Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
Os01g0384300 OGI:01050820 | 16/16 Nipponbare | IRGSP 1.0 | RAP-db Chr01:16086670-16088900
Gene Symbol SPARK6, OsSPARK6
DNA seq

TCCTCCCCCTTCCCCAACCCACACCCACACACACTTCCAAGCTAGCCGTCTCCAACAACCCTCCCCCCACCATCCTCCCCATGTCCTCCTCCCTCCCCTCTCCCCTCCTCTTCCTCCTCCTCCTCCTCCCCTTCCCCGCCGCGGTTCGTTCCCAGCCGGCGGCGGCCCCCGCGCCGCAGCAGCAATGCCCGCTCAACTTCACCGCGCTCCGGCCCTTCCTGGCCCAGCCGCTCCCGCCCGACGACTCCGCGCGCTGCCTCCTCGCCGTGCAGTCCGTTCGCCTCCTCCTCGCGCTCCACCTCGCCGCCACAGGATCCTTCGTCCTCCCGGCTAACTCCTCCTGCCTCCCGCCGCTCCGCGCCGAGCTCCCCTTCGCGCTCCCGTCGCCCTCCGCCTGCGGCCTCCAGGGGCTCGACGCGCTCCTCGCGTCCCCGGGGTGCGCCAACGTTTCCACTCTCGGGGACTTCGACGCCGCCGTGCCGCCGTCCTCGCGGGCGGACATGAACGCCAGCTGCAACCGGGACCTCACCCCGGTCCCCGACTGTACCTCCTGCACCACCTCGCTCAGCAAGGCCGCGGCGGCCTACCTCCTCCCGGGCTCCCCCAACGACGGTGGGAACAACGTCACCGGCTGCGTCCAGTACCCCTTCATCTACGCCGGCGCCGCCGCCAGCCCGCGCGGCGCCGACGACCCAGCCACGGCCAACTGCCTCTACCTCCTCAAGGTGAACTCTGCTTCCAAGGCCAGCTCCAGCGTCCCTGGTTGGGTCTACGGCGTCGTGTTTGGCTGCGTCGCCATGGTTCTGCTCGTTGCCGCGGCGGCTGCCTCTTGGTTCCTGGTGCGGCGGCGGCGGAGGCGGGCCGCCGCCGCGGCGCTGGCCAAGGCCGCGGCCGACAGCAGGAGCAAGCGCTCGCAGGCGATGGAGTCAATCAGCGCGAGCACCACGCTAGTCCAGTTCACCTACGACGAGATCAAGGCGGCCACTGGGGGATTCGCAAGGGAGAGCATCATTGGCCGCGGTGGGTTCGGCAATGTGTACAAGGGCGTGCTCCCGGACGGCGCGGAGGTGGCCGTGAAGCGGTTCAAGAACTGCTCCGCGGCTGGGGATGCCGCGTTCGCGCACGAGGTGGAGGTCGTGGCCAGCGTCCGCCATGTCAACCTGGTCGCCATCCGTGGGTACTGCATCGCTACCACTGAGAGAGAAGGCCACCAGCGAATGATTGTGTGTGACCTGATGCACAATGGCAGCCTGCACGATCACCTGTTCGGTGCCGGGGAATGCCAGATGACGTGGCCGGTGAGGCAGAGGATTGCCATAGGGATGGCGCGCGGCCTGGCCTATCTGCACCGCGGGGCGCAGCCCGCCATCATTCACAGGGATATCAAAGCGAGCAATATCTTGCTTGATGACGACTTTGAGGCCATGGTGGCTGATTTCGGATTGGCCAAGTTTGCACCGGAAGGGATGACGCATGTGAGCACAAGGGTTGCTGGCACGCTGGGTTATGTCGCTCCAGAGTATGCACTGTATGGCCAATTGACTGAGAAGAGTGATGTCTATAGCTTCGGAGTTGTACTTCTTGAGCTTCTAAGTGGAAAGAGGGCATTTATCTCTCTTGGTGAAGGCCAGAACTTTGTGCTCAGTGAATGGGCTTGGTTATTGGTCCGGAGGGGGAAGACAGTGGATGTGATCCAAGAAGGAATGGTTGAGCCTGGTCCTACTGAGGTAATGGAGAAGTATGTACTTGTCGCAGCACTCTGCACGCATCCTCAGCTGCACGCTAGGCCAACAATGGATCAAGTGGTGAAGATACTAGAGGCAGATTCAGCGTCAGGTCCTTTAATTATTCCGGAGCGGCCTCTTCCGGTAGTCGCAAACCTGGCTGAGATTGAGAGATCAGCCAGTAGCAGTGGCTCAGGTCAGCTGTTTAGTCCCTCTGGTTTCCGGTCTTTTACTCATATAAATGAAGATGCTGCTTTGGAGTCTCCTAAAGAAGAATGACACTTTTCTTAGCTGAGTAGAGAAAAGTTTATTTCTAGATTCTCTGTGTACCATATTTTTTTTGTTAGCTTGATTTCTCTTAATGGAATTACTCAATTGTGTAGATAGAAATTGTACTTTTGCCCCCACCCAGGAAATGTAAGATTCTTTGGTGACAGTTGAATTCATTTAAAACATATCTGCTTTTTTATTTCTTTATCATATATTTGACATTTAAATATCATTGAT

