Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_01g0018040 | OGI:01050820 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr01:16488101-16490150 | ||||||||
| Gene Symbol | SPARK6, OsSPARK6 | ||||||||||
| DNA seq | GCATTTTCTTCTTCCCCAACCTCCACACTTTCGTCCTCCCCCCTTTCTCCTCCCCCTTCCCCAACCCACACCCACACACACTTCCAAGCTAGCCGTCTCCAACAACCCTCCCCCCACCATCCTCCCCATGTCCTCCTCCCTCCCCTCTCCCCTCCTCTTCCTCCTCCTCCTCCTCCCCTTCCCCGCCGCGGTTCGTTCCCAGCCGGCGGCGGCCCCCGCGCCGCAGCAGCAATGCCCGCTCAACTTCACCGCGCTCCGGCCCTTCCTGGCCCAGCCGCTCCCGCCCGACGACTCCGCGCGCTGCCTCCTCGCCGTGCAGTCCGTTCGCCTCCTCCTCGCGCTCCACCTCGCCGCCACAGGATCCTTCGTCCTCCCGGCTAACTCCTCCTGCCTCCCGCCGCTCCGCGCCGAGCTCCCCTTCGCGCTCCCGTCGCCCTCCGCCTGCGGCCTCCAGGGGCTCGACGCGCTCCTCGCGTCCCCGGGGTGCGCCAACGTTTCCACTCTCGGGGACTTCGACGCCGCCGTGCCGCCGTCCTCGCGGGCGGACATGAACGCCAGCTGCAACCGGGACCTCACCCCGGTCCCCGACTGTACCTCCTGCACCACCTCGCTCAGCAAGGCCGCGGCGGCCTACCTCCTCCCGGGCTCCCCCAACGACGGTGGGAACAACGTCACTGGCTGCGTCCAGTACCCCTTCATCTACGCCGGCGCCGCCGCCAGCCCGCGCGGCGCCGACGACCCAGCCACGGCCAACTGCCTCTACCTCCTCAAGGTGAACTCTGCTTCCAAGGCCAGCTCCAGCGTCCCTGGTTGGGTCTACGGCGTCGTGTTTGGCTGCGTCGCCATGGTTCTGCTCGTTGCCGCGGCGGCTGCCTCTTGGTTCCTGGTGCGGCGGCGGCGGAGGCGGGCCGCCGCCGCGGCGCTGGCCAAGGCCGCGGCCGACAGCAGGAGCAAGCGCTCGCAGGCGATGGAGTCAATCAGCGCGAGCACCACGCTAGTCCAGTTCACCTACGACGAGATCAAGGCGGCCACTGGGGGATTCGCAAGGGAGAGCATCATTGGCCGCGGTGGGTTCGGCAATGTGTACAAGGGCGTGCTCCCGGACGGCGCGGAGGTGGCCGTGAAGCGGTTCAAGAACTGCTCCGCGGCTGGGGATGCCGCGTTCGCGCACGAGGTGGAGGTCGTGGCCAGCGTCCGCCATGTCAACCTGGTCGCCATCCGTGGGTACTGCATCGCTACCACTGAGAGAGAAGGCCACCAGCGAATGATTGTGTGTGACCTGATGCACAATGGCAGCCTGCACGATCACCTGTTCGGTGCCGGGGAATGCCAGATGACGTGGCCGGTGAGGCAGAGGATTGCCATAGGGATGGCGCGCGGCCTGGCCTATCTGCACCGCGGGGCGCAGCCCGCCATCATTCACAGGGATATCAAAGCGAGCAATATCTTGCTTGATGACGACTTTGAGGCCATGGTGGCTGATTTCGGATTGGCCAAGTTTGCACCGGAAGGGATGACGCATGTGAGCACAAGGGTTGCTGGCACGCTGGGTTATGTCGCTCCAGAGTATGCACTGTATGGCCAATTGACTGAGAAGAGTGATGTCTATAGCTTCGGAGTTGTACTTCTTGAGCTTCTAAGTGGAAAGAGGGCATTTATCTCTCTTGGTGAAGGCCAGAACTTTGTGCTCAGTGAATGGGCTTGGTTATTGGTCCGGAGGGGGAAGACAGTGGATGTGATCCAAGAAGGAATGGTTGAGCCTGGTCCTACTGAGGTAATGGAGAAGTATGTACTTGTCGCAGCACTCTGCACGCATCCTCAGCTGCACGCTAGGCCAACAATGGATCAAGTGGTGAAGATACTAGAGGCAGATTCAGCGTCAGGTCCTTTAATTATTCCGGAGCGGCCTCTTCCGGTAGTCGCAAACCTGGCTGAGATTGAGAGATCAGCCAGTAGCAGTGGCTCAGGTCAGCTGTTTAGTCCCTCTGGTTTCCGGTCTTTTACTCATATAAATGAAGATGCTGCTTTGGAGTCTCCTAAAGAAGAATGA
