Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLiXu_04g0030600 OGI:04100510 | 16/16 LIU XU | Os125827RS1 | Gramene(+IsoSeq) Chr04:36557447-36564909
Gene Symbol ARF8, OsARF8, OsARF12, ARF12
DNA seq

atcacaacagtatatgattagcattaataataaaagcaaaatattaggcactacagaaaaaacttcagattgacagctcctctcgaaactgacataaccggacaatcggtgaaaatccagatcctacaacacgaattgaaacaatcctcgtgcgcttcgattattgcagttttttttggttgaaagcatgtagaggaatctcaatacacataaatcctgatacaatatcaactaagtttaatgtctaggaagactcgatgaaacatgaaaacagtggactgccgtgcgagttacaaatcatctaggataagagttaaaccgatactgattcctaagtggaacctacaaaatatcaggtttcgtggttccggtggcctgcaccgaataggtaacagagagttctggaaacatgtacggcgtacatgcaagatacaaatttgggacttctgacgacgtgcattgtcgagagcaagagtgccaccatgcactgcagaatcctcctggaagccctgtgatagtataccaggacatgttagtatgcagagatgaatatgcataaaaagactctaaattaaatttgagtcgtcaattaagatgtgagttattccgagcaataaaaattagagcaaacagacatacttcaacccgcacaatgagaccattttacattcaataagggacaaaaaacacatgatgccaatatgtcaacaactatcgaagtacacaacatgataacagatttactcagaaaagaacatctctatccagtcataggtttttaaggattagtgtgggatttggtaatcgttacaataaatataattatgacatcttaccagaaatggcaccatgttctctcacttcaggacagataccgtggatcatttccttgctttcccatcttatgcacatcctcaggtgaaagtatcttgatgtaccatacactattcacaaaggacctacatcatatgaggaaggtcagtttcaagaagaatcatgtctgatgtttactctcacgaagggtcttgggtaactgagcatcaacatgtagtgactgaccaacacatattattgaaggaagaacagtctagtaaaaaaatttaacatattaatacacattaaagatgtatgactgaatgcacatgaattctgtttgagatcacaattaggcaccgaacattgcaaaaatatactccatataacactagtacttttaaacatattcattagatactgtccatgggctgtcaacatgtctttcagtgaatgaagaagggatatccattcacattgtacatacctttcctcgataagctattagttgtggaaaccaggaaaccaaagtattgtactccctccgtttcataatgtaagactttttagcattcctcacattcatatagatgttaatgaatctagacacacatatatttctagattcattaacatctatatgaatgtgggcaatgctagaaagtcttacattatgaaacggaggaagtataagacagccacttttgcacttgctagtcaagccaaattttgttgatcttaggcacgtttaatatctttaaattatttagatatacaatgaagttacaatgcctgatgtagatttgaaatttttacttagcatgttaacttggccgttttgaggccaacatcaattaagagattcagtttgtagtgtgcacacatggacagggtatgccaagtgtagtactaaaatttaagcagatttttttgcaaccaaatcatagaacggtaagatgaaacttaaatttatattgcttactaaaacttgaatttgtagtgcgcatgcatggatattgattactaaaactaataaataaatcagaattctgagaatatttcttactcccaagggtcgtctccaaggagaagcacatcattctccctgtcgacgaatacaagctgccagcctgatctatcagggtcgtccaattgacccttaatgccgaacatctgacccagttcttctcgaagttcagcataattagagaaccgggtgatgtccaacgacctcccaaccgaacctgacttgtaaacctgcaattttacaatggttccatgaaaagaagaatatatattttttggaggaaaaagaggagctcatatttgacctagcaacaatgcaaattatactagttaccttcacaaatgttctggttgctggatcgttctctcctgtattttgcaataaaccagaagagtcgtccaagcaaccatacattgcattctgcagataagttgatccagaagggatcgttgataagttgccatccgaaacattcgaagtcagattaggaaccatgttgtacaggagggatgaagagtcaacttgtggactaaaaagggactggttttgcacatcacgaccaattttgttttcaacagaaccatctttgcttgtgggtgagttatgcaaaaccgagcccccaaaagacactgactgtgaacccataaacttctgcttccatgcctgttgctgctgctgctcactagctacaggctgattaaatcgagataagtccacagctttcgaacttccctgaaggaagctcgaatccaacatgttatcactactgctagaggtgatgaagcttgaagaattcgcattaggatcagagaagccaaatttttctcgcaaatgactcggtaatgatgttggacttgggagaactgcacttgtaggaacttggtagctttgatctggttgaatcttctgcttctgatcattctgaacttgctgcatttgctgtagttgctggagttgctgttgtatagcacttgggctcaacatcgtttggatattttgggcatcaggattaattatctgttgctggcttgcttgctgcagaatttgttgctgcaataatgggttgaggttgcagtgttcttgaggggactgcataggttgctgaaggtgcaagaattgctgttttaagtaaccaccagattgggaagcagcagcagcagcaactactgcttggtactgatcgtgatcgctgctcagtaaggatggatggagcctctgttgtccccaggagccaataccaggtgactgaaagttcagagactgaaaacctccctcaccagcaactcctctcagccacattaaagcattgctgtcatcttaagtgtgatacagcagttaataaaagaacagaaatatgaatgagagatactagaaaatggaattatgtcaggcagatcaatgcattctccataacaagaatgcacagaaagacaatgaataaaaagaatgcatattatagaacgttacatttgctacggaagagccttatcaaataacattgatccaccttgggtgcttaagaaatggaaggaagagatcaacttttcacttacaccataacttgttttacttttagcctatatgagcattttataaagttccctgatcaatctctgtatccagaaccatcatttgaggcatattgttcacagtagagaacactgacttgaactatagcctcttgctcttgcaccacaatctcaacttcaggttattttagttagaatcatcagctggttgatgtggcaggttcagaaatttattaaggctgtggcttcagtaatttgagtgtgatggctaaaacactatgtaaatgcaccaaataaacttccacatgataggcgcacacacatagcaagcatacagcaaaatagcttcaaaactagtttatgcctgacacacagtaacaagaatcttaagcgtaccatgcagggaagcaactcctgaataccaaggatgcttaactctcagtgggaacagagatggatacattggaaaggttgtcaatggttcaatttcccataaagaaactcttggtggcctttcccctgcagttgattcatcccaaccaacctgaaaatatcacactagttagtggaactgtggaagcaagcactagtgcaataacatctgaaggcagttccatgattgttataatgaaaaccagaggtacagatcataagaaaatgcaactaaagaagatgaagataatcaggaaagacaacacaaatcacgtttaaatccccacagctctttagagcaacctcaagtaatataaaaattaccttcacagatctccaataggaactaggccaacggactgggtctgcatcactaacttcagttatagtccccatatacctgtgtttcattaaagtgtgcattgggcgcattagtatattatggatttttatagaggcccaattataaaattcccataaataatggggtgatgtcctgacagatgcgcagatttttcaagaacatcaacgcgtgaaagcataaaaagtacagataatggcaatttcagccactggcatagtcacatacatcctacaaacatgtataggatctcctggtgctaggtaaccaagtattatctaaaaaaagtaccatcatttatatatttggcctagattatagaataaggactgagcattgacatttgctaggtcacctgcgaacgcttgattcctcagtctcaaacaacatcctgaaccgcatcccaaccgatatccgggtgtgaaaaacagccttgatgtattttgacagtggtatgacaaattctgatggacttgccctacaaacactctttctattaacggtgtacatggggaggaaaaacaacaatgcatatatactaatttaaaagtccaaattaccgggggttgtagaaaatagtgaaacggctgtttgtagcagcagcatgagctgctgctgcaaggagacctatgtgcatgctatcgcttgaaagaacagaggaaggcatcacagtctgtggccgactggcacgtcttattccaagtaaaagctggtttttctcgttcctgagtcagagaatcaacaatgcgccctactcattagcacaggtaaaaaagaaaatcacaaatgcaagagagatggaaaacaaaccatatgaaaagcacagaatctccagcaacaagtctcttagcactgacaaaaacgctccagccagtggttagcaggtgtcgtttgggttggcctgtcaaaaacagcatattactacaaaagatagtaacatggcatgttcAaaaatataaaactactaaacacaattactaacaacatcattagtgttgagcagatcccatttcataatcaatacagcacaagtacctcaagcatatgtactatcaacatttatgttaagacaacatttttttagttattgtgatcaatacaaagtacattctgtgtcagaaaacacactaacaataagttcaaccctgcagaaagatgagaattcaaggcatacaaaaagaagcctacaccgagaattatactgtccagtacagtgattgctcattgtgcaattttgtaagacctgcgaactctagtaaatatttcagtacgcctctgaaagtatcatgtattcatatgtcaattgtaacttgatccactgctaactatcctaacatattaaaatttgatattttttatgtgcttatccaattaatgatctcgtaacttcatttctatgcataaccctaattcaatcaagtatctcttgctccattcacaccaactgatttttaagtgaaaaagacgcttacatcacattgtgtgagaatggttgaagtttttctcagaacacttgaaaatgtttttattaggaaggttttaagccatgattacaaagggtgaacttatcgaatggaaaaggggcagagatgattattaggaaattccctttaagaatatcataattcaccgttatgaagaattcaggactgccataagctctacagatttttaagaagttacctcgaaagatgtgcctgaacttccactcgatgtcatgaatatcccgtgcaattagctcctgggctggaggctgctgtgtgaaatcctacaaaccacactataccacctgttattggcaacagcaaaacccaaccacccaataagtacaagaaaggagcacagccccaaattacaccactcatcacaccagaggagggaagacgcgctcagcagcacggcggggcacggagaaccccccgtgcgtgctggtgtcgctcgccgtcaatgtcttgcagaagtaattcgtcggctgcttgctcattatccccatctccgcgggaaggtacgcatcgttctgctcctgctgcacgaatgaacacatccaaaaaaaccatcaaactaaccgcttagaatatttcacgccttcaaaccatcaaaacctcagcactgcaaacatcatgcaaaaaccccaggcgccttactgggttcagtggctggagcgtcatctgcgcgtacacctcgtcagtctccacatccgcctgcaaaaaaattgccagcccaagtcagcaccgacagccatggagataaaccggaggagtggagtggaggtgacgccgcatcgatctgagaaatgccccgagaaattagggcaaggaaccacgtacatgcattgtgacatcgtggagctggcagatcagctgcgccggcaggttggggtagttcgggatgtgaccctccacctccttgttcgtcgacgccgccaccttcacgtatgcaaagctcacccgcgtcagaaacaagagaaaccagcagagatagagagagagaagcaaagcaagcgcgcccacgagacggctgaggaggtgagctcagcctcacctgctcgctgtggccttgcgggaagtagacgacgcgcgtgccgacggtggggaggcagacgagcgggccggcgcaggcgtgccatagctccgagttgaggcacttcttctctgcagcagcagcagatcgagtcatcaaccaaacgagaagggaagtaaagcgaaccgcgaagcgaagcggcggaaacaaacctagccacccaccttcctcgggcggcgcggggggcggcggcggctgcggcggcccgatgctggccgccgacgacgagctcatctcctcctcctccgaccaaaccagagaagcacaaactcttaatctatcccctcacaaatccacccgaaaaccccatccccctcctcaaatcggccgcattctgcaccaccaccaccaccaccaccaacaccaacaccaacaacaacaagcatcaacaaaccagagagcaaagcaaagcaaaaccaatccaaCccccaccccgccggcaagggaccaaccaacctttctcttccgctcacccgagctcggagatcgccaccatggtggggagaaagggtggggttggagagagagagagagagcgcaagaggggtggaaatgattaggtttgtggcatttaagcgagagagagagagagagagagagagagagagagaggggttcgcgtggttcgagtagtgcgagtgcgtgtgtgcgtgtgcgcgacgaggaggggcgcagcgcagggggccgtacagtagcgtgagctcccgcacagtgtctgaag

