Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_12g0013160 | OGI:12048720 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr12:17441103-17441495 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACATCAGCTTTCTGGCGATGGCTCTCGCGGTGTGGCGAGCGTGCAGGGCGAGGCCACGGACAAGGCCCCTCTCCTCCTCGGCGTCGTCGACCGCCTCGTACGTGCCATCGAGCTCATCCTGGATGCGGAAGTAGTCGAGCTCGTCCAGCACGTCGTCGGCGTCGTACGCCAGGTCCCGGAGCTGAGACAGCAGCTGATCCAGTGCACCGCTACGGATGTCCCGGCCCTCGGCATTTTCGAGCATCGCCTGCGCATGGAGGAGCAGGAGCTTGAGCTCGCGGATGTTGGGGCCAAGCTTCTTGCTCGCCGCCCATGCCTCCATCAGCTCGCCGGTGACGGGGCCCAGCGCCCTGCCCACCACCCACCGTGCTGCGCTGACGGCGAACTCCAT |
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| CDS seq | ATGGAGTTCGCCGTCAGCGCAGCACGGTGGGTGGTGGGCAGGGCGCTGGGCCCCGTCACCGGCGAGCTGATGGAGGCATGGGCGGCGAGCAAGAAGCTTGGCCCCAACATCCGCGAGCTCAAGCTCCTGCTCCTCCATGCGCAGGCGATGCTCGAAAATGCCGAGGGCCGGGACATCCGTAGCGGTGCACTGGATCAGCTGCTGTCTCAGCTCCGGGACCTGGCGTACGACGCCGACGACGTGCTGGACGAGCTCGACTACTTCCGCATCCAGGATGAGCTCGATGGCACGTACGAGGCGGTCGACGACGCCGAGGAGGAGAGGGGCCTTGTCCGTGGCCTCGCCCTGCACGCTCGCCACACCGCGAGAGCCATCGCCAGAAAGCTGATGTGA |
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| Protein seq | MEFAVSAARWVVGRALGPVTGELMEAWAASKKLGPNIRELKLLLLHAQAMLENAEGRDIRSGALDQLLSQLRDLAYDADDVLDELDYFRIQDELDGTYEAVDDAEEERGLVRGLALHARHTARAIARKLM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0013160 | OsARC_12g0013160.01 | Chr12 | 17441103 | 17441495 | - | NAM | ||
| CDS seq | ATGGAGTTCGCCGTCAGCGCAGCACGGTGGGTGGTGGGCAGGGCGCTGGGCCCCGTCACCGGCGAGCTGATGGAGGCATGGGCGGCGAGCAAGAAGCTTGGCCCCAACATCCGCGAGCTCAAGCTCCTGCTCCTCCATGCGCAGGCGATGCTCGAAAATGCCGAGGGCCGGGACATCCGTAGCGGTGCACTGGATCAGCTGCTGTCTCAGCTCCGGGACCTGGCGTACGACGCCGACGACGTGCTGGACGAGCTCGACTACTTCCGCATCCAGGATGAGCTCGATGGCACGTACGAGGCGGTCGACGACGCCGAGGAGGAGAGGGGCCTTGTCCGTGGCCTCGCCCTGCACGCTCGCCACACCGCGAGAGCCATCGCCAGAAAGCTGATGTGA
More
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| Protein seq | MEFAVSAARWVVGRALGPVTGELMEAWAASKKLGPNIRELKLLLLHAQAMLENAEGRDIRSGALDQLLSQLRDLAYDADDVLDELDYFRIQDELDGTYEAVDDAEEERGLVRGLALHARHTARAIARKLM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.150093 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0481400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g29690 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0482100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0013340 | RBH | 0.184188 | 1.082872 | 0.883537 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0013460 | RBH | 0.0 | 2.561674 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0013370 | RBH | 0.0 | 4.450537 | 1.150632 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0013170 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0012870 | RBH | 1.994427 | 37.424152 | 4.356055 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0245900 | RBH | 0.0295895 | 0.8778265 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013050 | RBH | 0.000000 | 0.625657 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0266000 | RBH | 0.1470785 | 2.616916 | 0.592985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0013000 | RBH | 0.145359 | 0.271764 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0013330 | RBH | 0.504766 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0013170 | RBH | 0.0 | 15.008129 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0013120 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0013300 | RBH | 0.443981 | 0.695107 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G013020 | RBH | 0.128770 | 7.711901 | 0.360691 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0012810 | RBH | 0.182731 | 0.0 | 0.442502 |
