Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0540900 | OGI:12056440 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:21625455-21629669 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAGACGACAAAGCTGTTTGTTTCTTGATTGTTCTGATTAAGCTCAAAACTGTTGTAACATTTCTGATTCAATACAAAAAGACGTTGGTTCTATATTGATGGAGCAGGCTTTAAGATAAATAAATTTATCCTCAACTGATTTGCAAAATCAAGCGTGCCACCAAATATTACGAGTGGCCAGCCTACAAATATAAGTCATGAAACACACGAATGCTGCTTCCAAATTCTAGAGATCACTTCGGACATCTTATCCAGCTAGTAGCAAATATCTCCAGGCAGTTTTTGACATCAGACTCAGCCAAACATATTGGGAAGAGGTCTCGCCGCCATAAATACATCGACCATCTGCACAAACATGAAATCAATTAAATTATGCAAGAAATTTATATTGCTGGCAATGCTACATGTTTTAAGAATTTCATTAAGCGCATATTCCAGTGTTATCTGTATCACGGCATTTCTTTGATATGCTTGGGTGCATCTGTGCGTACGGAAAAATGTACTTCAAAATATAAAGAAGTGCGCAAGATTGCATAGAGTTGTGTACCTCCTCGGTCACTAGTGCTCTAGCTCTTTGATGTCTCGCAACCAGTTCGGATAGAACTGCAACAAGGCGCTGCTTCACTTCACCCGTCAGCATCCTTCCTTCCTTGTACTCCTGATGAGTTTCAGAAATGTTAGCGGAAATCAGTTGAAGAAAACATGTTAAAGAAACACATCAGGCAAATTAGCTCTACGCCTCTACATATATAGCATAATTTGTATTACCTTCTTTATGTGCTCGAGCTCATTGTCATCTTCAAGGAAGAAGTTCAGGTACTTGATTGGAACATCCACCTGAACATCACAATCACAACTGACATTGATTTAAGGAGAAAAATAAAATACTTTTTTCTGAATCTAAAAATACAAATACAGAACTTGAGCATTGCACATGCGTTAAAGTAATGAAAGTGCCTAAAAAGGTAAAATTTTTGCATGTGTTAGTGTTTGGGGGAAAAATATTGATGGCTTCAATAAATGACAAAAGTACAAACGAAAAGGAAAGGTCCTGAATGTATGAACTGTGAATTAGCATTCTTCCTATATTCAAATTATTTTTCTTTAATTTACATGTTGCATTTCAAACAAATATATGTCAACAGTGCATAACTCAGGTAATCGGGGGAAAGCATACTTTACTAAGTACACACGTTTCACAATTAACAATAAGTTCAATATAACAAGAAAATGACTTACATCAAGGTTAGCTCCAAGTTTTCTATGGAGCTCAATTGAGTCCCGGCCACCTGAGAACGCATATTTGTTCACCTGGAAAAAATGGTAAAATAAATGACAGGCCCATGAAAAGCAGAACCATAAGGCTACAGGACGCTTGACTTAATTGAAGACCAAAATTTGAATGGCCTCAGGTAAAATATAAAATTGCAGTAGTTTTCCACTAAAATACAATGCTTAAAGCAAACCTTTGTCTTTATTTCTTTAGCACTATCTGTCACATATATTGCAGAATTTGGATCACTGGCCGACATTTTTGTGTTCTCCCCCTGTAAATGGAAATAAGCAGCTCACATAAATCAATGTCCCAAATATTATGCTATCTAAAATAGGAAATAAGAAAAATAAATGCTGAGCAATGGACATGAGCGATGAACTTGGCGAATGAAGATGCAATCTTATCAGACATAGATAAATGCAATATAAGAAAATAGCAAGTTACTAATTAACCAGGAGCTGTCAAACAGCACAGGAAAATTAAGTGGAATTTCACTTAAAAAATCGTGATTAATTGCGATTGCCTTTTTTTTAACTTTACTAGTAATAATGATTCTAGTGACAAAACTTGCAAGAAAAATAGATAACCCGTCCTTTCAACTGAAATTTCGTATGTAAACAATCGCTTTGCTATCATTGAAGGACTAACTTCAGATTGAGGTACTGAGCATGAGCTCTGTATTATGCCTCCATTGTTGAATTCCTTTTCTATGCTCATTTTACACTTCTATACAGTGAAGATATTAAGCTATAAACCCATGGTCCTAAAAAAACGTACCTGAAGAGCAGGGAAAAATCTCGATTCAATTAATGATGGTTTCTGGTAACCAATTCTTGGAGCAACGTCCCGGGTCATCCTGAAATAAGGATCCTGGAAGAACAAATCCAATGAGCAACTCAAATCCAATGAGCAACTCAAACTTGCATAACAGAACATGAACATCTACAATAGCTACCTAAAATTAAAGAAATTACAAGAATAAATGTATCATGGTCTGATTGATGTGTTCCTAGACGAAATGGCATGATAGCAGCATGGAAAGGCAGCCAAACCACAAATTCACAGGGAGAAATGGAATCAGGGAGCCCAGATATGTTTATACCTGGTCTATTGCACATGGGATTAAGCACCGTAGTTGGTCATTCCCAGAGAAGAGATGTGGAAATGAAGAAGGGAATGATGGAACCGCTTGCACAGGAGGAAAGCTGACTTTTCCTATATGATCCTCTGGGGTGAATCCAAATATTCCAACAACCTGTCGTTCAAGAGTAAACAATATCAGCAAAAGACAATGGTTGGATGCAAACAAGCAAGTAACCAAGCGATCCACTGCCCAAAATATTGCTAGACTAACTTAAACTGCTCACCTTATTATATGTCACACATCTGGCAACTTTAACCATGTTTTCATAAAAAGCACTGTAAGAAAATGACAGAGGATTACTTTTCTATAGAATAAATAAATCTCAAGAATTACTTGCTTAGCAGAAGAACAGTCATTAAATTAGTCATAAATGAAAGATAAATCAAGACTACAGTTAAGAAGAACCTTACCCTCCAACATAATTAAAATCAGAGAAAATGAAAGTCCTTTCGACATCAAATCCACAAGCAATGATATCTTTTGCATTTTCACGGGCAAGCCTTTTAGTTTCCTCAACAGTCAAATTCTTCCATAAGAACTTCTCATCATCAGTTAGCTGTATTACTAGGGGCACCTTGAAAGCATCCTGCAGATATCTGAAAAGGGATACTGACAGTTAATCGACGTTGTCCAAGCATTCTCACAATTATAAATTAGAATTAAGCCAACAATGTAAAGGTTCATCAAACAAGATATTGCAACAAAGTTTGGAAGCTACATTCAGACTAGAAAGCATAGGAAACATTACACAAAGCAGCATATCTATGTTATATTGTTTCCGTGCAAGATGTAAAAGCATGTCTTGTTTTAAAAAAATGTTTAAATACCGAATTTTCTTTCATGCAAGGAACATGGTAAGATGAAATGTTCCGGGGTAACATTCATCACACCCGACCTTTCAACTGGTCCGGTAATCTATTGCATCGCTCTGCTGATTCACCACATAAACTACAATAAGCATATGAAAGGTTCTACCAACACTGAAAATAGGTAAAGTTCACTAGGTCATCCCAGCAAATAACACATAAAAGGTTTGTGCACATCACCAACAAACGCATTATCCAAGATTCGGCTGCTCTAGCCAAACATACAACTACTCCCTCTCAATACTGCCGCGGCATTGCCCAGTTATTTATACAACAACACGAGTGAATCAAGAACATTGCAGGGGACAGCGAGTATTGCAGATTGGAACAATCGCGCTTACTTGGTGAACATGAAGGGGATGAGATGGCCGAGGTGCAGCGCCTCCGACGAGGGCCCCCTCCCCGTGTAGAGGTAGAACTTCTCCCCCTTCTCGTACAAATCCAGTATCTCGTTCAAATCCCTGCACACACACACAGAGTGAGGGCGAGCAAGCAAACCAAAATCCAGTACTTAGAATCGGGAAACAAGCATTAAGCTAGGGTTTGGAGGGCGGCGGCGGGCGCACGCACCGGTGGGCGAAGAAGAGGCCGCGGCGGAGGAAGCGGTGAGGGGGGCGGGCGGTGAGGCGGGCGACGCGGGCGACGAGCGCGTCGTCGAGGCGCTGGCAGCCGAACTGGTCGACGAGCTTGTCGTAGTCGATCCCGCCTTTCCCCGCCGACACCTCCCACGGGTTCACCACCTGCTCCTCCTCCTCCCCCTCCTCGTTCGTGGCATCCACCTCGGTCACGGCCTCCGCTGCCGCTGCCATGGCGGGATCTCACGCCTCCGGTCGCCGGGGACGCTGCGGCGGCGGCGGCGGCGGCGAGGAGGAGGGGATTGGAGAGGGTGGGAGATAAACCTCGTGCTCTGGCTGACGTGTGGGGCCCGCT