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CDS seq

atgagctcgtcgtcggcggccagcatcgggccgccgcagccgccgccgccccccgcgccgcccgaggaaggtgggtggctaggtttgtttccgccgcttcgcttcgcggttcgctttacttcccttctcgtttggttgatgactcgatctgctgctgctgcagagaagaagtgcctcaactcggagctatggcacgcctgcgccggcccgctcgtctgcctccccaccgtcggcacgcgcgtcgtctacttcccgcaaggccacagcgagcaggtggcggcgtcgacgaacaaggaggtggagggtcacatcccgaactaccccaacctgccggcgcagctgatctgccagctccacgatgtcacaatgcatgcggatgtggagactgacgaggtgtacgcgcagatgacgctccagccactgaacccagtaaggcgcctggggtttttgcatgatgtttgcagtgctgaggttttgatgcaggagcagaacgatgcgtaccttcccgcggagatggggataatgagcaagcagccgacgaattacttctgcaagacattgacggcgagcgacaccagcacgcacggggggttctccgtgccccgccgtgctgctgagcgcgtcttccctcctctggttaatatgctgtttttgacaggccaacccaaacgacacctgctaaccactggctggagcgtttttgtcagtgctaagagacttgttgctggagattctgtgcttttcatatggaacgagaaaaaccagcttttacttggaataagacgtgccagtcggccacagactgtgatgccttcctctgttctttcaagcgatagcatgcacataggtctccttgcagcagcagctcatgctgctgctacaaacagccgtttcactattttctacaacccccgggcaagtccatcagaatttgtcataccactgtcaaaatacatcaaggctgtttttcacacccggatatcggttgggatgcggttcaggatgttgtttgagactgaggaatcaagcgttcgcaggtatatggggactataactgaagttagtgatgcagacccagtccgttggcctagttcctattggagatctgtgaaggttggttgggatgaatcaactgcaggggaaaggccaccaagagtttctttatgggaaattgaaccattgacaacctttccaatgtatccatctctgttcccactgagagttaagcatccttggtattcaggagttgcttccctgcatgatgacagcaatgctttaatgtggctgagaggagttgctggtgagggaggttttcagtctctgaactttcagtcacctggtattggctcctggggacaacagaggctccatccatccttactgagcagcgatcacgatcagtaccaagcagtagttgctgctgctgctgcttcccaatctggtggttacttaaaacagcaattcttgcaccttcagcaacctatgcagtcccctcaagaacactgcaacctcaacccattattgcagcaacaaattctgcagcaagcaagccagcaacagataattaatcctgatgcccaaaatatccaaacgatgttgagcccaagtgctatacaacagcaactccagcaactacagcaaatgcagcaagttcagaatgatcagaagcagaagattcaaccagatcaaagctaccaagttcctacaagtgcagttctcccaagtccaacatcattaccgagtcatttgcgagaaaaatttggcttctctgatcctaatgcgaattcttcaagcttcatcacctctagcagtagtgataacatgttggattcgagcttccttcagggaagttcgaaagctgtggacttatctcgatttaatcagcctgtagctagtgagcagcagcagcaacaggcatggaagcagaagtttatgggttcacagtcagtgtcttttgggggctcggttttgcataactcacccacaagcaaagatggttctgttgaaaacaaaattggtcgtgatgtgcaaaaccagtccctttttagtccacaagttgactcttcatccctcctgtacaacatggttcctaatctgacttcgaatgtttcggatggcaacttatcaacgatcccttctggatcaacttatctgcagaatgcaatgtatggttgcttggacgactcttctggtttattgcaaaatacaggagagaacgatccagcaaccagaacatttgtgaaggtttacaagtcaggttcggttgggaggtcgttggacatcacccggttctctaattatgctgaacttcgagaagaactgggtcagatgttcggcattaagggtcaattggacgaccctgatagatcaggctggcagcttgtattcgtcgacagggagaatgatgtgcttctccttggagacgacccttgggagtcctttgtgaatagtgtatggtacatcaagatactttcacctgaggatgtgcataagatgggaaagcaaggaaatgatccacggtatctgtcctga

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Protein seq

MSSSSAASIGPPQPPPPPAPPEEGGWLGLFPPLRFAVRFTSLLVWLMTRSAAAAEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADVETDEVYAQMTLQPLNPVRRLGFLHDVCSAEVLMQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLVNMLFLTGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSGVASLHDDSNALMWLRGVAGEGGFQSLNFQSPGIGSWGQQRLHPSLLSSDHDQYQAVVAAAAASQSGGYLKQQFLHLQQPMQSPQEHCNLNPLLQQQILQQASQQQIINPDAQNIQTMLSPSAIQQQLQQLQQMQQVQNDQKQKIQPDQSYQVPTSAVLPSPTSLPSHLREKFGFSDPNANSSSFITSSSSDNMLDSSFLQGSSKAVDLSRFNQPVASEQQQQQAWKQKFMGSQSVSFGGSVLHNSPTSKDGSVENKIGRDVQNQSLFSPQVDSSSLLYNMVPNLTSNVSDGNLSTIPSGSTYLQNAMYGCLDDSSGLLQNTGENDPATRTFVKVYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKMGKQGNDPRYLS

