Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_12g0009670 | OGI:12029340 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr12:10438124-10440844 | ||||||||
| Gene Symbol | HLL | ||||||||||
| DNA seq | GAAGGAAAGAAACAAGAAAAGCTTTGTTTTGGAATTAGATGATACTACATCACATGCATGAACATCTGAACTGAAATATCATACATGGCGAAAAGACCACCTTATTTTCTGCATGTCCCAGAAAGATAATGGTAGGAATAGGGGTACGGATGAACTGAAACGCTTTGGGATCAGAAATTACAAGAGGCACGTTCTAATTTCAAGTTTAACAACAGAATACAAGCAATGTATGTTAGCCATCGGAATGTGATGCAACAATACTGAGGTTAAATGGCAGTACAAAATCTGACTTGTGAAGGATTATTGACTATAGGCAGACCCATTAGTTCACTTACTCCTTTCAACGTACATTATTGCAGACAGCTGATGAAAGCAAATGTCGAATACTCTTCAAGGCAGACCCATGTTTATTTCGTTCTGCATAGATATCTCAAACTATGTGCTCAGCTAACGCCAGGATCTTGAGATGCTTCTTTTTTCTGAGTTCATGGGGAACAGGACCAAAGACACGGGTGCCAATCAGCTCGCCTTTGTTGTTCACCAGAACTATCGCATTGTCATCGAATTGGATCTCACTGCCATCGTTGCGTCCTCGCTTCATAGCAGCACGGACAACCACTCCGTAGACCACATCACCTTTCTTGACCTTACCACGGGGTTGTGCTTCCTTGACAGATCCAATTATAGTGTCCCCAAGCCTTGCTCCTTTCTTCCCCCTCAAGGACTGTATGCACATTACACGCTTGGCGCCAGAGTTGTCTACCACCTTGAGGTTGGTTCTCATCTGAATGAATGTTCTGATTTGCTGAAAGGAGAATGAGAACGTGACTTATAATTTTTACTACAACCATGATGATACAAACAAATTCAAATAACTGCAATTCTAGCAACAATCCTGTTATCTTAGCACCATATAGCAGGATGAAGAAAATTTATTCAGAAAACTAGCAGACATGTATTCTCTGCTTGGTTTTGACCCGAGAACAATAAACAGTGTGCCATAAAAGAAAACATGTAAGATACCAAGAGTCTAGTCTGACAATTGTTCTAGTGAACAAACCTGAATCTCAATCTTGACAGGAATGATATGATAAAAGGTATTCAATTACATCAAACAAAACTACATCACAGTGAAATAACATGCTGGTCTGCTCGGTCAGGGATTCACTGGTGAAAACAACAGATATTTGTCCATGAATCAATTTTAGAATTTTCAAGTTACTATAAGATGTGATATTGCTTAAAAAGCACCATGTTCATGAACTGGATATCAGAAGTACTTTTAAAAAACCGCAAGCATCTGAAAAGGCTAGCAAAATGTCAAATATTTCTGCTTGAAAGAAGAAATCATACCTGACAGATAGCATCACAGTGAGATGGCCTTGTCATAGTTTCAACAGATGAGTTAACCCCCCAAAATAGATTGTTCCCAAGGCCTCCCATCAAGGTACGTCCAACTAAGTAGATGAAGAACAACCATGTGCAACATGTGAATTAGATCAGCATCATACAACACCACCATAAGCAACTATAGTAAGCTACCCATAAGGCAGATGTGAAAAATGGAAATGAACAGCCCAAATATAACCAGAGACAAGATTCTGTTTTCTTATAGTTAAAAGAGCATCAATAAAATATGCACATAATTAACAATTTTACTTTGCAAGTGTTTAAGTTCTACAAATCGATGATCCTATCACATCAGATGACAGCCCAAAAATTTACAAGAGTTGGTTAACTAGGCTAATGCAACCTGAACTGGTTAAGGTCCAACTAATACGCGGTGACAAGCATAACTTTTGTCCATGTGTCTTTATGGATCGAAAAGAACAGTATGAAAGAACACGCATAGCACGTATATTCTAACTTTGCATGAACCAAACGTATCTACTACTTCCTCCGTTTCATAATGTAAGTCTTTCTAGCATTGCCCACATTCATATAGATGTTAATGAATCTAGATGTATATGTGTGTCTAGATTCATTAATATTTATATGAATATGGACAATGCTAAAAAGTCTTACATTATGAAACGGATGGAGTAACACATATCAGTTGCTATCACGAAAGCAATGCAAATGTTGCAATTATTATAGTTGAGAAGCGAGAAGCACATTTACGAATGGGAAATTTTGAGGCAACCATTTTCATTACCTGATGAACATTTTGACCTCAGGAATGCTGCCATTTTCTTCTTGCCTTAAGCCCTTATGTACTCTTTCCTGCAAGGGGGAAAACGGCGTATAAGCCCTCGATCGCAATAAGAACAGCAGAATCAAACCTCTAAAATCACTAAATCTGGATCAAACTAATAGAAAATGGTTCACCCATCTAATCTCATGACACCGGATCATAAGAAGATGGGGTTTCGCTAAGCCTAAGAAGGACTCTCCCGACGCGGAAAACACACACAACATCCAATCCAAATCCAACACCAAGCAACATGAAGCAACCAAGAAGATGAAGAGCCCTAGAACCCAAGCACGCGAGTGCCTCTCGAGAGGAACCGCGCACCAAGTCCAGTTACTCGAGAGGCTCAGGCTCAGCTCACCTTTGTTGAGTCGCCGGAGGGGAATGTTGCGGGGCGGCGCGGCGGCGATCAGCGAGAGAGGCTGCCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCGGGGGCGGGGGCGAGAGAGAGAGAGAGAGAGTTGGGTAGGGCCGAAAAATACGGCCCATGAATAACGTGAGCC