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| CDS seq | ATGGCAGCGGCAGCGGAGGCCGTGACCGAGGTGGATGCCACGAACGAGGAGGGGGAGGAGGAGGAGCAGGTGGTGAACCCGTGGGAGGTGTCGGCGGGGAAAGGCGGGATCGACTACGACAAGCTCGTCGACCAGTTCGGCTGCCAGCGCCTCGACGACGCGCTCGTCGCCCGCGTCGCCCGCCTCACCGCCCGCCCCCCTCACCGCTTCCTCCGCCGCGGCCTCTTCTTCGCCCACCGGGATTTGAACGAGATACTGGATTTGTACGAGAAGGGGGAGAAGTTCTACCTCTACACGGGGAGGGGGCCCTCGTCGGAGGCGCTGCACCTCGGCCATCTCATCCCCTTCATGTTCACCAAATATCTGCAGGATGCTTTCAAGGTGCCCCTAGTAATACAGCTAACTGATGATGAGAAGTTCTTATGGAAGAATTTGACTGTTGAGGAAACTAAAAGGCTTGCCCGTGAAAATGCAAAAGATATCATTGCTTGTGGATTTGATGTCGAAAGGACTTTCATTTTCTCTGATTTTAATTATGTTGGAGGTGCTTTTTATGAAAACATGGTTAAAGTTGCCAGATGTGTGACATATAATAAGGTTGTTGGAATATTTGGATTCACCCCAGAGGATCATATAGGAAAAGTCAGCTTTCCTCCTGTGCAAGCGGTTCCATCATTCCCTTCTTCATTTCCACATCTCTTCTCTGGGAATGACCAACTACGGTGCTTAATCCCATGTGCAATAGACCAGGATCCTTATTTCAGGATGACCCGGGACGTTGCTCCAAGAATTGGTTACCAGAAACCATCATTAATTGAATCGAGATTTTTCCCTGCTCTTCAGGGGGAGAACACAAAAATGTCGGCCAGTGATCCAAATTCTGCAATATATGTGACAGATAGTGCTAAAGAAATAAAGACAAAGGTGAACAAATATGCGTTCTCAGGTGGCCGGGACTCAATTGAGCTCCATAGAAAACTTGGAGCTAACCTTGATGTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAGGAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTTGCAGTTCTATCCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
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| Protein seq | MAAAAEAVTEVDATNEEGEEEEQVVNPWEVSAGKGGIDYDKLVDQFGCQRLDDALVARVARLTARPPHRFLRRGLFFAHRDLNEILDLYEKGEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLTVEETKRLARENAKDIIACGFDVERTFIFSDFNYVGGAFYENMVKVARCVTYNKVVGIFGFTPEDHIGKVSFPPVQAVPSFPSSFPHLFSGNDQLRCLIPCAIDQDPYFRMTRDVAPRIGYQKPSLIESRFFPALQGENTKMSASDPNSAIYVTDSAKEIKTKVNKYAFSGGRDSIELHRKLGANLDVDVPIKYLNFFLEDDNELEHIKKEYKEGRMLTGEVKQRLVAVLSELVARHQRARALVTEEMVDVFMAARPLPNMFG |
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| Function | Tryptophan--tRNA ligase, cytoplasmic [UniProtKB/Swiss-Prot:Q9SR15] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0540900 | OsNip_12t0540900-01 | Chr12 | 21625455 | 21629669 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCAGCGGCAGCGGAGGCCGTGACCGAGGTGGATGCCACGAACGAGGAGGGGGAGGAGGAGGAGCAGGTGGTGAACCCGTGGGAGGTGTCGGCGGGGAAAGGCGGGATCGACTACGACAAGCTCGTCGACCAGTTCGGCTGCCAGCGCCTCGACGACGCGCTCGTCGCCCGCGTCGCCCGCCTCACCGCCCGCCCCCCTCACCGCTTCCTCCGCCGCGGCCTCTTCTTCGCCCACCGGGATTTGAACGAGATACTGGATTTGTACGAGAAGGGGGAGAAGTTCTACCTCTACACGGGGAGGGGGCCCTCGTCGGAGGCGCTGCACCTCGGCCATCTCATCCCCTTCATGTTCACCAAATATCTGCAGGATGCTTTCAAGGTGCCCCTAGTAATACAGCTAACTGATGATGAGAAGTTCTTATGGAAGAATTTGACTGTTGAGGAAACTAAAAGGCTTGCCCGTGAAAATGCAAAAGATATCATTGCTTGTGGATTTGATGTCGAAAGGACTTTCATTTTCTCTGATTTTAATTATGTTGGAGGTGCTTTTTATGAAAACATGGTTAAAGTTGCCAGATGTGTGACATATAATAAGGTTGTTGGAATATTTGGATTCACCCCAGAGGATCATATAGGAAAAGTCAGCTTTCCTCCTGTGCAAGCGGTTCCATCATTCCCTTCTTCATTTCCACATCTCTTCTCTGGGAATGACCAACTACGGTGCTTAATCCCATGTGCAATAGACCAGGATCCTTATTTCAGGATGACCCGGGACGTTGCTCCAAGAATTGGTTACCAGAAACCATCATTAATTGAATCGAGATTTTTCCCTGCTCTTCAGGGGGAGAACACAAAAATGTCGGCCAGTGATCCAAATTCTGCAATATATGTGACAGATAGTGCTAAAGAAATAAAGACAAAGGTGAACAAATATGCGTTCTCAGGTGGCCGGGACTCAATTGAGCTCCATAGAAAACTTGGAGCTAACCTTGATGTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAGGAGTACAAGGAAGGAAGGATGCTGACGGGTGAAGTGAAGCAGCGCCTTGTTGCAGTTCTATCCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACCGAGGAGATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGA
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| Protein seq | MAAAAEAVTEVDATNEEGEEEEQVVNPWEVSAGKGGIDYDKLVDQFGCQRLDDALVARVARLTARPPHRFLRRGLFFAHRDLNEILDLYEKGEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLTVEETKRLARENAKDIIACGFDVERTFIFSDFNYVGGAFYENMVKVARCVTYNKVVGIFGFTPEDHIGKVSFPPVQAVPSFPSSFPHLFSGNDQLRCLIPCAIDQDPYFRMTRDVAPRIGYQKPSLIESRFFPALQGENTKMSASDPNSAIYVTDSAKEIKTKVNKYAFSGGRDSIELHRKLGANLDVDVPIKYLNFFLEDDNELEHIKKEYKEGRMLTGEVKQRLVAVLSELVARHQRARALVTEEMVDVFMAARPLPNMFG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0540900 | OsNip_12t0540900-02 | Chr12 | 21625457 | 21629511 | - | RAP2018-11-26 | ||
| CDS seq | ACGAACGAGGAGGGGGAGGAGGAGGAGCAGGTGGTGAACCCGTGGGAGGTGTCGGCGGGGAAAGGCGGGATCGACTACGACAAGCTCGTCGACCAGTTCGGCTGCCAGCGCCTCGACGACGCGCTCGTCGCCCGCGTCGCCCGCCTCACCGCCCGCCCCCCTCACCGCTTCCTCCGCCGCGGCCTCTTCTTCGCCCACCGGGATTTGAACGAGATACTGGATTTGTACGAGAAGGGGGAGAAGTTCTACCTCTACACGGGGAGGGGGCCCTCGTCGGAGGCGCTGCACCTCGGCCATCTCATCCCCTTCATGTTCACCAAATATCTGCAGGATGCTTTCAAGGTGCCCCTAGTAATACAGCTAACTGATGATGAGAAGTTCTTATGGAAGAATTTGACTGTTGAGGAAACTAAAAGGCTTGCCCGTGAAAATGCAAAAGATATCATTGCTTGTGGATTTGATGTCGAAAGGACTTTCATTTTCTCTGATTTTAATTATGTTGGAGGTGCTTTTTATGAAAACATGGTTAAAGTTGCCAGATGTGTGACATATAATAAGGTTGTTGGAATATTTGGATTCACCCCAGAGGATCATATAGGAAAAGTCAGCTTTCCTCCTGTGCAAGCGGTTCCATCATTCCCTTCTTCATTTCCACATCTCTTCTCTGGGAATGACCAACTACGGTGCTTAATCCCATGTGCAATAGACCAGGATCCTTATTTCAGGATGACCCGGGACGTTGCTCCAAGAATTGGTTACCAGAAACCATCATTAATTGAATCGAGATTTTTCCCTGCTCTTCAGGGGGAGAACACAAAAATGTCGGCCAGTGATCCAAATTCTGCAATATATGTGACAGATAGTGCTAAAGAAATAAAGACAAAGGTTTGCTTTAAGCATTGTATTTTAGTGGAAAACTACTGCAATTTTATATTTTACCTGAGGCCATTCAAATTTTGGTCTTCAATTAAGTCAAGCGTCCTGTAG