Function Auxin response factor 12 [UniProtKB/Swiss-Prot:Q258Y5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLiXu_04g0030600 OsLiXu_04g0030600.03 Chr04 36557447 36564574 - NAM
CDS seq

atgagctcgtcgtcggcggccagcatcgggccgccgcagccgccgccgccccccgcgccgcccgaggaaggtgggtggctaggtttgtttccgccgcttcgcttcgcggttcgctttacttcccttctcgtttggttgatgactcgatctgctgctgctgcagagaagaagtgcctcaactcggagctatggcacgcctgcgccggcccgctcgtctgcctccccaccgtcggcacgcgcgtcgtctacttcccgcaaggccacagcgagcaggtggcggcgtcgacgaacaaggaggtggagggtcacatcccgaactaccccaacctgccggcgcagctgatctgccagctccacgatgtcacaatgcatgcggatgtggagactgacgaggtgtacgcgcagatgacgctccagccactgaacccagtaaggcgcctggggtttttgcatgatgtttgcagtgctgaggttttgatgcaggagcagaacgatgcgtaccttcccgcggagatggggataatgagcaagcagccgacgaattacttctgcaagacattgacggcgagcgacaccagcacgcacggggggttctccgtgccccgccgtgctgctgagcgcgtcttccctcctctggttaatatgctgtttttgacaggccaacccaaacgacacctgctaaccactggctggagcgtttttgtcagtgctaagagacttgttgctggagattctgtgcttttcatatggaacgagaaaaaccagcttttacttggaataagacgtgccagtcggccacagactgtgatgccttcctctgttctttcaagcgatagcatgcacataggtctccttgcagcagcagctcatgctgctgctacaaacagccgtttcactattttctacaacccccgggcaagtccatcagaatttgtcataccactgtcaaaatacatcaaggctgtttttcacacccggatatcggttgggatgcggttcaggatgttgtttgagactgaggaatcaagcgttcgcaggtatatggggactataactgaagttagtgatgcagacccagtccgttggcctagttcctattggagatctgtgaaggttggttgggatgaatcaactgcaggggaaaggccaccaagagtttctttatgggaaattgaaccattgacaacctttccaatgtatccatctctgttcccactgagagttaagcatccttggtattcaggagttgcttccctgcatgatgacagcaatgctttaatgtggctgagaggagttgctggtgagggaggttttcagtctctgaactttcagtcacctggtattggctcctggggacaacagaggctccatccatccttactgagcagcgatcacgatcagtaccaagcagtagttgctgctgctgctgcttcccaatctggtggttacttaaaacagcaattcttgcaccttcagcaacctatgcagtcccctcaagaacactgcaacctcaacccattattgcagcaacaaattctgcagcaagcaagccagcaacagataattaatcctgatgcccaaaatatccaaacgatgttgagcccaagtgctatacaacagcaactccagcaactacagcaaatgcagcaagttcagaatgatcagaagcagaagattcaaccagatcaaagctaccaagttcctacaagtgcagttctcccaagtccaacatcattaccgagtcatttgcgagaaaaatttggcttctctgatcctaatgcgaattcttcaagcttcatcacctctagcagtagtgataacatgttggattcgagcttccttcagggaagttcgaaagctgtggacttatctcgatttaatcagcctgtagctagtgagcagcagcagcaacaggcatggaagcagaagtttatgggttcacagtcagtgtcttttgggggctcggttttgcataactcacccacaagcaaagatggttctgttgaaaacaaaattggtcgtgatgtgcaaaaccagtccctttttagtccacaagttgactcttcatccctcctgtacaacatggttcctaatctgacttcgaatgtttcggatggcaacttatcaacgatcccttctggatcaacttatctgcagaatgcaatgtatggttgcttggacgactcttctggtttattgcaaaatacaggagagaacgatccagcaaccagaacatttgtgaaggtttacaagtcaggttcggttgggaggtcgttggacatcacccggttctctaattatgctgaacttcgagaagaactgggtcagatgttcggcattaagggtcaattggacgaccctgatagatcaggctggcagcttgtattcgtcgacagggagaatgatgtgcttctccttggagacgacccttgggagtcctttgtgaatagtgtatggtacatcaagatactttcacctgaggatgtgcataagatgggaaagcaaggaaatgatccacggtatctgtcctga