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| CDS seq | ATGGCAGCATTCCTGAGGTCAAAATGTTCATCAGTTGGACGTACCTTGATGGGAGGCCTTGGGAACAATCTATTTTGGGGGGTTAACTCATCTGTTGAAACTATGACAAGGCCATCTCACTGTGATGCTATCTGTCAGCAAATCAGAACATTCATTCAGATGAGAACCAACCTCAAGGTGGTAGACAACTCTGGCGCCAAGCGTGTAATGTGCATACAGTCCTTGAGGGGGAAGAAAGGAGCAAGGCTTGGGGACACTATAATTGGATCTGTCAAGGAAGCACAACCCCGTGGTAAGGTCAAGAAAGGTGATGTGGTCTACGGAGTGGTTGTCCGTGCTGCTATGAAGCGAGGACGCAACGATGGCAGTGAGATCCAATTCGATGACAATGCGATAGTTCTGGTGAACAACAAAGGCGAGCTGATTGGCACCCGTGTCTTTGGTCCTGTTCCCCATGAACTCAGAAAAAAGAAGCATCTCAAGATCCTGGCGTTAGCTGAGCACATAGTTTGA
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| Protein seq | MAAFLRSKCSSVGRTLMGGLGNNLFWGVNSSVETMTRPSHCDAICQQIRTFIQMRTNLKVVDNSGAKRVMCIQSLRGKKGARLGDTIIGSVKEAQPRGKVKKGDVVYGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHELRKKKHLKILALAEHIV |
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| Function | 50S ribosomal protein HLP, mitochondrial [UniProtKB/Swiss-Prot:Q93Z17] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0009670 | OsARC_12g0009670.01 | Chr12 | 10438124 | 10440844 | - | NAM | ||
| CDS seq | ATGGCAGCATTCCTGAGGTCAAAATGTTCATCAGTTGGACGTACCTTGATGGGAGGCCTTGGGAACAATCTATTTTGGGGGGTTAACTCATCTGTTGAAACTATGACAAGGCCATCTCACTGTGATGCTATCTGTCAGCAAATCAGAACATTCATTCAGATGAGAACCAACCTCAAGGTGGTAGACAACTCTGGCGCCAAGCGTGTAATGTGCATACAGTCCTTGAGGGGGAAGAAAGGAGCAAGGCTTGGGGACACTATAATTGGATCTGTCAAGGAAGCACAACCCCGTGGTAAGGTCAAGAAAGGTGATGTGGTCTACGGAGTGGTTGTCCGTGCTGCTATGAAGCGAGGACGCAACGATGGCAGTGAGATCCAATTCGATGACAATGCGATAGTTCTGGTGAACAACAAAGGCGAGCTGATTGGCACCCGTGTCTTTGGTCCTGTTCCCCATGAACTCAGAAAAAAGAAGCATCTCAAGATCCTGGCGTTAGCTGAGCACATAGTTTGA
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| Protein seq | MAAFLRSKCSSVGRTLMGGLGNNLFWGVNSSVETMTRPSHCDAICQQIRTFIQMRTNLKVVDNSGAKRVMCIQSLRGKKGARLGDTIIGSVKEAQPRGKVKKGDVVYGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHELRKKKHLKILALAEHIV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.123337 | 0.334481 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0616200 | SBH | 2.771850 | 2.938641 | 16.252258 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g42180 | SBH | 1.836099 | 1.934347 | 4.082354 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0616200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020880 | SBH | 4.638744 | 39.260052 | 24.377357 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0010000 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009940 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020640 | SBH | 0.153421 | 2.575085 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0009570 | RBH | 1.991886 | 0.000000 | 7.569349 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0151300 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0009620 | RBH | 0.0 | 0.313277 | 0.240713 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0166300 | SBH | 0.233352 | 0.731658 | 3.880301 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009540 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009800 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0009750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0009700 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009770 | RBH | 0.220736 | 11.626383 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009540 | RBH | 0.000000 | 3.483511 | 0.701271 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0020100 | SBH | 2.841747 | 71.522682 | 32.978813 |