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| Protein seq | TNEEGEEEEQVVNPWEVSAGKGGIDYDKLVDQFGCQRLDDALVARVARLTARPPHRFLRRGLFFAHRDLNEILDLYEKGEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLTVEETKRLARENAKDIIACGFDVERTFIFSDFNYVGGAFYENMVKVARCVTYNKVVGIFGFTPEDHIGKVSFPPVQAVPSFPSSFPHLFSGNDQLRCLIPCAIDQDPYFRMTRDVAPRIGYQKPSLIESRFFPALQGENTKMSASDPNSAIYVTDSAKEIKTKVCFKHCILVENYCNFIFYLRPFKFWSSIKSSVL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr12 | 21626693 | 21627000 | - | OsNip_12t0540900-02 | OsNip_12t0540900-02,OsNip_12t0540900-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.855896 | 3.179824 | 10.501923 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g35570 | RBH | 2.536456 | 2.080380 | 2.635334 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0540900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016220 | RBH | 1.156314 | 17.413649 | 6.164752 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016340 | RBH | 0.295665 | 5.094337 | 4.539369 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0016700 | RBH | 2.114100 | 25.375532 | 12.338501 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016020 | RBH | 0.294752 | 1.279942 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0015510 | RBH | 8.599576 | 47.701813 | 22.533867 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0284500 | RBH | 17.0531885 | 28.2494735 | 27.0870955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015610 | RBH | 0.355678 | 1.760292 | 1.983799 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0317000 | RBH | 20.208885 | 25.307724 | 54.2908325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0015760 | RBH | 0.512236 | 0.383458 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016000 | RBH | 0.695315 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0015990 | RBH | 8.291977 | 64.063156 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0015990 | RBH | 1.063066 | 0.0 | 2.463261 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016220 | RBH | 0.214276 | 21.944225 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G016030 | RBH | 1.301398 | 12.434776 | 6.674940 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0015710 | RBH | 3.427258 | 24.186140 | 17.174042 |
