Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsAzu_02g0026840 OGI:02073280 | 16/16 Azucena | AzucenaRS1 | Gramene(+IsoSeq) Chr02:26374364-26376109
Gene Symbol -
DNA seq

TCGCTGCACGCTCCCTGATCAGCTACGCCCATGCATCTGCTCAGCGGCTGCGTCGTCGCCACGGCCGTCGTGCTCGTCCTCATCAGCCTCGGCGCCGCGCCACCGGCGGCCGTCGACGCGGCGACGGGCACGTTCATCTACGCGGGCTGCTCGCCGTCCAAGTACGAGCCCAACACCGCATTCCAGAGCAACCTCAACTCGCTCCTCTCCTCCATCGCCTCCACCGCGTCCTCGGGCGCCGCCTACAACAGCTTCACCGCCGGCGGTGGCGCCGGGCCGGACCCGGCGGCCGGCACGGCCGCGTACGGGCTGTACCAGTGCCGCGGCGACCTGAGCCCCGGCGACTGCGTGGCGTGCGTGCGGCAGACGGTGGCGCGGCTGGGCGCCGTGTGCGCCAACGCGTACGCCGCGTCGCTGCAGGTGGACGGCTGCTACGTGCGGTACGACGCCGCGGACTTCATCGGCCGCGCCGACACCACCACGGCGTACCGCAAGTGCAGCTCCAGCACGAGCCGCGACGGCGCGTTCCTGAGCAGCCGCGACGGCGTCCTCGGGGAGCTGCAGGCGGCGGCCGGGTACAAGCTGAGCACCTCCGGCACGGTGCAGGGGGTGGCGCAGTGCCTCGGCGACGTCCCGGCGAACGACTGCACCGCCTGCCTGGCCGAGGCAGTGGGGCAGCTCAAGGGCGCGTGCGGCACGGCGCTCGCCGCCGACGTCTACCTGGCGCAGTGCTACGTCAGATACTGGGCAAATGGTTACTACTTCCGCCCTAATTCAGGTGTGCGACATTGTAATTAACCAACCAAGCATGTCACGTACTACTAATCGCGTGCACGTTCTAACTATTCATTTCTTCCTATAAGTTGGAATAATAGTTAACCTTTCTTATAATTTATATCGAACATTTTTTTTAGTATTTGGAGAAGTTTGAAGTGAACGAATAATTCGAATATTTAGTATTTCAAAAAGCAGGGGCGATCCAAATCTTAAAAGAGAACCTGTGTGTAAGGGCCCTACCTAATGGGCAAAATGGTAGTAGTTGGCTAGATAGTGATCACTAGTGAGTGAGGTGAGGTCTCTATGGAAGTGAGAATAAGATTCCAAACTGGTAAACTTCCAAAGCTGATAAAGAGGACACGAAGAATATATTCACCGGCATAAACTTTTCGACCCTTTTGGATCGATGTTAATTAAGTATTTAACACTCAAGACTTGATGAGGCGTTCTAGCTCATTTAGTCGTCTAGCTTAGCTCTTTTTAGCCGCTATGGAGAAAAGCTAGCGCGCGTTTGCTCCCCGTGCGTGCGTGCGGATCGCTTTGCATATATATGGTTGTTAATTAGTCATCATCTCCCTTTGGCTTGGTGACAGATAACTCTGGAGACGATGTTGGGAGGACTGTGGCGATAATAATCGGTATCTTGGCTGGACTGGCACTCCTCGTGGTGTTTATTTCTTTCCTCAGGAAAGCATGTAAGTTCTCTGAATTAAGTCCACAGAGAGATACACTTTAATATAGCCAAGTAGCTAACCAATTTCCCAATGCACTATACGCAGGTTAGCAGCTGTCGGCGTAGCCAGCTTGGGTTGAGGATGTGAACAACAGGCGATCGAACTCCATTCACGGCATCGCATTCATTTTGTTAGTTATAGCAGAGATTCACTGATGCTCTACTTGCCTGAGATGCACTGTCTTGTTTCAGTCGGTCTGCAGTCTGCAAAGAAAAAGAGGTTGATCTGCGTGTAA

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CDS seq

ATGCATCTGCTCAGCGGCTGCGTCGTCGCCACGGCCGTCGTGCTCGTCCTCATCAGCCTCGGCGCCGCGCCACCGGCGGCCGTCGACGCGGCGACGGGCACGTTCATCTACGCGGGCTGCTCGCCGTCCAAGTACGAGCCCAACACCGCATTCCAGAGCAACCTCAACTCGCTCCTCTCCTCCATCGCCTCCACCGCGTCCTCGGGCGCCGCCTACAACAGCTTCACCGCCGGCGGTGGCGCCGGGCCGGACCCGGCGGCCGGCACGGCCGCGTACGGGCTGTACCAGTGCCGCGGCGACCTGAGCCCCGGCGACTGCGTGGCGTGCGTGCGGCAGACGGTGGCGCGGCTGGGCGCCGTGTGCGCCAACGCGTACGCCGCGTCGCTGCAGGTGGACGGCTGCTACGTGCGGTACGACGCCGCGGACTTCATCGGCCGCGCCGACACCACCACGGCGTACCGCAAGTGCAGCTCCAGCACGAGCCGCGACGGCGCGTTCCTGAGCAGCCGCGACGGCGTCCTCGGGGAGCTGCAGGCGGCGGCCGGGTACAAGCTGAGCACCTCCGGCACGGTGCAGGGGGTGGCGCAGTGCCTCGGCGACGTCCCGGCGAACGACTGCACCGCCTGCCTGGCCGAGGCAGTGGGGCAGCTCAAGGGCGCGTGCGGCACGGCGCTCGCCGCCGACGTCTACCTGGCGCAGTGCTACGTCAGATACTGGGCAAATGGTTACTACTTCCGCCCTAATTCAGATAACTCTGGAGACGATGTTGGGAGGACTGTGGCGATAATAATCGGTATCTTGGCTGGACTGGCACTCCTCGTGGTGTTTATTTCTTTCCTCAGGAAAGCATGTTAG