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CDS seq

ATGTCCTCCTCCCTCCCCTCTCCCCTCCTCTTCCTCCTCCTCCTCCTCCCCTTCCCCGCCGCGGTTCGTTCCCAGCCGGCGGCGGCCCCCGCGCCGCAGCAGCAATGCCCGCTCAACTTCACCGCGCTCCGGCCCTTCCTGGCCCAGCCGCTCCCGCCCGACGACTCCGCGCGCTGCCTCCTCGCCGTGCAGTCCGTTCGCCTCCTCCTCGCGCTCCACCTCGCCGCCACAGGATCCTTCGTCCTCCCGGCTAACTCCTCCTGCCTCCCGCCGCTCCGCGCCGAGCTCCCCTTCGCGCTCCCGTCGCCCTCCGCCTGCGGCCTCCAGGGGCTCGACGCGCTCCTCGCGTCCCCGGGGTGCGCCAACGTTTCCACTCTCGGGGACTTCGACGCCGCCGTGCCGCCGTCCTCGCGGGCGGACATGAACGCCAGCTGCAACCGGGACCTCACCCCGGTCCCCGACTGTACCTCCTGCACCACCTCGCTCAGCAAGGCCGCGGCGGCCTACCTCCTCCCGGGCTCCCCCAACGACGGTGGGAACAACGTCACCGGCTGCGTCCAGTACCCCTTCATCTACGCCGGCGCCGCCGCCAGCCCGCGCGGCGCCGACGACCCAGCCACGGCCAACTGCCTCTACCTCCTCAAGGTGAACTCTGCTTCCAAGGCCAGCTCCAGCGTCCCTGGTTGGGTCTACGGCGTCGTGTTTGGCTGCGTCGCCATGGTTCTGCTCGTTGCCGCGGCGGCTGCCTCTTGGTTCCTGGTGCGGCGGCGGCGGAGGCGGGCCGCCGCCGCGGCGCTGGCCAAGGCCGCGGCCGACAGCAGGAGCAAGCGCTCGCAGGCGATGGAGTCAATCAGCGCGAGCACCACGCTAGTCCAGTTCACCTACGACGAGATCAAGGCGGCCACTGGGGGATTCGCAAGGGAGAGCATCATTGGCCGCGGTGGGTTCGGCAATGTGTACAAGGGCGTGCTCCCGGACGGCGCGGAGGTGGCCGTGAAGCGGTTCAAGAACTGCTCCGCGGCTGGGGATGCCGCGTTCGCGCACGAGGTGGAGGTCGTGGCCAGCGTCCGCCATGTCAACCTGGTCGCCATCCGTGGGTACTGCATCGCTACCACTGAGAGAGAAGGCCACCAGCGAATGATTGTGTGTGACCTGATGCACAATGGCAGCCTGCACGATCACCTGTTCGGTGCCGGGGAATGCCAGATGACGTGGCCGGTGAGGCAGAGGATTGCCATAGGGATGGCGCGCGGCCTGGCCTATCTGCACCGCGGGGCGCAGCCCGCCATCATTCACAGGGATATCAAAGCGAGCAATATCTTGCTTGATGACGACTTTGAGGCCATGGTGGCTGATTTCGGATTGGCCAAGTTTGCACCGGAAGGGATGACGCATGTGAGCACAAGGGTTGCTGGCACGCTGGGTTATGTCGCTCCAGAGTATGCACTGTATGGCCAATTGACTGAGAAGAGTGATGTCTATAGCTTCGGAGTTGTACTTCTTGAGCTTCTAAGTGGAAAGAGGGCATTTATCTCTCTTGGTGAAGGCCAGAACTTTGTGCTCAGTGAATGGGCTTGGTTATTGGTCCGGAGGGGGAAGACAGTGGATGTGATCCAAGAAGGAATGGTTGAGCCTGGTCCTACTGAGGTAATGGAGAAGTATGTACTTGTCGCAGCACTCTGCACGCATCCTCAGCTGCACGCTAGGCCAACAATGGATCAAGTGGTGAAGATACTAGAGGCAGATTCAGCGTCAGGTCCTTTAATTATTCCGGAGCGGCCTCTTCCGGTAGTCGCAAACCTGGCTGAGATTGAGAGATCAGCCAGTAGCAGTGGCTCAGGTCAGCTGTTTAGTCCCTCTGGTTTCCGGTCTTTTACTCATATAAATGAAGATGCTGCTTTGGAGTCTCCTAAAGAAGAATGA