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Protein seq

MSSSSAASIGPPQPPPPPAPPEEGGWLGLFPPLRFAVRFTSLLVWLMTRSAAAAEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADVETDEVYAQMTLQPLNPVRRLGFLHDVCSAEVLMQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLVNMLFLTGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSGVASLHDDSNALMWLRGVAGEGGFQSLNFQSPGIGSWGQQRLHPSLLSSDHDQYQAVVAAAAASQSGGYLKQQFLHLQQPMQSPQEHCNLNPLLQQQILQQASQQQIINPDAQNIQTMLSPSAIQQQLQQLQQMQQVQNDQKQKIQPDQSYQVPTSAVLPSPTSLPSHLREKFGFSDPNANSSSFITSSSSDNMLDSSFLQGSSKAVDLSRFNQPVASEQQQQQAWKQKFMGSQSVSFGGSVLHNSPTSKDGSVENKIGRDVQNQSLFSPQVDSSSLLYNMVPNLTSNVSDGNLSTIPSGSTYLQNAMYGCLDDSSGLLQNTGENDPATRTFVKVYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKMGKQGNDPRYLS

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Gene Transcript Chromosome Start End Strand Source
OsLiXu_04g0030600 OsLiXu_04g0030600.02 Chr04 36558228 36564909 - NAM
CDS seq

atgagctcgtcgtcggcggccagcatcgggccgccgcagccgccgccgccccccgcgccgcccgaggaaggtgggtggctagagaagaagtgcctcaactcggagctatggcacgcctgcgccggcccgctcgtctgcctccccaccgtcggcacgcgcgtcgtctacttcccgcaaggccacagcgagcaggtggcggcgtcgacgaacaaggaggtggagggtcacatcccgaactaccccaacctgccggcgcagctgatctgccagctccacgatgtcacaatgcatgcggatgtggagactgacgaggtgtacgcgcagatgacgctccagccactgaacccacaggagcagaacgatgcgtaccttcccgcggagatggggataatgagcaagcagccgacgaattacttctgcaagacattgacggcgagcgacaccagcacgcacggggggttctccgtgccccgccgtgctgctgagcgcgtcttccctcctctggttaatatgctgtttttgacaggccaacccaaacgacacctgctaaccactggctggagcgtttttgtcagtgctaagagacttgttgctggagattctgtgcttttcatatggaacgagaaaaaccagcttttacttggaataagacgtgccagtcggccacagactgtgatgccttcctctgttctttcaagcgatagcatgcacataggtctccttgcagcagcagctcatgctgctgctacaaacagccgtttcactattttctacaacccccgggcaagtccatcagaatttgtcataccactgtcaaaatacatcaaggctgtttttcacacccggatatcggttgggatgcggttcaggatgttgtttgagactgaggaatcaagcgttcgcaggtatatggggactataactgaagttagtgatgcagacccagtccgttggcctagttcctattggagatctgtgaaggttggttgggatgaatcaactgcaggggaaaggccaccaagagtttctttatgggaaattgaaccattgacaacctttccaatgtatccatctctgttcccactgagagttaagcatccttggtattcaggagttgcttccctgcatgatgacagcaatgctttaatgtggctgagaggagttgctggtgagggaggttttcagtctctgaactttcagtcacctggtattggctcctggggacaacagaggctccatccatccttactgagcagcgatcacgatcagtaccaagcagtagttgctgctgctgctgcttcccaatctggtggttacttaaaacagcaattcttgcaccttcagcaacctatgcagtcccctcaagaacactgcaacctcaacccattattgcagcaacaaattctgcagcaagcaagccagcaacagataattaatcctgatgcccaaaatatccaaacgatgttgagcccaagtgctatacaacagcaactccagcaactacagcaaatgcagcaagttcagaatgatcagaagcagaagattcaaccagatcaaagctaccaagttcctacaagtgcagttctcccaagtccaacatcattaccgagtcatttgcgagaaaaatttggcttctctgatcctaatgcgaattcttcaagcttcatcacctctagcagtagtgataacatgttggattcgagcttccttcagggaagttcgaaagctgtggacttatctcgatttaatcagcctgtagctagtgagcagcagcagcaacaggcatggaagcagaagtttatgggttcacagtcagtgtcttttgggggctcggttttgcataactcacccacaagcaaagatggttctgttgaaaacaaaattggtcgtgatgtgcaaaaccagtccctttttagtccacaagttgactcttcatccctcctgtacaacatggttcctaatctgacttcgaatgtttcggatggcaacttatcaacgatcccttctggatcaacttatctgcagaatgcaatgtatggttgcttggacgactcttctggtttattgcaaaatacaggagagaacgatccagcaaccagaacatttgtgaaggtttacaagtcaggttcggttgggaggtcgttggacatcacccggttctctaattatgctgaacttcgagaagaactgggtcagatgttcggcattaagggtcaattggacgaccctgatagatcaggctggcagcttgtattcgtcgacagggagaatgatgtgcttctccttggagacgacccttgggagtcctttgtgaatagtgtatggtacatcaagatactttcacctgaggatgtgcataagatgggaaagcaaggaaatgatccacggtatctgtcctga