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| CDS seq | ATGTCCTCCTCCCTCCCCTCTCCCCTCCTCTTCCTCCTCCTCCTCCTCCCCTTCCCCGCCGCGGTTCGTTCCCAGCCGGCGGCGGCCCCCGCGCCGCAGCAGCAATGCCCGCTCAACTTCACCGCGCTCCGGCCCTTCCTGGCCCAGCCGCTCCCGCCCGACGACTCCGCGCGCTGCCTCCTCGCCGTGCAGTCCGTTCGCCTCCTCCTCGCGCTCCACCTCGCCGCCACAGGATCCTTCGTCCTCCCGGCTAACTCCTCCTGCCTCCCGCCGCTCCGCGCCGAGCTCCCCTTCGCGCTCCCGTCGCCCTCCGCCTGCGGCCTCCAGGGGCTCGACGCGCTCCTCGCGTCCCCGGGGTGCGCCAACGTTTCCACTCTCGGGGACTTCGACGCCGCCGTGCCGCCGTCCTCGCGGGCGGACATGAACGCCAGCTGCAACCGGGACCTCACCCCGGTCCCCGACTGTACCTCCTGCACCACCTCGCTCAGCAAGGCCGCGGCGGCCTACCTCCTCCCGGGCTCCCCCAACGACGGTGGGAACAACGTCACTGGCTGCGTCCAGTACCCCTTCATCTACGCCGGCGCCGCCGCCAGCCCGCGCGGCGCCGACGACCCAGCCACGGCCAACTGCCTCTACCTCCTCAAGGTGAACTCTGCTTCCAAGGCCAGCTCCAGCGTCCCTGGTTGGGTCTACGGCGTCGTGTTTGGCTGCGTCGCCATGGTTCTGCTCGTTGCCGCGGCGGCTGCCTCTTGGTTCCTGGTGCGGCGGCGGCGGAGGCGGGCCGCCGCCGCGGCGCTGGCCAAGGCCGCGGCCGACAGCAGGAGCAAGCGCTCGCAGGCGATGGAGTCAATCAGCGCGAGCACCACGCTAGTCCAGTTCACCTACGACGAGATCAAGGCGGCCACTGGGGGATTCGCAAGGGAGAGCATCATTGGCCGCGGTGGGTTCGGCAATGTGTACAAGGGCGTGCTCCCGGACGGCGCGGAGGTGGCCGTGAAGCGGTTCAAGAACTGCTCCGCGGCTGGGGATGCCGCGTTCGCGCACGAGGTGGAGGTCGTGGCCAGCGTCCGCCATGTCAACCTGGTCGCCATCCGTGGGTACTGCATCGCTACCACTGAGAGAGAAGGCCACCAGCGAATGATTGTGTGTGACCTGATGCACAATGGCAGCCTGCACGATCACCTGTTCGGTGCCGGGGAATGCCAGATGACGTGGCCGGTGAGGCAGAGGATTGCCATAGGGATGGCGCGCGGCCTGGCCTATCTGCACCGCGGGGCGCAGCCCGCCATCATTCACAGGGATATCAAAGCGAGCAATATCTTGCTTGATGACGACTTTGAGGCCATGGTGGCTGATTTCGGATTGGCCAAGTTTGCACCGGAAGGGATGACGCATGTGAGCACAAGGGTTGCTGGCACGCTGGGTTATGTCGCTCCAGAGTATGCACTGTATGGCCAATTGACTGAGAAGAGTGATGTCTATAGCTTCGGAGTTGTACTTCTTGAGCTTCTAAGTGGAAAGAGGGCATTTATCTCTCTTGGTGAAGGCCAGAACTTTGTGCTCAGTGAATGGGCTTGGTTATTGGTCCGGAGGGGGAAGACAGTGGATGTGATCCAAGAAGGAATGGTTGAGCCTGGTCCTACTGAGGTAATGGAGAAGTATGTACTTGTCGCAGCACTCTGCACGCATCCTCAGCTGCACGCTAGGCCAACAATGGATCAAGTGGTGAAGATACTAGAGGCAGATTCAGCGTCAGGTCCTTTAATTATTCCGGAGCGGCCTCTTCCGGTAGTCGCAAACCTGGCTGAGATTGAGAGATCAGCCAGTAGCAGTGGCTCAGGTCAGCTGTTTAGTCCCTCTGGTTTCCGGTCTTTTACTCATATAAATGAAGATGCTGCTTTGGAGTCTCCTAAAGAAGAATGA
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| Protein seq | MSSSLPSPLLFLLLLLPFPAAVRSQPAAAPAPQQQCPLNFTALRPFLAQPLPPDDSARCLLAVQSVRLLLALHLAATGSFVLPANSSCLPPLRAELPFALPSPSACGLQGLDALLASPGCANVSTLGDFDAAVPPSSRADMNASCNRDLTPVPDCTSCTTSLSKAAAAYLLPGSPNDGGNNVTGCVQYPFIYAGAAASPRGADDPATANCLYLLKVNSASKASSSVPGWVYGVVFGCVAMVLLVAAAAASWFLVRRRRRRAAAAALAKAAADSRSKRSQAMESISASTTLVQFTYDEIKAATGGFARESIIGRGGFGNVYKGVLPDGAEVAVKRFKNCSAAGDAAFAHEVEVVASVRHVNLVAIRGYCIATTEREGHQRMIVCDLMHNGSLHDHLFGAGECQMTWPVRQRIAIGMARGLAYLHRGAQPAIIHRDIKASNILLDDDFEAMVADFGLAKFAPEGMTHVSTRVAGTLGYVAPEYALYGQLTEKSDVYSFGVVLLELLSGKRAFISLGEGQNFVLSEWAWLLVRRGKTVDVIQEGMVEPGPTEVMEKYVLVAALCTHPQLHARPTMDQVVKILEADSASGPLIIPERPLPVVANLAEIERSASSSGSGQLFSPSGFRSFTHINEDAALESPKEE |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase RKF3 [UniProtKB/Swiss-Prot:P93050] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_01g0018040 | OsAzu_01g0018040.01 | Chr01 | 16488101 | 16490150 | + | NAM | ||
| CDS seq | ATGTCCTCCTCCCTCCCCTCTCCCCTCCTCTTCCTCCTCCTCCTCCTCCCCTTCCCCGCCGCGGTTCGTTCCCAGCCGGCGGCGGCCCCCGCGCCGCAGCAGCAATGCCCGCTCAACTTCACCGCGCTCCGGCCCTTCCTGGCCCAGCCGCTCCCGCCCGACGACTCCGCGCGCTGCCTCCTCGCCGTGCAGTCCGTTCGCCTCCTCCTCGCGCTCCACCTCGCCGCCACAGGATCCTTCGTCCTCCCGGCTAACTCCTCCTGCCTCCCGCCGCTCCGCGCCGAGCTCCCCTTCGCGCTCCCGTCGCCCTCCGCCTGCGGCCTCCAGGGGCTCGACGCGCTCCTCGCGTCCCCGGGGTGCGCCAACGTTTCCACTCTCGGGGACTTCGACGCCGCCGTGCCGCCGTCCTCGCGGGCGGACATGAACGCCAGCTGCAACCGGGACCTCACCCCGGTCCCCGACTGTACCTCCTGCACCACCTCGCTCAGCAAGGCCGCGGCGGCCTACCTCCTCCCGGGCTCCCCCAACGACGGTGGGAACAACGTCACTGGCTGCGTCCAGTACCCCTTCATCTACGCCGGCGCCGCCGCCAGCCCGCGCGGCGCCGACGACCCAGCCACGGCCAACTGCCTCTACCTCCTCAAGGTGAACTCTGCTTCCAAGGCCAGCTCCAGCGTCCCTGGTTGGGTCTACGGCGTCGTGTTTGGCTGCGTCGCCATGGTTCTGCTCGTTGCCGCGGCGGCTGCCTCTTGGTTCCTGGTGCGGCGGCGGCGGAGGCGGGCCGCCGCCGCGGCGCTGGCCAAGGCCGCGGCCGACAGCAGGAGCAAGCGCTCGCAGGCGATGGAGTCAATCAGCGCGAGCACCACGCTAGTCCAGTTCACCTACGACGAGATCAAGGCGGCCACTGGGGGATTCGCAAGGGAGAGCATCATTGGCCGCGGTGGGTTCGGCAATGTGTACAAGGGCGTGCTCCCGGACGGCGCGGAGGTGGCCGTGAAGCGGTTCAAGAACTGCTCCGCGGCTGGGGATGCCGCGTTCGCGCACGAGGTGGAGGTCGTGGCCAGCGTCCGCCATGTCAACCTGGTCGCCATCCGTGGGTACTGCATCGCTACCACTGAGAGAGAAGGCCACCAGCGAATGATTGTGTGTGACCTGATGCACAATGGCAGCCTGCACGATCACCTGTTCGGTGCCGGGGAATGCCAGATGACGTGGCCGGTGAGGCAGAGGATTGCCATAGGGATGGCGCGCGGCCTGGCCTATCTGCACCGCGGGGCGCAGCCCGCCATCATTCACAGGGATATCAAAGCGAGCAATATCTTGCTTGATGACGACTTTGAGGCCATGGTGGCTGATTTCGGATTGGCCAAGTTTGCACCGGAAGGGATGACGCATGTGAGCACAAGGGTTGCTGGCACGCTGGGTTATGTCGCTCCAGAGTATGCACTGTATGGCCAATTGACTGAGAAGAGTGATGTCTATAGCTTCGGAGTTGTACTTCTTGAGCTTCTAAGTGGAAAGAGGGCATTTATCTCTCTTGGTGAAGGCCAGAACTTTGTGCTCAGTGAATGGGCTTGGTTATTGGTCCGGAGGGGGAAGACAGTGGATGTGATCCAAGAAGGAATGGTTGAGCCTGGTCCTACTGAGGTAATGGAGAAGTATGTACTTGTCGCAGCACTCTGCACGCATCCTCAGCTGCACGCTAGGCCAACAATGGATCAAGTGGTGAAGATACTAGAGGCAGATTCAGCGTCAGGTCCTTTAATTATTCCGGAGCGGCCTCTTCCGGTAGTCGCAAACCTGGCTGAGATTGAGAGATCAGCCAGTAGCAGTGGCTCAGGTCAGCTGTTTAGTCCCTCTGGTTTCCGGTCTTTTACTCATATAAATGAAGATGCTGCTTTGGAGTCTCCTAAAGAAGAATGA
