Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_01g0047970 | OGI:01124690 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr01:43146408-43148042 | ||||||||
| Gene Symbol | prx23 | ||||||||||
| DNA seq | CGAGCTTACACTTAGAGCAGTAGAAATACAATTACGGGAGGAAATGGCTTCTGCGACGACGCTGGTAATGCTGGTAGCTGCCGTCGCTTGCCTGTGCGCTCCGGCGGCTGCCGGCGACGGCAACGCCGACGCGACGCGGCAGCCGCCGGTGGTGAGTGGCCTGTCGTTCGACTTCTACAGGAAGAGCTGCCCCAAGGCGGAGTCCGTCGTGAGGAAGTTCGTCAGGGACGCCGTCCGCAAGGACATCGGCCTCGCCGCCGGCCTGCTCCGGCTCCACTTCCACGACTGCTTCGTGCAGGGCTGCGACGCCTCCGTGCTGCTCGACGGCTCCGCCACCGGCCCCGGCGAGCGGCAGGCGCCGCCCAACCTCACGCTGCGCCCGTCAGCGTTCAAGGCCGTCAACGACATCCGCGACCGCCTTGAGAAGGCGTGCGGCGCCTCCGTCGTCTCCTGCTCCGACATCCTCGCTCTCGCCGCCCGCGACTCTGTCGTCGCGGTAAACGTATAAATTTAGAGTCTTACAGTTTGCATGATCGTGAGGGCGTGTTGTGTATAATCGAAAATTATTTATACTTTTTAAGTAAATTTTATAGAACTATATATACTTGATCAAATTATTGTAAAAATACAGATTTAAGATAATGTATTAGAAATATATATTTAACAATAAATTTATCATAAAAACTATAGATTTAATAATTAATTAGCACAAAATTATAGCTTATAGGGTTTAAATTCTTAGCATTTATGTTATGCCTGAGTTATAAATATCCAAGTTTTTTACTAAATCAATATTTATGAAATTTCACAATTTATAGTTTTATGATAATTTAAAGTATCTGAAATTTACTTTTACTATTATTATTTTTGACGTGTAGTCAGGAGGGCCGGAGTACAAGGTGCCACTGGGGCGGCGAGACAGCGCCGAGTTCGCGTCGCAGCAGGACGTGCTGAGCGGGCTGCCGCCGCCGACCGCCGCCGTGCCGGCGCTGCTGGACGCCCTGGCCAAGATCAAGCTCGACGCCACCGACCTGGTGGCGCTCTCCGGCGGCCACACCGTGGGCCTCGCGCACTGCAGCTCCTTCGAGGGCCGCCTCTTCCCGCACCGGGACCCGGCCATGAACGCCACCTTCGCCGGCCGGCTCCGGCGAACCTGCCCGGCGGCGGGCACCGACCGCCGGACGCCGAACGACGTCCGGACGCCCAACGTGTTCGACAACATGTACTACGTCAACCTTGTCAACCGGGAGGGGCTCTTCACCTCCGACCAGGACCTCTTCGCCGACGCCGCCACCAAGCCCATCGTCGAAAAGTTCGCCGCCGACGAGAAGGCATTCTTCGACCAGTTCGCCGTGTCCATGGTGAAGATGGGGCAGATCAGCGTGCTCACCGGCTCGCAGGGCCAGGTTCGCCGGAACTGCTCAGCCAGAAACCCCGGCACCGTCGCCGCCGGCGACCTCCCGTGGTCCGTCCTCGAGGTTGCAGACAGCTTCGTTTTCTAGATAATAAAATAATACTCTGGGACTACTACTAGTTAGCCTGGATTAGTGGATTAGCAGCTGTATGCTTTCAACTTATGGCCTTGCTTGTATGCAATCTTAGTGAAATAAATTCAGTGATGAGGGCAAGTGATGG
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| CDS seq | ATGGCTTCTGCGACGACGCTGGTAATGCTGGTAGCTGCCGTCGCTTGCCTGTGCGCTCCGGCGGCTGCCGGCGACGGCAACGCCGACGCGACGCGGCAGCCGCCGGTGGTGAGTGGCCTGTCGTTCGACTTCTACAGGAAGAGCTGCCCCAAGGCGGAGTCCGTCGTGAGGAAGTTCGTCAGGGACGCCCAGGACGTGCTGAGCGGGCTGCCGCCGCCGACCGCCGCCGTGCCGGCGCTGCTGGACGCCCTGGCCAAGATCAAGCTCGACGCCACCGACCTGGTGGCGCTCTCCGGCGGCCACACCGTGGGCCTCGCGCACTGCAGCTCCTTCGAGGGCCGCCTCTTCCCGCACCGGGACCCGGCCATGAACGCCACCTTCGCCGGCCGGCTCCGGCGAACCTGCCCGGCGGCGGGCACCGACCGCCGGACGCCGAACGACGTCCGGACGCCCAACGTGTTCGACAACATGTACTACGTCAACCTTGTCAACCGGGAGGGGCTCTTCACCTCCGACCAGGACCTCTTCGCCGACGCCGCCACCAAGCCCATCGTCGAAAAGTTCGCCGCCGACGAGAAGGCATTCTTCGACCAGTTCGCCGTGTCCATGGTGAAGATGGGGCAGATCAGCGTGCTCACCGGCTCGCAGGGCCAGGTTCGCCGGAACTGCTCAGCCAGAAACCCCGGCACCGTCGCCGCCGGCGACCTCCCGTGGTCCGTCCTCGAGGTTGCAGACAGCTTCGTTTTCTAG
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| Protein seq | MASATTLVMLVAAVACLCAPAAAGDGNADATRQPPVVSGLSFDFYRKSCPKAESVVRKFVRDAQDVLSGLPPPTAAVPALLDALAKIKLDATDLVALSGGHTVGLAHCSSFEGRLFPHRDPAMNATFAGRLRRTCPAAGTDRRTPNDVRTPNVFDNMYYVNLVNREGLFTSDQDLFADAATKPIVEKFAADEKAFFDQFAVSMVKMGQISVLTGSQGQVRRNCSARNPGTVAAGDLPWSVLEVADSFVF |
