Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsAzu_03g0003790 | OGI:03007220 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr03:2741280-2744706 | ||||||||
Gene Symbol | RLCK100, OsRLCK100 | ||||||||||
DNA seq | ACCCGAAGTCGCGAACCAGTCCACTTTGATCCGCGCGGGGCAGCCGAAGAAAGCGCCCAACCCCCGCCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTCTCACTTTTCCAAACCATCAACGTGCCCTTCTATTTCCTTCTTCCCTTCCTCCGAGGGCTTCTGATCCGGAGAGACAGAGATGATTGGGAGCAGAGGCGGCGGCGGTGGCGCGGCGCCGAGGCCGAGGCGGCGGAGCGACCCGGGCGACAGCCGCGACCTCTCCGTGGCCACCACCACGGAGTCGTACAACTCCGAGAGGTCCGTGGGGAGCGGCGGCGGCCGCGGGACCGCCTTCCTCGACGCCTTCCGGTCATGCTTCGTCTCCGGGGAGGCGCAGGCGCGCTCCCCGGAGACCTCGTCGTTGTCCGACGACTTCCATCCCTCACAACAGCGTAAGTCCCAAGAACAAATTAACACGTGAATCCATCCTCCTCCTCCTCTTCTTCTTATCCATAATTTCTCCGCAGCTTTTAGGGTGTTTTTTTTCCTTGAAAAAGTTTCAAATACGATACTTTTGTCGGCCAAACTAGTCCTTTTTTTGTGTGTGTTGAAGATAGTACTACTATCTTGTTCGTCAACGGCTTGCGGTCAACGCGTACGATAGTGTTTGTACGGCGCTGTAATTGGAGAGGATAATCTCATGATATATGCAGAAGTAATATTTGCTCACGTACTAATGGTAGAAAAAATATGTCCAGTGATGACAACATTTCGAGGTATTTTTCTTCGGTTGAACTCGTACGGTGTTTGAGCAAAAAAGGTTTGATTTCTTTTCCTTTTTAAATCCGAGGGTAGTTTGGTTGTATGCGTTTTGTGGCGTGTGTTCATCAGGATGGTGCCTACTCATCTAAGATCTCTTAGTTTAATCATACGTGTGTAACACTCTCGAACTGCTTCTTTATTGTTTTTTGATTTGTCTCCACTTGATCCTGGACCCATCTTGGTCAAAATTCACCTACCATATTCCATACTATAAGCGAACCTATCTATAAGCTATCATTTCTTGATCCCTCTCTGATCAAAGCAGAATTTCAAGCTCTGTAAATTAACATGGATGATCATGCAATCTCCATGCAAAGTATTGCTCTGAACAATAAATATTTCAGTAGCTCATGCCAGAGTTATGATGCTCATATTAATTAATTAATTAATTAATATAGGTGTCGTTGAATTCATTAAAAAATGTGGATGCGAATTTTTGTTTTCACCCTTTTCACTGCAAGAATTATCATCGTTATGTTTTTTCCCCACCTGGTTCAGATACTTATTTCTGTTAATTGTTAAATCATCAGTATCACAGTCGATAAGCTCACAAGGTTCTAGCAGTGGAAGCAATTTTGAGATGCGGAGATCAATGAAAGGACTGTATAATCCAATGCATAGAAATTCTTCAGGAAAGGAGATCCCTGGAAGCACACAGTTCTCCTTACCACAGATCCAGAAAGCAACCAAAAATTTCTCGCCAAACCTGAAGATTGGGCAGGGCGGTTCCGGGACAGTATACAAAGGTCAGCTTAATGACGGCACTCTTATCGCCGTCAAACGGGCCAAGAAGGTTTGCTCTTATTTCTTAATGTTCATTTTGCAGACTGCATTAGCTATTGAATACTGATTACCTTGGTCGCCTTTCTTTGCAGAATGTGTACGACAAGCATATGGGTCGTGAGTTCCGGAACGAGATTGAGACGTTGCAATGTATCGAGCACCTTAATTTGGTAAGGTTTCATGGGTACCTGGAGTTTGGTGGTGAGCAGTTAATCATTGTTGAGTATGTTCCCAATGGAAATCTTCGTGAACACCTTGATTGTAAGAATCCCATGATCCTGGAAATCCCCCCTTTGTGAGAATATAAATCAAGGGTTAATGCTAATTGTATCTTACATGAAGTTAGCCATATGCAGGTGTCAATGGAAAAATTCTTGAATTTTCTCTAAGATTGGATATTTCAATCGATGTGGCTCACGCTGTTACATATCTTCACACCTACTCAGGTATATCTAGTTCTTCTGTAGTTCTATGTGATTTTTTTCTTCAGCAAATTGTATATTTGAAACCTACTGATTGGTGAATCTAGAGAAGATAACCGATAGTTACAGTTGAAATGTTCATGTCCCTAAAAGGAACAAACATTTAGGTAACATGGTGTCCTTAGCTGCTTCTAATATTCTTGATCTGCGTATCCATTTTCGTTTATTCCATCAATTAATTCTCTATGTGAGTAGTAGTAGTTAGTAGCCTGCCTAGATGCCATGCGGAGCTGATCTGCGGATTCCAGAGTAAATGTATGGCATAGCTATACTTCCATTGGAAAAATGCGTCTTTTTATGTAAAAATTGTCCTTGGTTACATGTTCAAACAACCACTTTGCTCACTATCAACTCATCAAGTAGCAACTAAATTCTAACCCTTACAATTTTACCTACAATGCAGATCACCCAGTCATCCACAGGGACATCAAATCGTCAAACATTCTTCTCACAAACAACTGTAGGGCAAAGGTTGCTGACTTTGGATTTGCCAAACTAGCTCCAACTGATGCTAGCCATGTCTCAACCCAAGTAAAAGGAACAGCAGGCTATCTTGATCCTGAATATCTCAGAACATACCAGCTCAATGAGAAGAGTGATGTCTACTCCTTTGGAGTTCTTCTGGTGGAGTTGATAACAGGGAGGCGCCCGATAGAACCAAGGAGAGCTATCGTCGAGCGTGTTACTGCAAAATGGGTTAGTTTTTGTGCTATTCTAATCCTTACCATTGCATCTCAAATCTTCCCCATTACCCAATGAAACATATAGCAAATTTTATACAGGCAATGGAAAAATTTGTTGAGGGAAATGCAATACAAACGCTGGATCCAAATCTAGAAGCAACTGATGCGATCAACCTGGCCGTCGAGAAAACGTACGAGCTGGCTCTGCAGTGCTTAGCTACAACTAAGAGGAACAGACCAAGCATGAGGCGATGCGCTGAGATCCTATGGAGCATACGCAAAGATTTCAGGGAGTTGGATATACCAACCGCATCCCTGAACTGAACTGAGACAGTTCACTTGGAGCAATCAAGAAAAGCTGCACTCCAGTTTGCCTCTCTTCAAAGCGTGGTGGTATGAATCACCCGATTGCTGGATGATGAATTTATTCCTTCAGGATGTGGTCTAAGTAGTTGTGATTGTGAACGGGACTGGTGATCTTCCTAGGAATTGTGTGTTCACCAGCTAGCAACTAGGAACAATTGCATAGCATATTCTGTACATGATAAATTGTTGCTGTGAGCAAGACAGACACAGATACTATATAATGGTATATTGGTTGAGGATGCAATTTTGTTGTGATTATTTAAAACTTCCAAAAGAACACACAAAGTTATATACAAAATCGTAAC
More
|
||||||||||
CDS seq | ATGATTGGGAGCAGAGGCGGCGGCGGTGGCGCGGCGCCGAGGCCGAGGCGGCGGAGCGACCCGGGCGACAGCCGCGACCTCTCCGTGGCCACCACCACGGAGTCGTACAACTCCGAGAGGTCCGTGGGGAGCGGCGGCGGCCGCGGGACCGCCTTCCTCGACGCCTTCCGGTCATGCTTCGTCTCCGGGGAGGCGCAGGCGCGCTCCCCGGAGACCTCGTCGTTGTCCGACGACTTCCATCCCTCACAACAGCTATCACAGTCGATAAGCTCACAAGGTTCTAGCAGTGGAAGCAATTTTGAGATGCGGAGATCAATGAAAGGACTGTATAATCCAATGCATAGAAATTCTTCAGGAAAGGAGATCCCTGGAAGCACACAGTTCTCCTTACCACAGATCCAGAAAGCAACCAAAAATTTCTCGCCAAACCTGAAGATTGGGCAGGGCGGTTCCGGGACAGTATACAAAGGTCAGCTTAATGACGGCACTCTTATCGCCGTCAAACGGGCCAAGAAGAATGTGTACGACAAGCATATGGGTCGTGAGTTCCGGAACGAGATTGAGACGTTGCAATGTATCGAGCACCTTAATTTGGTAAGGTTTCATGGGTACCTGGAGTTTGGTGGTGAGCAGTTAATCATTGTTGAGTATGTTCCCAATGGAAATCTTCGTGAACACCTTGATTGTGTCAATGGAAAAATTCTTGAATTTTCTCTAAGATTGGATATTTCAATCGATGTGGCTCACGCTGTTACATATCTTCACACCTACTCAGATCACCCAGTCATCCACAGGGACATCAAATCGTCAAACATTCTTCTCACAAACAACTGTAGGGCAAAGGTTGCTGACTTTGGATTTGCCAAACTAGCTCCAACTGATGCTAGCCATGTCTCAACCCAAGTAAAAGGAACAGCAGGCTATCTTGATCCTGAATATCTCAGAACATACCAGCTCAATGAGAAGAGTGATGTCTACTCCTTTGGAGTTCTTCTGGTGGAGTTGATAACAGGGAGGCGCCCGATAGAACCAAGGAGAGCTATCGTCGAGCGTGTTACTGCAAAATGGGCAATGGAAAAATTTGTTGAGGGAAATGCAATACAAACGCTGGATCCAAATCTAGAAGCAACTGATGCGATCAACCTGGCCGTCGAGAAAACGTACGAGCTGGCTCTGCAGTGCTTAGCTACAACTAAGAGGAACAGACCAAGCATGAGGCGATGCGCTGAGATCCTATGGAGCATACGCAAAGATTTCAGGGAGTTGGATATACCAACCGCATCCCTGAACTGA
More
|
||||||||||
