Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0616200 | OGI:12067280 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:26139488-26141761 | ||||||||
| Gene Symbol | HLL | ||||||||||
| DNA seq | AACACATGAACCGAAACACTTTGAGATCAGAAAGCACAAGAGTTCAGTTGCAGTTTCAGGTTTAACAAGAGAACATAAGCAATGTATGCGTTTCCATCTGAATGGAATGCAATACTACAGAGGTTAAATAGTAGTACAGAATCTGATTTGTCTAGGACTGACTGCAGGGCATCAGCTCATTTAATCTTTTGAGGGTACATTATTGCAAACAGAACTGATCAAAACAACGGTGGAATACTCTTGAGACAGCACCATGCTCATTTCATTCTGCAGAACTAACAGGTAGGTTGCCAGGTATGTAAGCATCTCAAACTATGTGTTCCGCTAACGCTAGGATCTTGAGATGCTTCTTTTTCCTGAGTTCGTGGGGAACAGGACCAAATACACGAGTGCCAATCAGCTCGCCTTTGTTGTTCACAAGGACAATCGCGTTGTCATCAAACTGGATCTCGCTGCCATCGTTGCGTCCTCGCTTCATAGCAGCACGGACAACCACTCCATAGACCACATCTCCTTTCTTCACCTTACCACGAGGCTGTGCTTCCTTGACAGATCCAATTATAGTGTCCCCGAGCCTCGCTCCTTTCTTCCCCCTCAAGGACTGGATGCACATAACGCGCTTGGCACCAGAGTTGTCTACCACCTTTAGGTTTGTTCTCATCTGGATGAATGTTCTGATTTGCTGAAACCAGAATGAGAACACGAGTTAAAGTTTTATTCCACATGGAAAACATCCATGATGAGATAACTAACTTCAAAGAACTACATATGCCGGCACCCAGCAACAATCCTATTATCGTCGCACGAATAGCAGGGCACATAAAATTTATTTTAAAATACCAAGACATGGAGTCCCTGCTGTTTTGAGATAAGAACAATAAAAATTCCTCCTAAAGAATGGCTAAAAGAGTACGACAAAAAAGAAACGTATAAGATACTAAGATGGAGTCCAATCTGCCAAACAATCTAGTTTGACAACTGAGCAAATCCCTGATGTCGATCGTAAAAAAAATAATAAAAGGTATTCAATCATATCAACAAAACCACATCATAGTGGAATAAATATATGCTTGTCTACTGTGCCATGGGTTCTCTAGTGAAAAGAACAAGACGTTTGTCCATTAATTAATTTTAGACTTTTCAAGTTGCTATAAGAAGTGATGTCAAGATGTTTCTGCTAGATAGAAGAAGTCATACCTGAAAGATAGGATCACAATGAGATGGTCTTGACACCGTTTCAACAGATGAGTTAACGGCTCCAAATAGATTGTTCCCAAGGCCTCCCATCAAGGTACGTCCAACTAAAAAGATGAAGAACAACCATGAGCAATATGCAAATTAGATCAGCATCATACCACAGCACCATAAGCTAAAAATATTAAGCCATCAGGCAGAGGCAAAAAAATCTAACTAGAGGTAAGAGCACTTGTAAGGTATAAGATACTGTTTTATTATGGTTAAAGGCCATCAGTCGCACAGAATCAACAATTTTAATTGTGCACGTGTTTGAATGCTATGAATTAATCATCATTTCGCACTAGATCAAATCCCAAAAGTAATCAACAATTGGTTAATTTAGGCTAAAAGCCAATCTAAACTGGTTTAGGTCCAACCAACAGCTATCGTTAGAAGCCATAACTTTGTCCATGGTTTGTTTATGGAGTAGAACATATATCCTAACTTTGCACAAGCCAAATGTGTCTAGTAGGCATTTGCAAACCTATCCGTACAATCATATAAACGTTGAGGCATTCTCAAATCTCAATACCTGACGAACATTTTGACCTCAGGAATGCTGCCATTTCTTGTTGCCCTGCGCTTTACCCACACTTTCCTGCAAGGAGAATATGGTTCATAAGCCCTCAAAGTCACAGCAATAAACCTCTGCAAGCAGGGGCGGATCCAACTTGGGACATGGGGGTTCAATTGAACCCCCAAATATTTCGGGGAACAAACAAACTGTTACTTGTATTAAGGTTAAGGCTATGAAATTAAAAGAAGAGCTTCTTCCAGATCTAGAAGAGAAGCTAGGGCTAACGAACGAACGCAAGCAAATTCCAGTCCCGATGGGAGAGAGAGAGAGAGAGAGAGAGAGATGAATCAGAAAGAGGCTGACCAGGTGAGGATCCCCTCCCCTCCCCTGCTCTGCTCGCCAGATGGAGATGGAGATGGAGATGGAGATGGAGAGGGAGATCGCCGCCCCTCCCCTGTTATGTTCAGCCGCGACTCGTCTTGGCGGCGCAAGGAGCGGAGCGGAGCGGAGGAGACAGAGAT
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| CDS seq | ATGGCAGCATTCCTGAGGTCAAAATGTTCGTCAGTTGGACGTACCTTGATGGGAGGCCTTGGGAACAATCTATTTGGAGCCGTTAACTCATCTGTTGAAACGGTGTCAAGACCATCTCATTGTGATCCTATCTTTCAGCAAATCAGAACATTCATCCAGATGAGAACAAACCTAAAGGTGGTAGACAACTCTGGTGCCAAGCGCGTTATGTGCATCCAGTCCTTGAGGGGGAAGAAAGGAGCGAGGCTCGGGGACACTATAATTGGATCTGTCAAGGAAGCACAGCCTCGTGGTAAGGTGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCCGTGCTGCTATGAAGCGAGGACGCAACGATGGCAGCGAGATCCAGTTTGATGACAACGCGATTGTCCTTGTGAACAACAAAGGCGAGCTGATTGGCACTCGTGTATTTGGTCCTGTTCCCCACGAACTCAGGAAAAAGAAGCATCTCAAGATCCTAGCGTTAGCGGAACACATAGTTTGA
