Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_04g0030580 | OGI:04100510 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr04:32944240-32945665 | ||||||||
| Gene Symbol | ARF8, OsARF8, OsARF12, ARF12 | ||||||||||
| DNA seq | TCACACCAAAGGAGGGAAGACGCGCTCAGCAGCACGGCGGGGCACGGAGAACCCCCCGTGCGTGCTGGTGTCGCTCGCCGTCAATGTCTTGCAGAAGTAATTCGTCGGCTGCTTGCTCATTATCCCCATCTCCGCGGGAAGGTACGCATCGTTCTGCTCCTGCTGCACGAATGAACACATCCAAAAAAACCATCAAATTAACCGCTTAGAATATTTCACGCCTTCAAACCATCAAAACCTCAGCACTGCAAACATCATGCAAAAACCCCAGGCGCCTTACTGGGTTCAGTGGCTGGAGCGTCATCTGCGCGTACACCTCGTCAGTCTCCACATCCGCCTGCAAAAAAATTGCCAGCCCAAGTCAGCACCGACAGCCATGGAGATAAACCGGAGGAGTGGAGTGGAGGTGACGCCGCATCGATCTGAGAAATGCCCCGAGAAATTAGGGCAAGGAACCACGTACATGCATTGTGACATCGTGGAGCTGGCAGATCAGCTGCGCCGGCAGGTTGGGGTAGTTCGGGATGTGACCCTCCACCTCCTTGTTCGTCGACGCCGCCACCTTCACGTATGCAAAGCTCACCCGCGTCAGAAACAAGAGAAACCAGCAGAGATAGAGAGAGAGAAGCAAAGCAAGCGCGCCCACGAGACGGCTGAGGAGGTGAGCTCAGCCTCACCTGCTCGCTGTGGCCTTGCGGGAAGTAGACGACGCGCGTGCCGACGGTGGGGAGGCAGACGAGCGGGCCGGCGCAGGCGTGCCATAGCTCCGAGTTGAGGCACTTCTTCTCTGCAGCAGCAGCAGCAGCAGCAGATCGAGTCATCAACCAAACGAGAAGGGAAGTAAAGCGAACCGCGAAGCGAAGCGGCGGAAACAAACCTAGCCACCCACCTTCCTCGGGCGGCGCGGGGGGCGGCGGCGGCTGCGGCGGCCCGATGCTGGCCGCCGACGACGAGCTCATCTCCTCCTCCTCCGACCAAACCAGAGAAGCACAAACTCTTAATCTATCCCCTCACAAATCCACCCGAAAACCCCATCCCCCTCCTCAAATCGGCCGCATTCTGCACCACCACCACCAACACCAACACCAACAACAAGCATCAACAAACCACAGAGCAAAGCAAAGCAAAATCAATCCAACCCCCACCCCGCCGGCAAGGGACCAACCAACCTTTCTCTTCCGCTCACCCGAGCTCGGAGATCGCCACCATGGTGGGGAGAAAGGGTGGGGTTGGAGAGAGAGAGAGAGAGCGCAAGAGGGGTGGAAATGATTAGGTTTGTGGCATTTAAGCGAGAGAGAGAGAGAGAGAGAAAGAGAGGGGTTCGCGTGGTTCGAGTAGTGCGAGTGCGTGTGTGCGTGTGCGCGACGAGGGGGGGCGCAGCGCAGGGGGCCGTACAGTAGCGTGAGCTCCCGCACAGTGTCTGAAG
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| CDS seq | ATGAGCTCGTCGTCGGCGGCCAGCATCGGGCCGCCGCAGCCGCCGCCGCCCCCCGCGCCGCCCGAGGAAGGTGGGTGGCTAGAGAAGAAGTGCCTCAACTCGGAGCTATGGCACGCCTGCGCCGGCCCGCTCGTCTGCCTCCCCACCGTCGGCACGCGCGTCGTCTACTTCCCGCAAGGCCACAGCGAGCAGGTGGCGGCGTCGACGAACAAGGAGGTGGAGGGTCACATCCCGAACTACCCCAACCTGCCGGCGCAGCTGATCTGCCAGCTCCACGATGTCACAATGCATGCGGATGTGGAGACTGACGAGGTGTACGCGCAGATGACGCTCCAGCCACTGAACCCACAGGAGCAGAACGATGCGTACCTTCCCGCGGAGATGGGGATAATGAGCAAGCAGCCGACGAATTACTTCTGCAAGACATTGACGGCGAGCGACACCAGCACGCACGGGGGGTTCTCCGTGCCCCGCCGTGCTGCTGAGCGCGTCTTCCCTCCTTTGGTGTGA
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| Protein seq | MSSSSAASIGPPQPPPPPAPPEEGGWLEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADVETDEVYAQMTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLV |
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| Function | Auxin response factor 12 [UniProtKB/Swiss-Prot:Q0J951] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_04g0030580 | OsAzu_04g0030580.01 | Chr04 | 32944240 | 32945665 | - | NAM | ||
| CDS seq | ATGAGCTCGTCGTCGGCGGCCAGCATCGGGCCGCCGCAGCCGCCGCCGCCCCCCGCGCCGCCCGAGGAAGGTGGGTGGCTAGAGAAGAAGTGCCTCAACTCGGAGCTATGGCACGCCTGCGCCGGCCCGCTCGTCTGCCTCCCCACCGTCGGCACGCGCGTCGTCTACTTCCCGCAAGGCCACAGCGAGCAGGTGGCGGCGTCGACGAACAAGGAGGTGGAGGGTCACATCCCGAACTACCCCAACCTGCCGGCGCAGCTGATCTGCCAGCTCCACGATGTCACAATGCATGCGGATGTGGAGACTGACGAGGTGTACGCGCAGATGACGCTCCAGCCACTGAACCCACAGGAGCAGAACGATGCGTACCTTCCCGCGGAGATGGGGATAATGAGCAAGCAGCCGACGAATTACTTCTGCAAGACATTGACGGCGAGCGACACCAGCACGCACGGGGGGTTCTCCGTGCCCCGCCGTGCTGCTGAGCGCGTCTTCCCTCCTTTGGTGTGA