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Protein seq

MSSSSAASIGPPQPPPPPAPPEEGGWLEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADVETDEVYAQMTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLVNMLFLTGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSGVASLHDDSNALMWLRGVAGEGGFQSLNFQSPGIGSWGQQRLHPSLLSSDHDQYQAVVAAAAASQSGGYLKQQFLHLQQPMQSPQEHCNLNPLLQQQILQQASQQQIINPDAQNIQTMLSPSAIQQQLQQLQQMQQVQNDQKQKIQPDQSYQVPTSAVLPSPTSLPSHLREKFGFSDPNANSSSFITSSSSDNMLDSSFLQGSSKAVDLSRFNQPVASEQQQQQAWKQKFMGSQSVSFGGSVLHNSPTSKDGSVENKIGRDVQNQSLFSPQVDSSSLLYNMVPNLTSNVSDGNLSTIPSGSTYLQNAMYGCLDDSSGLLQNTGENDPATRTFVKVYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKMGKQGNDPRYLS

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Gene Transcript Chromosome Start End Strand Source
OsLiXu_04g0030600 OsLiXu_04g0030600.01 Chr04 36558228 36564909 - NAM
CDS seq

atgagctcgtcgtcggcggccagcatcgggccgccgcagccgccgccgccccccgcgccgcccgaggaagagaagaagtgcctcaactcggagctatggcacgcctgcgccggcccgctcgtctgcctccccaccgtcggcacgcgcgtcgtctacttcccgcaaggccacagcgagcaggtggcggcgtcgacgaacaaggaggtggagggtcacatcccgaactaccccaacctgccggcgcagctgatctgccagctccacgatgtcacaatgcatgcggatgtggagactgacgaggtgtacgcgcagatgacgctccagccactgaacccacaggagcagaacgatgcgtaccttcccgcggagatggggataatgagcaagcagccgacgaattacttctgcaagacattgacggcgagcgacaccagcacgcacggggggttctccgtgccccgccgtgctgctgagcgcgtcttccctcctctggttaatatgctgtttttgacaggccaacccaaacgacacctgctaaccactggctggagcgtttttgtcagtgctaagagacttgttgctggagattctgtgcttttcatatggaacgagaaaaaccagcttttacttggaataagacgtgccagtcggccacagactgtgatgccttcctctgttctttcaagcgatagcatgcacataggtctccttgcagcagcagctcatgctgctgctacaaacagccgtttcactattttctacaacccccgggcaagtccatcagaatttgtcataccactgtcaaaatacatcaaggctgtttttcacacccggatatcggttgggatgcggttcaggatgttgtttgagactgaggaatcaagcgttcgcaggtatatggggactataactgaagttagtgatgcagacccagtccgttggcctagttcctattggagatctgtgaaggttggttgggatgaatcaactgcaggggaaaggccaccaagagtttctttatgggaaattgaaccattgacaacctttccaatgtatccatctctgttcccactgagagttaagcatccttggtattcaggagttgcttccctgcatgatgacagcaatgctttaatgtggctgagaggagttgctggtgagggaggttttcagtctctgaactttcagtcacctggtattggctcctggggacaacagaggctccatccatccttactgagcagcgatcacgatcagtaccaagcagtagttgctgctgctgctgcttcccaatctggtggttacttaaaacagcaattcttgcaccttcagcaacctatgcagtcccctcaagaacactgcaacctcaacccattattgcagcaacaaattctgcagcaagcaagccagcaacagataattaatcctgatgcccaaaatatccaaacgatgttgagcccaagtgctatacaacagcaactccagcaactacagcaaatgcagcaagttcagaatgatcagaagcagaagattcaaccagatcaaagctaccaagttcctacaagtgcagttctcccaagtccaacatcattaccgagtcatttgcgagaaaaatttggcttctctgatcctaatgcgaattcttcaagcttcatcacctctagcagtagtgataacatgttggattcgagcttccttcagggaagttcgaaagctgtggacttatctcgatttaatcagcctgtagctagtgagcagcagcagcaacaggcatggaagcagaagtttatgggttcacagtcagtgtcttttgggggctcggttttgcataactcacccacaagcaaagatggttctgttgaaaacaaaattggtcgtgatgtgcaaaaccagtccctttttagtccacaagttgactcttcatccctcctgtacaacatggttcctaatctgacttcgaatgtttcggatggcaacttatcaacgatcccttctggatcaacttatctgcagaatgcaatgtatggttgcttggacgactcttctggtttattgcaaaatacaggagagaacgatccagcaaccagaacatttgtgaaggtttacaagtcaggttcggttgggaggtcgttggacatcacccggttctctaattatgctgaacttcgagaagaactgggtcagatgttcggcattaagggtcaattggacgaccctgatagatcaggctggcagcttgtattcgtcgacagggagaatgatgtgcttctccttggagacgacccttgggagtcctttgtgaatagtgtatggtacatcaagatactttcacctgaggatgtgcataagatgggaaagcaaggaaatgatccacggtatctgtcctga