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Protein seq

MHLLSGCVVATAVVLVLISLGAAPPAAVDAATGTFIYAGCSPSKYEPNTAFQSNLNSLLSSIASTASSGAAYNSFTAGGGAGPDPAAGTAAYGLYQCRGDLSPGDCVACVRQTVARLGAVCANAYAASLQVDGCYVRYDAADFIGRADTTTAYRKCSSSTSRDGAFLSSRDGVLGELQAAAGYKLSTSGTVQGVAQCLGDVPANDCTACLAEAVGQLKGACGTALAADVYLAQCYVRYWANGYYFRPNSDNSGDDVGRTVAIIIGILAGLALLVVFISFLRKAC

Function Plasmodesmata-located protein 8 [UniProtKB/Swiss-Prot:Q6NKQ9]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsAzu_02g0026840 OsAzu_02g0026840.01 Chr02 26374364 26376109 + NAM
CDS seq

ATGCATCTGCTCAGCGGCTGCGTCGTCGCCACGGCCGTCGTGCTCGTCCTCATCAGCCTCGGCGCCGCGCCACCGGCGGCCGTCGACGCGGCGACGGGCACGTTCATCTACGCGGGCTGCTCGCCGTCCAAGTACGAGCCCAACACCGCATTCCAGAGCAACCTCAACTCGCTCCTCTCCTCCATCGCCTCCACCGCGTCCTCGGGCGCCGCCTACAACAGCTTCACCGCCGGCGGTGGCGCCGGGCCGGACCCGGCGGCCGGCACGGCCGCGTACGGGCTGTACCAGTGCCGCGGCGACCTGAGCCCCGGCGACTGCGTGGCGTGCGTGCGGCAGACGGTGGCGCGGCTGGGCGCCGTGTGCGCCAACGCGTACGCCGCGTCGCTGCAGGTGGACGGCTGCTACGTGCGGTACGACGCCGCGGACTTCATCGGCCGCGCCGACACCACCACGGCGTACCGCAAGTGCAGCTCCAGCACGAGCCGCGACGGCGCGTTCCTGAGCAGCCGCGACGGCGTCCTCGGGGAGCTGCAGGCGGCGGCCGGGTACAAGCTGAGCACCTCCGGCACGGTGCAGGGGGTGGCGCAGTGCCTCGGCGACGTCCCGGCGAACGACTGCACCGCCTGCCTGGCCGAGGCAGTGGGGCAGCTCAAGGGCGCGTGCGGCACGGCGCTCGCCGCCGACGTCTACCTGGCGCAGTGCTACGTCAGATACTGGGCAAATGGTTACTACTTCCGCCCTAATTCAGATAACTCTGGAGACGATGTTGGGAGGACTGTGGCGATAATAATCGGTATCTTGGCTGGACTGGCACTCCTCGTGGTGTTTATTTCTTTCCTCAGGAAAGCATGTTAG

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Protein seq

MHLLSGCVVATAVVLVLISLGAAPPAAVDAATGTFIYAGCSPSKYEPNTAFQSNLNSLLSSIASTASSGAAYNSFTAGGGAGPDPAAGTAAYGLYQCRGDLSPGDCVACVRQTVARLGAVCANAYAASLQVDGCYVRYDAADFIGRADTTTAYRKCSSSTSRDGAFLSSRDGVLGELQAAAGYKLSTSGTVQGVAQCLGDVPANDCTACLAEAVGQLKGACGTALAADVYLAQCYVRYWANGYYFRPNSDNSGDDVGRTVAIIIGILAGLALLVVFISFLRKAC

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0643900 RBH 0.139726 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g43000 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os02g0643900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0021310 RBH 0.000000 8.462649 3.307453
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0026950 RBH 0.000000 0.000000 0.000000
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0026820 RBH 0.0 0.0 0.577746
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0026400 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0026500 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0421200 RBH 1.085959 2.7064285 0.0771755
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0026310 RBH 0.000000 0.0 0.059600
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0449100 RBH 0.832637 3.002017 0.3347125
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0026670 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0026330 RBH 0.0 2.659364 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0026700 RBH 0.000000 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0026510 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0026200 RBH 0.000000 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G026820 RBH 0.0 0.0 0.137049
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0026550 RBH 0.0 0.000000 0.000000
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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