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| Protein seq | MAAFLRSKCSSVGRTLMGGLGNNLFGAVNSSVETVSRPSHCDPIFQQIRTFIQMRTNLKVVDNSGAKRVMCIQSLRGKKGARLGDTIIGSVKEAQPRGKVKKGDVVYGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHELRKKKHLKILALAEHIV |
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| Function | 50S ribosomal protein HLP, mitochondrial [UniProtKB/Swiss-Prot:Q93Z17] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0616200 | Os12t0616200-01 | Chr12 | 26139488 | 26141761 | - | irgsp1_rep | ||
| CDS seq | ATGGCAGCATTCCTGAGGTCAAAATGTTCGTCAGTTGGACGTACCTTGATGGGAGGCCTTGGGAACAATCTATTTGGAGCCGTTAACTCATCTGTTGAAACGGTGTCAAGACCATCTCATTGTGATCCTATCTTTCAGCAAATCAGAACATTCATCCAGATGAGAACAAACCTAAAGGTGGTAGACAACTCTGGTGCCAAGCGCGTTATGTGCATCCAGTCCTTGAGGGGGAAGAAAGGAGCGAGGCTCGGGGACACTATAATTGGATCTGTCAAGGAAGCACAGCCTCGTGGTAAGGTGAAGAAAGGAGATGTGGTCTATGGAGTGGTTGTCCGTGCTGCTATGAAGCGAGGACGCAACGATGGCAGCGAGATCCAGTTTGATGACAACGCGATTGTCCTTGTGAACAACAAAGGCGAGCTGATTGGCACTCGTGTATTTGGTCCTGTTCCCCACGAACTCAGGAAAAAGAAGCATCTCAAGATCCTAGCGTTAGCGGAACACATAGTTTGA
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| Protein seq | MAAFLRSKCSSVGRTLMGGLGNNLFGAVNSSVETVSRPSHCDPIFQQIRTFIQMRTNLKVVDNSGAKRVMCIQSLRGKKGARLGDTIIGSVKEAQPRGKVKKGDVVYGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHELRKKKHLKILALAEHIV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0616200 | RBH | 2.771850 | 2.938641 | 16.252258 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g42180 | RBH | 1.836099 | 1.934347 | 4.082354 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020880 | RBH | 4.638744 | 39.260052 | 24.377357 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020980 | RBH | 0.776539 | 8.073978 | 9.716613 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0021320 | RBH | 7.744208 | 48.369938 | 28.091421 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020640 | RBH | 0.153421 | 2.575085 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0020280 | RBH | 26.531158 | 87.594643 | 47.153431 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0351000 | RBH | 20.8253075 | 32.559182 | 93.4941025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0020150 | RBH | 0.785187 | 5.202445 | 4.374029 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0380900 | RBH | 21.362838 | 36.2642615 | 125.564831 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0020400 | RBH | 1.483590 | 0.711523 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020630 | RBH | 0.985096 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0020570 | RBH | 15.816798 | 69.646187 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0020630 | RBH | 2.501479 | 0.0 | 5.027624 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0020820 | RBH | 0.358138 | 33.594769 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G020310 | RBH | 1.968068 | 25.817122 | 9.456817 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0020100 | RBH | 2.841747 | 71.522682 | 32.978813 |