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Protein seq

MSSSSAASIGPPQPPPPPAPPEEEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADVETDEVYAQMTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLVNMLFLTGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSGVASLHDDSNALMWLRGVAGEGGFQSLNFQSPGIGSWGQQRLHPSLLSSDHDQYQAVVAAAAASQSGGYLKQQFLHLQQPMQSPQEHCNLNPLLQQQILQQASQQQIINPDAQNIQTMLSPSAIQQQLQQLQQMQQVQNDQKQKIQPDQSYQVPTSAVLPSPTSLPSHLREKFGFSDPNANSSSFITSSSSDNMLDSSFLQGSSKAVDLSRFNQPVASEQQQQQAWKQKFMGSQSVSFGGSVLHNSPTSKDGSVENKIGRDVQNQSLFSPQVDSSSLLYNMVPNLTSNVSDGNLSTIPSGSTYLQNAMYGCLDDSSGLLQNTGENDPATRTFVKVYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKMGKQGNDPRYLS

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Gene Transcript Chromosome Start End Strand Source
OsLiXu_04g0030600 OsLiXu_04g0030600.04 Chr04 36557558 36564734 - IsoSeq
CDS seq

atgtgcataagatgggaaagcaaggaaatgatccacggtatctgtcctgaagtgagagaacatggtgccatttctgggcttccaggaggattctgcagtgcatggtggcactcttgctctcgacaatgcacgtcgtcagaagtcccaaatttgtatcttgcatgtacgccgtacatgtttccagaactctctgttacctattcggtgcaggccaccggaaccacgaaacctgatatt

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Protein seq

MCIRWESKEMIHGICPEVREHGAISGLPGGFCSAWWHSCSRQCTSSEVPNLYLACTPYMFPELSVTYSVQATGTTKPDI

OsLiXu_04g0030600.04OsLiXu_04g0030600.03OsLiXu_04g0030600.02OsLiXu_04g0030600.01AS36558000 bp36560000 bp36562000 bp36564000 bp36566000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A5 Chr04 36563634 36563753 - OsLiXu_04g0030600.03 OsLiXu_04g0030600.04,OsLiXu_04g0030600.01,OsLiXu_04g0030600.02,OsLiXu_04g0030600.03 All
A5 Chr04 36564259 36564353 - OsLiXu_04g0030600.02 OsLiXu_04g0030600.04,OsLiXu_04g0030600.01,OsLiXu_04g0030600.02 All

Expression

Leaf Root Panicle
FPKM 0.265367 0.943811 5.489696

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0671900 RBH 0.074891 0.856524 17.658920
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g57610 RBH 0.049123 0.558772 3.717318
Nipponbare | IRGSP 1.0 | RAP-db Os04g0671900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0030570 RBH 0.249968 2.847185 23.452919
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0031350 RBH 0.259966 4.613628 15.364350
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0030920 RBH 0.530917 4.833518 51.754696
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0030740 RBH 0.031541 0.467565 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0031000 RBH 0.518877 11.769078 53.850086
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0540500 RBH 12.1175535 9.39988 21.5870075
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0029650 RBH 0.111205 0.909333 6.990660
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0546400 RBH 16.9733265 13.1471335 83.8222925
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0030090 RBH 0.026750 0.156808 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0029930 RBH 0.129084 9.396739 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0030050 RBH 1.413532 6.696929 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0030610 RBH 0.034502 3.753867 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G030090 RBH 0.403516 5.960402 12.287135
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0029790 RBH 0.539278 4.444996 25.963709
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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