Protein seq | MIGSRGGGGGAAPRPRRRSDPGDSRDLSVATTTESYNSERSVGSGGGRGTAFLDAFRSCFVSGEAQARSPETSSLSDDFHPSQQLSQSISSQGSSSGSNFEMRRSMKGLYNPMHRNSSGKEIPGSTQFSLPQIQKATKNFSPNLKIGQGGSGTVYKGQLNDGTLIAVKRAKKNVYDKHMGREFRNEIETLQCIEHLNLVRFHGYLEFGGEQLIIVEYVPNGNLREHLDCVNGKILEFSLRLDISIDVAHAVTYLHTYSDHPVIHRDIKSSNILLTNNCRAKVADFGFAKLAPTDASHVSTQVKGTAGYLDPEYLRTYQLNEKSDVYSFGVLLVELITGRRPIEPRRAIVERVTAKWAMEKFVEGNAIQTLDPNLEATDAINLAVEKTYELALQCLATTKRNRPSMRRCAEILWSIRKDFRELDIPTASLN |
||||||||||
Function | Calmodulin-binding receptor-like cytoplasmic kinase 2 [UniProtKB/Swiss-Prot:Q8VZJ9] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsAzu_03g0003790 | OsAzu_03g0003790.01 | Chr03 | 2741280 | 2744706 | + | NAM | ||
CDS seq | ATGATTGGGAGCAGAGGCGGCGGCGGTGGCGCGGCGCCGAGGCCGAGGCGGCGGAGCGACCCGGGCGACAGCCGCGACCTCTCCGTGGCCACCACCACGGAGTCGTACAACTCCGAGAGGTCCGTGGGGAGCGGCGGCGGCCGCGGGACCGCCTTCCTCGACGCCTTCCGGTCATGCTTCGTCTCCGGGGAGGCGCAGGCGCGCTCCCCGGAGACCTCGTCGTTGTCCGACGACTTCCATCCCTCACAACAGCTATCACAGTCGATAAGCTCACAAGGTTCTAGCAGTGGAAGCAATTTTGAGATGCGGAGATCAATGAAAGGACTGTATAATCCAATGCATAGAAATTCTTCAGGAAAGGAGATCCCTGGAAGCACACAGTTCTCCTTACCACAGATCCAGAAAGCAACCAAAAATTTCTCGCCAAACCTGAAGATTGGGCAGGGCGGTTCCGGGACAGTATACAAAGGTCAGCTTAATGACGGCACTCTTATCGCCGTCAAACGGGCCAAGAAGAATGTGTACGACAAGCATATGGGTCGTGAGTTCCGGAACGAGATTGAGACGTTGCAATGTATCGAGCACCTTAATTTGGTAAGGTTTCATGGGTACCTGGAGTTTGGTGGTGAGCAGTTAATCATTGTTGAGTATGTTCCCAATGGAAATCTTCGTGAACACCTTGATTGTGTCAATGGAAAAATTCTTGAATTTTCTCTAAGATTGGATATTTCAATCGATGTGGCTCACGCTGTTACATATCTTCACACCTACTCAGATCACCCAGTCATCCACAGGGACATCAAATCGTCAAACATTCTTCTCACAAACAACTGTAGGGCAAAGGTTGCTGACTTTGGATTTGCCAAACTAGCTCCAACTGATGCTAGCCATGTCTCAACCCAAGTAAAAGGAACAGCAGGCTATCTTGATCCTGAATATCTCAGAACATACCAGCTCAATGAGAAGAGTGATGTCTACTCCTTTGGAGTTCTTCTGGTGGAGTTGATAACAGGGAGGCGCCCGATAGAACCAAGGAGAGCTATCGTCGAGCGTGTTACTGCAAAATGGGCAATGGAAAAATTTGTTGAGGGAAATGCAATACAAACGCTGGATCCAAATCTAGAAGCAACTGATGCGATCAACCTGGCCGTCGAGAAAACGTACGAGCTGGCTCTGCAGTGCTTAGCTACAACTAAGAGGAACAGACCAAGCATGAGGCGATGCGCTGAGATCCTATGGAGCATACGCAAAGATTTCAGGGAGTTGGATATACCAACCGCATCCCTGAACTGA
More
|
|||||||
Protein seq | MIGSRGGGGGAAPRPRRRSDPGDSRDLSVATTTESYNSERSVGSGGGRGTAFLDAFRSCFVSGEAQARSPETSSLSDDFHPSQQLSQSISSQGSSSGSNFEMRRSMKGLYNPMHRNSSGKEIPGSTQFSLPQIQKATKNFSPNLKIGQGGSGTVYKGQLNDGTLIAVKRAKKNVYDKHMGREFRNEIETLQCIEHLNLVRFHGYLEFGGEQLIIVEYVPNGNLREHLDCVNGKILEFSLRLDISIDVAHAVTYLHTYSDHPVIHRDIKSSNILLTNNCRAKVADFGFAKLAPTDASHVSTQVKGTAGYLDPEYLRTYQLNEKSDVYSFGVLLVELITGRRPIEPRRAIVERVTAKWAMEKFVEGNAIQTLDPNLEATDAINLAVEKTYELALQCLATTKRNRPSMRRCAEILWSIRKDFRELDIPTASLN
More
|
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsAzu_03g0003790 | OsAzu_03g0003790.02 | Chr03 | 2741280 | 2744656 | + | IsoSeq | ||
