACTGTATTCTGAGTTTTGCTTAGAAAACAGAAGTTAGATTTAAGAATCAACACGATACTCGAATTTGAATGATCAGCAGAAGCTACCAATTCTAATGCATGTAGTTAGAAGCCCTTTGTGTTTCTTGAAGAAGCCTTCTATGTCCACATTTCAGTGCTAATATGCTGAATATTGTGATCTTCATTTCTATAATCTGCCTGTAATATTCCAGTTAATTCCTGTATTTCTAAAGAAACACCAAAGTGATCTGTGAATTCTTGTGTTGTTCAGGTGGATGTCTCAATCAAGTACCTAAACTTCTTCCTACAAGACGATGATGAGCTTGAGCACATAAAGAAGGTGCATTTCTTATTGTGGAAAACTAAGTTGCACTACCATTATATATGAAACTCATTATCCATTATAAAATTTATTTCCCAATACCAGGAGTACAAGGCAGGAAGGATGTTAACTGGCGAAGTGAAGCAACGACTCATCGAAGTTCTATCTGAGCTGGTTGCTAGACATCAGAGGGCTAGAGCTCAAGTGACTGAGGAGGTAATGAAAATAATTCATGTTTTGTTTGATCTTGTCATGCTTTACAATTGGGTTGGTTGCAAGTTCTAATTCTTGTTTCTATTGTACACACACATACATCCGTATGCAAAGATTATAACCAAGTATTCTGAACGGGACACATACAAATTTCCTTGTTTGTGTAGATGGTTGATGCTTTCATGGCAATAAGGCCTCTTCCCAACATGTTTGGCTGA
More
|
||||||||||
| CDS seq | ATGACTTGTGATGTTGCTCCCAAACTTGGTTTTCAGAAACCTTCACTGATTGAGTCAAGATTTTTCCCTGCACTTCAGGGGGAGAGCACTAAAATGTCGGCCAGTGACCCAAACTCTGCAATATATGTGACAGATAATTCTAAACAAATAAAGGCAAAGGTAAATAAATATGCTTTCTCAGGTGGCCAGGACACCGTGGAGCTCCATAGGGAACTTGGTGCTAATCTTGATGTGGATGTCTCAATCAAGTACCTAAACTTCTTCCTACAAGACGATGATGAGCTTGAGCACATAAAGAAGGAGTACAAGGCAGGAAGGATGTTAACTGGCGAAGTGAAGCAACGACTCATCGAAGTTCTATCTGAGCTGGTTGCTAGACATCAGAGGGCTAGAGCTCAAGTGACTGAGGAGATGGTTGATGCTTTCATGGCAATAAGGCCTCTTCCCAACATGTTTGGCTGA
More
|
||||||||||
| Protein seq | MTCDVAPKLGFQKPSLIESRFFPALQGESTKMSASDPNSAIYVTDNSKQIKAKVNKYAFSGGQDTVELHRELGANLDVDVSIKYLNFFLQDDDELEHIKKEYKAGRMLTGEVKQRLIEVLSELVARHQRARAQVTEEMVDAFMAIRPLPNMFG |
||||||||||
| Function | Tryptophan--tRNA ligase, cytoplasmic [UniProtKB/Swiss-Prot:Q9SR15] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_07g0010340 | OsAzu_07g0010340.01 | Chr07 | 10506242 | 10508386 | + | NAM | ||
| CDS seq | ATGACTTGTGATGTTGCTCCCAAACTTGGTTTTCAGAAACCTTCACTGATTGAGTCAAGATTTTTCCCTGCACTTCAGGGGGAGAGCACTAAAATGTCGGCCAGTGACCCAAACTCTGCAATATATGTGACAGATAATTCTAAACAAATAAAGGCAAAGGTAAATAAATATGCTTTCTCAGGTGGCCAGGACACCGTGGAGCTCCATAGGGAACTTGGTGCTAATCTTGATGTGGATGTCTCAATCAAGTACCTAAACTTCTTCCTACAAGACGATGATGAGCTTGAGCACATAAAGAAGGAGTACAAGGCAGGAAGGATGTTAACTGGCGAAGTGAAGCAACGACTCATCGAAGTTCTATCTGAGCTGGTTGCTAGACATCAGAGGGCTAGAGCTCAAGTGACTGAGGAGATGGTTGATGCTTTCATGGCAATAAGGCCTCTTCCCAACATGTTTGGCTGA
More
|
|||||||
| Protein seq | MTCDVAPKLGFQKPSLIESRFFPALQGESTKMSASDPNSAIYVTDNSKQIKAKVNKYAFSGGQDTVELHRELGANLDVDVSIKYLNFFLQDDDELEHIKKEYKAGRMLTGEVKQRLIEVLSELVARHQRARAQVTEEMVDAFMAIRPLPNMFG |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0540900 | SBH | 3.855896 | 3.179824 | 10.501923 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g17770 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0540900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016220 | RBH | 1.156314 | 17.413649 | 6.164752 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0010360 | RBH | 0.0 | 0.0 | 0.175551 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0010300 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016020 | SBH | 0.294752 | 1.279942 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0010290 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0185300 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0010740 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0182700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0010210 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0010270 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0010210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0010430 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0010290 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G010260 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0010050 | RBH | 0.0 | 0.000000 | 0.0 |