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| Function | Cationic peroxidase SPC4 [UniProtKB/Swiss-Prot:P84516] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_01g0047970 | OsAzu_01g0047970.01 | Chr01 | 43146451 | 43148018 | + | NAM | ||
| CDS seq | ATGGCTTCTGCGACGACGCTGGTAATGCTGGTAGCTGCCGTCGCTTGCCTGTGCGCTCCGGCGGCTGCCGGCGACGGCAACGCCGACGCGACGCGGCAGCCGCCGGTGGTGAGTGGCCTGTCGTTCGACTTCTACAGGAAGAGCTGCCCCAAGGCGGAGTCCGTCGTGAGGAAGTTCGTCAGGGACGCCCAGGACGTGCTGAGCGGGCTGCCGCCGCCGACCGCCGCCGTGCCGGCGCTGCTGGACGCCCTGGCCAAGATCAAGCTCGACGCCACCGACCTGGTGGCGCTCTCCGGCGGCCACACCGTGGGCCTCGCGCACTGCAGCTCCTTCGAGGGCCGCCTCTTCCCGCACCGGGACCCGGCCATGAACGCCACCTTCGCCGGCCGGCTCCGGCGAACCTGCCCGGCGGCGGGCACCGACCGCCGGACGCCGAACGACGTCCGGACGCCCAACGTGTTCGACAACATGTACTACGTCAACCTTGTCAACCGGGAGGGGCTCTTCACCTCCGACCAGGACCTCTTCGCCGACGCCGCCACCAAGCCCATCGTCGAAAAGTTCGCCGCCGACGAGAAGGCATTCTTCGACCAGTTCGCCGTGTCCATGGTGAAGATGGGGCAGATCAGCGTGCTCACCGGCTCGCAGGGCCAGGTTCGCCGGAACTGCTCAGCCAGAAACCCCGGCACCGTCGCCGCCGGCGACCTCCCGTGGTCCGTCCTCGAGGTTGCAGACAGCTTCGTTTTCTAG
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| Protein seq | MASATTLVMLVAAVACLCAPAAAGDGNADATRQPPVVSGLSFDFYRKSCPKAESVVRKFVRDAQDVLSGLPPPTAAVPALLDALAKIKLDATDLVALSGGHTVGLAHCSSFEGRLFPHRDPAMNATFAGRLRRTCPAAGTDRRTPNDVRTPNVFDNMYYVNLVNREGLFTSDQDLFADAATKPIVEKFAADEKAFFDQFAVSMVKMGQISVLTGSQGQVRRNCSARNPGTVAAGDLPWSVLEVADSFVF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_01g0047970 | OsAzu_01g0047970.02 | Chr01 | 43146408 | 43148042 | + | IsoSeq | ||
| CDS seq | ATGCTTTCAACTTATGGCCTTGCTTGTATGCAA |
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| Protein seq | MLSTYGLACMQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 1.840126 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0962700 | SBH | 3.963992 | 2.100241 | 2.347865 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g73220 | RBH | 0.129798 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0962700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0047450 | SBH | 0.0 | 0.0 | 0.444657 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0047940 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0047350 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0046970 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0698100 | RBH | 0.2840605 | 0.193113 | 0.3553075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0046430 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0697500 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0046990 | RBH | 0.099767 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0046890 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0047180 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0047140 | RBH | 0.315611 | 0.000000 | 0.157462 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046900 | SBH | 0.077370 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G047210 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0046960 | SBH | 0.0 | 0.0 | 0.0 |
