Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g43000 | OGI:02073280 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:25885022-25886770 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCGCTGCACGCTCCCTGATCAGCTACGCCCATGCATCTACTCAGCGGCTGCGTCGTCGCCACGGCCGTCGTGCTCGTCCTCATCAGCCTCGGCGCCGCGCCACCGGCGGCCGTCGACGCGGCGACGGCCACGTTCATCTACGCGGGCTGCTCGCCGTCCAAGTACGAGCCCAACACCGCATTCCAGAGCAACCTCAACTCGCTCCTCTCCTCCATCGCCTCCACCGCGTCCTCGGGCGCCGCCTACAACAGCTTCACCGCCGGCGGTGGCGCCGGGCCGGACCCGGCGGCCGGCACGGCCGCGTACGGGCTGTACCAGTGCCGCGGCGACCTGAGCCCCGGCGACTGCGTGGCGTGCGTGCGGCAGACGGTGGCGCGGCTGGGCGCCGTGTGCGCCAACGCGTACGCCGCGTCGCTGCAGGTGGACGGCTGCTACGTGCGGTACGACGCCGCGGACTTCATCGGCCGCGCCGACACCACCACGGCGTACCGCAAGTGCAGCTCCAGCACGAGCCGCGACGGCGCGTTCCTGAGCAGCCGCGACGGCGTCCTCGGGGAGCTGCAGGCGGCGGCCGGGTACAAGCTGAGCACCTCCGGCACGGTGCAGGGGGTGGCGCAGTGCCTCGGCGACGTCCCGGCGAACGACTGCACCGCCTGCCTGGCCGAGGCAGTGGGGCAGCTCAAGGGCGCGTGCGGCACGGCGCTCGCCGCCGACGTCTACCTGGCGCAGTGCTACGTCAGATACTGGGCAAATGGTTACTACTTCCGCCCTAATTCAGGTATGCGACATTGTAATTAACCAACCAAGCATGTCACGTACTACTAATCGCGTGCACGTTCTAACTATTCATTTCTTCCTATAAGTTGGAATAATAGTTAACCTTTCTTATTATAATTTATATCGAACATTTTTTTTAGTATTTGGAGAAGTTTGAAGTGCACGAATAATTCGAATATTTAGTATTTCAAAAAGCAGGGGCGATCCAAATCTTAAAAGAGAACCTGTGTGTAAGGGCCCTACCTAATGGGCAAAATGGTAGTAGTTGGCTAGATAGTGATCACTAGTGAGTGAGGTGAGGTCTCTATGGAAGTGAGAATAAGATTCCAAACTGGTAAACTTCCAAAGCTGATAAAGAGGACACGAAGAATATATTCACCGGCATAAACTTTTCGACCCTTTTGGATCGATGTTAATTAAGTATTTAACACTCAAGACTTGATGAGGCGTTCTAGCTCATTTAGTCGTCTAGCTTAGCGCTTTTTAGCCGCTATGGAGAAAAGCTAGCGCGCGTTTGCTCCCCGTGCGTGCGTGCGGATCGCTTTGCATATATATGGTTGTTAATTAGTCATCATCTCCCTTTGGCTTGGTGACAGATAACTCTGGAGACGATGTTGGGAGGACTGTGGCGATAATAATCGGTATCTTGGCTGGACTGGCACTCCTCGTGGTGTTTATTTCTTTCCTCAGGAAAGCATGTAAGTTCTCTGAATTATGTCCACAGAGAGATACACTTTAATATAGCCAAGTAGCTAACCAATTTTCCAATGCACTATACGCAGGTTAGCAGCTGTCGGCGTAGCCAGCTTGGGTTGAGGACGTGAACAACAGGCGATCGAACTCCATTCACGGCATCGCATTCATTTTGTTAGTTATAGCAGAGATTCACTGATGCTCTACTTGCCTGAGATGCACTGTCTTGTTTCAGTCGGTCTGCAGTCTGCAAAGAAAAAGAGGTTGATCTGCGTGTAA
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| CDS seq | ATGCATCTACTCAGCGGCTGCGTCGTCGCCACGGCCGTCGTGCTCGTCCTCATCAGCCTCGGCGCCGCGCCACCGGCGGCCGTCGACGCGGCGACGGCCACGTTCATCTACGCGGGCTGCTCGCCGTCCAAGTACGAGCCCAACACCGCATTCCAGAGCAACCTCAACTCGCTCCTCTCCTCCATCGCCTCCACCGCGTCCTCGGGCGCCGCCTACAACAGCTTCACCGCCGGCGGTGGCGCCGGGCCGGACCCGGCGGCCGGCACGGCCGCGTACGGGCTGTACCAGTGCCGCGGCGACCTGAGCCCCGGCGACTGCGTGGCGTGCGTGCGGCAGACGGTGGCGCGGCTGGGCGCCGTGTGCGCCAACGCGTACGCCGCGTCGCTGCAGGTGGACGGCTGCTACGTGCGGTACGACGCCGCGGACTTCATCGGCCGCGCCGACACCACCACGGCGTACCGCAAGTGCAGCTCCAGCACGAGCCGCGACGGCGCGTTCCTGAGCAGCCGCGACGGCGTCCTCGGGGAGCTGCAGGCGGCGGCCGGGTACAAGCTGAGCACCTCCGGCACGGTGCAGGGGGTGGCGCAGTGCCTCGGCGACGTCCCGGCGAACGACTGCACCGCCTGCCTGGCCGAGGCAGTGGGGCAGCTCAAGGGCGCGTGCGGCACGGCGCTCGCCGCCGACGTCTACCTGGCGCAGTGCTACGTCAGATACTGGGCAAATGGTTACTACTTCCGCCCTAATTCAGATAACTCTGGAGACGATGTTGGGAGGACTGTGGCGATAATAATCGGTATCTTGGCTGGACTGGCACTCCTCGTGGTGTTTATTTCTTTCCTCAGGAAAGCATTCGGTCTGCAGTCTGCAAAGAAAAAGAGGTTGATCTGCGTGTAA