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| Protein seq | MSSSSAASIGPPQPPPPPAPPEEGGWLEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADVETDEVYAQMTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_04g0030580 | OsAzu_04g0030580.02 | Chr04 | 32944240 | 32945665 | - | NAM | ||
| CDS seq | ATGAGCTCGTCGTCGGCGGCCAGCATCGGGCCGCCGCAGCCGCCGCCGCCCCCCGCGCCGCCCGAGGAAGAGAAGAAGTGCCTCAACTCGGAGCTATGGCACGCCTGCGCCGGCCCGCTCGTCTGCCTCCCCACCGTCGGCACGCGCGTCGTCTACTTCCCGCAAGGCCACAGCGAGCAGGTGGCGGCGTCGACGAACAAGGAGGTGGAGGGTCACATCCCGAACTACCCCAACCTGCCGGCGCAGCTGATCTGCCAGCTCCACGATGTCACAATGCATGCGGATGTGGAGACTGACGAGGTGTACGCGCAGATGACGCTCCAGCCACTGAACCCACAGGAGCAGAACGATGCGTACCTTCCCGCGGAGATGGGGATAATGAGCAAGCAGCCGACGAATTACTTCTGCAAGACATTGACGGCGAGCGACACCAGCACGCACGGGGGGTTCTCCGTGCCCCGCCGTGCTGCTGAGCGCGTCTTCCCTCCTTTGGTGTGA
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| Protein seq | MSSSSAASIGPPQPPPPPAPPEEEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADVETDEVYAQMTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr04 | 32945026 | 32945129 | - | OsAzu_04g0030580.01 | OsAzu_04g0030580.02,OsAzu_04g0030580.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.199933 | 0.0 | 12.742163 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0671900 | RBH | 0.074891 | 0.856524 | 17.658920 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g57610 | RBH | 0.049123 | 0.558772 | 3.717318 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0671900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004990 | SBH | 0.195851 | 5.542718 | 18.106483 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0031360 | RBH | 0.148172 | 2.369857 | 9.462124 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0030920 | RBH | 0.530917 | 4.833518 | 51.754696 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0030750 | RBH | 0.0 | 0.136070 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0031000 | RBH | 0.518877 | 11.769078 | 53.850086 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0540500 | SBH | 12.1175535 | 9.39988 | 21.5870075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0029650 | RBH | 0.111205 | 0.909333 | 6.990660 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0546400 | RBH | 16.9733265 | 13.1471335 | 83.8222925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0030090 | RBH | 0.026750 | 0.156808 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0029930 | RBH | 0.129084 | 9.396739 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0030050 | RBH | 1.413532 | 6.696929 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0030600 | SBH | 0.265367 | 0.943811 | 5.489696 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0030610 | RBH | 0.034502 | 3.753867 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G030100 | RBH | 0.0 | 0.000000 | 5.906584 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0029800 | RBH | 0.000000 | 0.0 | 14.551069 |