CDS seq | CCCGAAGTCGCGAACCAGTCCACTTTGATCCGCGCGGGGCAGCCGAAGAAAGCGCCCAACCCCCGCCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTCTCACTTTTCCAAACCATCAACGTGCCCTTCTATTTCCTTCTTCCCTTCCTCCGAGGGCTTCTGATCCGGAGAGACAGAGATGATTGGGAGCAGAGGCGGCGGCGGTGGCGCGGCGCCGAGGCCGAGGCGGCGGAGCGACCCGGGCGACAGCCGCGACCTCTCCGTGGCCACCACCACGGAGTCGTACAACTCCGAGAGGTCCGTGGGGAGCGGCGGCGGCCGCGGGACCGCCTTCCTCGACGCCTTCCGGTCATGCTTCGTCTCCGGGGAGGCGCAGGCGCGCTCCCCGGAGACCTCGTCGTTGTCCGACGACTTCCATCCCTCACAACAGCTATCACAGTCGATAAGCTCACAAGG
More
|
|||||||
Protein seq | PEVANQSTLIRAGQPKKAPNPRPFLLLLLLLLLPLSLFQTINVPFYFLLPFLRGLLIRRDRDDWEQRRRRWRGAEAEAAERPGRQPRPLRGHHHGVVQLREVRGERRRPRDRLPRRLPVMLRLRGGAGALPGDLVVVRRLPSLTTAITVDKLTR |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
A3 | Chr03 | 2743131 | 2743227 | + | OsAzu_03g0003790.02 | OsAzu_03g0003790.01,OsAzu_03g0003790.02 | All |
Expression
Leaf | Root | Panicle | |
FPKM | 0.794509 | 7.923937 | 0.869929 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0148700 | RBH | 1.752524 | 1.538305 | 1.038973 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g05470 | RBH | 0.623241 | 1.014616 | 0.262277 |
Nipponbare | IRGSP 1.0 | RAP-db | Os03g0148700 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0012390 | RBH | 0.383189 | 14.262184 | 5.070402 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0003710 | RBH | 0.218511 | 1.437490 | 0.545078 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0003750 | RBH | 1.937923 | 8.913705 | 1.119246 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0003690 | RBH | 0.082539 | 0.247853 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0003790 | RBH | 1.203275 | 3.888621 | 3.780069 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0043500 | RBH | 3.82478 | 10.745201 | 4.8385055 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0003680 | RBH | 0.419433 | 0.432298 | 0.138555 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0043800 | RBH | 4.406625 | 29.381708 | 0.9203065 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0003790 | RBH | 0.072080 | 0.070714 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0003760 | RBH | 0.0 | 5.066021 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0003730 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0003790 | RBH | 0.575119 | 0.230788 | 0.000000 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0003770 | RBH | 0.043098 | 7.437175 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G003740 | RBH | 1.072612 | 2.744936 | 0.128454 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0003600 | RBH | 1.863938 | 22.272207 | 2.130201 |