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| Protein seq | MSSSLPSPLLFLLLLLPFPAAVRSQPAAAPAPQQQCPLNFTALRPFLAQPLPPDDSARCLLAVQSVRLLLALHLAATGSFVLPANSSCLPPLRAELPFALPSPSACGLQGLDALLASPGCANVSTLGDFDAAVPPSSRADMNASCNRDLTPVPDCTSCTTSLSKAAAAYLLPGSPNDGGNNVTGCVQYPFIYAGAAASPRGADDPATANCLYLLKVNSASKASSSVPGWVYGVVFGCVAMVLLVAAAAASWFLVRRRRRRAAAAALAKAAADSRSKRSQAMESISASTTLVQFTYDEIKAATGGFARESIIGRGGFGNVYKGVLPDGAEVAVKRFKNCSAAGDAAFAHEVEVVASVRHVNLVAIRGYCIATTEREGHQRMIVCDLMHNGSLHDHLFGAGECQMTWPVRQRIAIGMARGLAYLHRGAQPAIIHRDIKASNILLDDDFEAMVADFGLAKFAPEGMTHVSTRVAGTLGYVAPEYALYGQLTEKSDVYSFGVVLLELLSGKRAFISLGEGQNFVLSEWAWLLVRRGKTVDVIQEGMVEPGPTEVMEKYVLVAALCTHPQLHARPTMDQVVKILEADSASGPLIIPERPLPVVANLAEIERSASSSGSGQLFSPSGFRSFTHINEDAALESPKEE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.369393 | 1.309187 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0384300 | RBH | 0.325398 | 0.673354 | 0.719146 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g28730 | RBH | 0.239480 | 0.492873 | 0.201468 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0384300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0017710 | RBH | 0.0 | 0.060796 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0017950 | RBH | 0.0 | 2.175084 | 0.085555 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0017310 | RBH | 0.018430 | 0.086322 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0017220 | RBH | 0.817842 | 3.596972 | 1.926717 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0270200 | RBH | 0.991466 | 4.50573 | 1.6117055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0017370 | RBH | 0.0 | 0.374825 | 0.290131 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0268100 | RBH | 1.5036765 | 3.503056 | 3.115409 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0017230 | RBH | 0.040770 | 0.010692 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0017210 | RBH | 0.0 | 3.146911 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0017450 | RBH | 2.405037 | 3.223193 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0017220 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0017110 | RBH | 0.0 | 1.262695 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G017700 | RBH | 0.0 | 0.867734 | 0.447065 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0017300 | RBH | 0.228375 | 1.817827 | 0.754363 |