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| Protein seq | MHLLSGCVVATAVVLVLISLGAAPPAAVDAATATFIYAGCSPSKYEPNTAFQSNLNSLLSSIASTASSGAAYNSFTAGGGAGPDPAAGTAAYGLYQCRGDLSPGDCVACVRQTVARLGAVCANAYAASLQVDGCYVRYDAADFIGRADTTTAYRKCSSSTSRDGAFLSSRDGVLGELQAAAGYKLSTSGTVQGVAQCLGDVPANDCTACLAEAVGQLKGACGTALAADVYLAQCYVRYWANGYYFRPNSDNSGDDVGRTVAIIIGILAGLALLVVFISFLRKAFGLQSAKKKRLICV |
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| Function | Plasmodesmata-located protein 8 [UniProtKB/Swiss-Prot:Q6NKQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g43000 | LOC_Os02g43000.1 | Chr02 | 25885022 | 25886770 | + | MSU_osa1r7 | ||
| CDS seq | ATGCATCTACTCAGCGGCTGCGTCGTCGCCACGGCCGTCGTGCTCGTCCTCATCAGCCTCGGCGCCGCGCCACCGGCGGCCGTCGACGCGGCGACGGCCACGTTCATCTACGCGGGCTGCTCGCCGTCCAAGTACGAGCCCAACACCGCATTCCAGAGCAACCTCAACTCGCTCCTCTCCTCCATCGCCTCCACCGCGTCCTCGGGCGCCGCCTACAACAGCTTCACCGCCGGCGGTGGCGCCGGGCCGGACCCGGCGGCCGGCACGGCCGCGTACGGGCTGTACCAGTGCCGCGGCGACCTGAGCCCCGGCGACTGCGTGGCGTGCGTGCGGCAGACGGTGGCGCGGCTGGGCGCCGTGTGCGCCAACGCGTACGCCGCGTCGCTGCAGGTGGACGGCTGCTACGTGCGGTACGACGCCGCGGACTTCATCGGCCGCGCCGACACCACCACGGCGTACCGCAAGTGCAGCTCCAGCACGAGCCGCGACGGCGCGTTCCTGAGCAGCCGCGACGGCGTCCTCGGGGAGCTGCAGGCGGCGGCCGGGTACAAGCTGAGCACCTCCGGCACGGTGCAGGGGGTGGCGCAGTGCCTCGGCGACGTCCCGGCGAACGACTGCACCGCCTGCCTGGCCGAGGCAGTGGGGCAGCTCAAGGGCGCGTGCGGCACGGCGCTCGCCGCCGACGTCTACCTGGCGCAGTGCTACGTCAGATACTGGGCAAATGGTTACTACTTCCGCCCTAATTCAGATAACTCTGGAGACGATGTTGGGAGGACTGTGGCGATAATAATCGGTATCTTGGCTGGACTGGCACTCCTCGTGGTGTTTATTTCTTTCCTCAGGAAAGCATTCGGTCTGCAGTCTGCAAAGAAAAAGAGGTTGATCTGCGTGTAA
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| Protein seq | MHLLSGCVVATAVVLVLISLGAAPPAAVDAATATFIYAGCSPSKYEPNTAFQSNLNSLLSSIASTASSGAAYNSFTAGGGAGPDPAAGTAAYGLYQCRGDLSPGDCVACVRQTVARLGAVCANAYAASLQVDGCYVRYDAADFIGRADTTTAYRKCSSSTSRDGAFLSSRDGVLGELQAAAGYKLSTSGTVQGVAQCLGDVPANDCTACLAEAVGQLKGACGTALAADVYLAQCYVRYWANGYYFRPNSDNSGDDVGRTVAIIIGILAGLALLVVFISFLRKAFGLQSAKKKRLICV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0643900 | RBH | 0.139726 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g45460 | RBH | 0.428862 | 0.665935 | 0.330780 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0643900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0026840 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026950 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0026820 | RBH | 0.0 | 0.0 | 0.577746 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026400 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0026500 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0421200 | RBH | 1.085959 | 2.7064285 | 0.0771755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0026310 | RBH | 0.000000 | 0.0 | 0.059600 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0449100 | RBH | 0.832637 | 3.002017 | 0.3347125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026670 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0026330 | RBH | 0.0 | 2.659364 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0026700 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0026510 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0026200 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G026820 | RBH | 0.0 | 0.0 | 0.137049 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026550 | RBH | 0.0 | 0.000000 | 0.000000 |