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Protein seq

MSSSLPSPLLFLLLLLPFPAAVRSQPAAAPAPQQQCPLNFTALRPFLAQPLPPDDSARCLLAVQSVRLLLALHLAATGSFVLPANSSCLPPLRAELPFALPSPSACGLQGLDALLASPGCANVSTLGDFDAAVPPSSRADMNASCNRDLTPVPDCTSCTTSLSKAAAAYLLPGSPNDGGNNVTGCVQYPFIYAGAAASPRGADDPATANCLYLLKVNSASKASSSVPGWVYGVVFGCVAMVLLVAAAAASWFLVRRRRRRAAAAALAKAAADSRSKRSQAMESISASTTLVQFTYDEIKAATGGFARESIIGRGGFGNVYKGVLPDGAEVAVKRFKNCSAAGDAAFAHEVEVVASVRHVNLVAIRGYCIATTEREGHQRMIVCDLMHNGSLHDHLFGAGECQMTWPVRQRIAIGMARGLAYLHRGAQPAIIHRDIKASNILLDDDFEAMVADFGLAKFAPEGMTHVSTRVAGTLGYVAPEYALYGQLTEKSDVYSFGVVLLELLSGKRAFISLGEGQNFVLSEWAWLLVRRGKTVDVIQEGMVEPGPTEVMEKYVLVAALCTHPQLHARPTMDQVVKILEADSASGPLIIPERPLPVVANLAEIERSASSSGSGQLFSPSGFRSFTHINEDAALESPKEE

Function Probable LRR receptor-like serine/threonine-protein kinase RKF3 [UniProtKB/Swiss-Prot:P93050]

Transcripts

Gene Transcript Chromosome Start End Strand Source
Os01g0384300 Os01t0384300-00 Chr01 16086670 16088900 + irgsp1_rep
CDS seq

ATGTCCTCCTCCCTCCCCTCTCCCCTCCTCTTCCTCCTCCTCCTCCTCCCCTTCCCCGCCGCGGTTCGTTCCCAGCCGGCGGCGGCCCCCGCGCCGCAGCAGCAATGCCCGCTCAACTTCACCGCGCTCCGGCCCTTCCTGGCCCAGCCGCTCCCGCCCGACGACTCCGCGCGCTGCCTCCTCGCCGTGCAGTCCGTTCGCCTCCTCCTCGCGCTCCACCTCGCCGCCACAGGATCCTTCGTCCTCCCGGCTAACTCCTCCTGCCTCCCGCCGCTCCGCGCCGAGCTCCCCTTCGCGCTCCCGTCGCCCTCCGCCTGCGGCCTCCAGGGGCTCGACGCGCTCCTCGCGTCCCCGGGGTGCGCCAACGTTTCCACTCTCGGGGACTTCGACGCCGCCGTGCCGCCGTCCTCGCGGGCGGACATGAACGCCAGCTGCAACCGGGACCTCACCCCGGTCCCCGACTGTACCTCCTGCACCACCTCGCTCAGCAAGGCCGCGGCGGCCTACCTCCTCCCGGGCTCCCCCAACGACGGTGGGAACAACGTCACCGGCTGCGTCCAGTACCCCTTCATCTACGCCGGCGCCGCCGCCAGCCCGCGCGGCGCCGACGACCCAGCCACGGCCAACTGCCTCTACCTCCTCAAGGTGAACTCTGCTTCCAAGGCCAGCTCCAGCGTCCCTGGTTGGGTCTACGGCGTCGTGTTTGGCTGCGTCGCCATGGTTCTGCTCGTTGCCGCGGCGGCTGCCTCTTGGTTCCTGGTGCGGCGGCGGCGGAGGCGGGCCGCCGCCGCGGCGCTGGCCAAGGCCGCGGCCGACAGCAGGAGCAAGCGCTCGCAGGCGATGGAGTCAATCAGCGCGAGCACCACGCTAGTCCAGTTCACCTACGACGAGATCAAGGCGGCCACTGGGGGATTCGCAAGGGAGAGCATCATTGGCCGCGGTGGGTTCGGCAATGTGTACAAGGGCGTGCTCCCGGACGGCGCGGAGGTGGCCGTGAAGCGGTTCAAGAACTGCTCCGCGGCTGGGGATGCCGCGTTCGCGCACGAGGTGGAGGTCGTGGCCAGCGTCCGCCATGTCAACCTGGTCGCCATCCGTGGGTACTGCATCGCTACCACTGAGAGAGAAGGCCACCAGCGAATGATTGTGTGTGACCTGATGCACAATGGCAGCCTGCACGATCACCTGTTCGGTGCCGGGGAATGCCAGATGACGTGGCCGGTGAGGCAGAGGATTGCCATAGGGATGGCGCGCGGCCTGGCCTATCTGCACCGCGGGGCGCAGCCCGCCATCATTCACAGGGATATCAAAGCGAGCAATATCTTGCTTGATGACGACTTTGAGGCCATGGTGGCTGATTTCGGATTGGCCAAGTTTGCACCGGAAGGGATGACGCATGTGAGCACAAGGGTTGCTGGCACGCTGGGTTATGTCGCTCCAGAGTATGCACTGTATGGCCAATTGACTGAGAAGAGTGATGTCTATAGCTTCGGAGTTGTACTTCTTGAGCTTCTAAGTGGAAAGAGGGCATTTATCTCTCTTGGTGAAGGCCAGAACTTTGTGCTCAGTGAATGGGCTTGGTTATTGGTCCGGAGGGGGAAGACAGTGGATGTGATCCAAGAAGGAATGGTTGAGCCTGGTCCTACTGAGGTAATGGAGAAGTATGTACTTGTCGCAGCACTCTGCACGCATCCTCAGCTGCACGCTAGGCCAACAATGGATCAAGTGGTGAAGATACTAGAGGCAGATTCAGCGTCAGGTCCTTTAATTATTCCGGAGCGGCCTCTTCCGGTAGTCGCAAACCTGGCTGAGATTGAGAGATCAGCCAGTAGCAGTGGCTCAGGTCAGCTGTTTAGTCCCTCTGGTTTCCGGTCTTTTACTCATATAAATGAAGATGCTGCTTTGGAGTCTCCTAAAGAAGAATGA

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Protein seq

MSSSLPSPLLFLLLLLPFPAAVRSQPAAAPAPQQQCPLNFTALRPFLAQPLPPDDSARCLLAVQSVRLLLALHLAATGSFVLPANSSCLPPLRAELPFALPSPSACGLQGLDALLASPGCANVSTLGDFDAAVPPSSRADMNASCNRDLTPVPDCTSCTTSLSKAAAAYLLPGSPNDGGNNVTGCVQYPFIYAGAAASPRGADDPATANCLYLLKVNSASKASSSVPGWVYGVVFGCVAMVLLVAAAAASWFLVRRRRRRAAAAALAKAAADSRSKRSQAMESISASTTLVQFTYDEIKAATGGFARESIIGRGGFGNVYKGVLPDGAEVAVKRFKNCSAAGDAAFAHEVEVVASVRHVNLVAIRGYCIATTEREGHQRMIVCDLMHNGSLHDHLFGAGECQMTWPVRQRIAIGMARGLAYLHRGAQPAIIHRDIKASNILLDDDFEAMVADFGLAKFAPEGMTHVSTRVAGTLGYVAPEYALYGQLTEKSDVYSFGVVLLELLSGKRAFISLGEGQNFVLSEWAWLLVRRGKTVDVIQEGMVEPGPTEVMEKYVLVAALCTHPQLHARPTMDQVVKILEADSASGPLIIPERPLPVVANLAEIERSASSSGSGQLFSPSGFRSFTHINEDAALESPKEE

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM None None None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0384300 RBH 0.325398 0.673354 0.719146
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g28730 RBH 0.239480 0.492873 0.201468
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0018040 RBH 0.0 2.369393 1.309187
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0017710 RBH 0.0 0.060796 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0017950 RBH 0.0 2.175084 0.085555
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0017310 RBH 0.018430 0.086322 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0017220 RBH 0.817842 3.596972 1.926717
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0270200 RBH 0.991466 4.50573 1.6117055
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0017370 RBH 0.0 0.374825 0.290131
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0268100 RBH 1.5036765 3.503056 3.115409
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0017230 RBH 0.040770 0.010692 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0017210 RBH 0.0 3.146911 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0017450 RBH 2.405037 3.223193 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0017220 RBH 0.000000 0.000000 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0017110 RBH 0.0 1.262695 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G017700 RBH 0.0 0.867734 0.447065
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0017300 RBH 0.228375 1.817827 0.754363
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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