Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_11g0009850 | OGI:11028800 | 2/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr11:8908828-8911933 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGAGCAATCGACAGCAATATGTGCATTGCTTCTTGTTGAGGCAAAAGGCTGTAGTGATACTTCTGGTTTTGATCCTCGTCTGGTTGAGGAATAAAAATGGTAAAAGAAGTAAATGCAAAGGGGTACGGTATGGGCCCCTGATCCATAGGGATGTATGGAGAACAAGTGAATTAATTAGGTTGATCGACACTTCAGATAGGATATGCACACAACAATTGAGAATGCCCCGTCAGTTATTCTACAGGCTCTGTTCTCGTCTTAAGAACAAGGGACTACTAGTTGACACCTTTCATGTTTCAGTAGAGGAGCAAGTGGCAATGTTTCTGAAGAAGGTTGGACAACATCATTCAGTTCCATCTGTAGGATTCTCATTTTGGCGATCTGGTGAGACAGTGAGTAGGTATTTTCATATTGTGTTGCGGGCCATGTGTGAGTTAGCTCGAGAACTCATTTATGTCAGGTCTACCGATACACATACTAAGATCACCAGCAACCCAAACAAATTCTATCCATATTTTGAGGTAACTCTAAATACCAAGAGACAATAATTCATATTCCATTAACTTTTGTTTATTTCACTCGGATGTTTTTATTTTGTCTGCACTTAGGGCTGTATTGGGGCACTAGACGGCACACACATCAAGGCAAGTGTGCCAGCCAAGAAGGTGGATAGGTTTAGAGGCCGCAAGTCATACCCCACACAGAACGTATTGGCTGCTGTCGACTTTGACCTTAGGTTCACATATATCCTATCAGGTTGGGAGGGGTCAGCTCATGATTCTCTTGTCTTGCAAGATGCATTGTCGCGCCCAAATGGTCTTAAAATACCAGAAGGTAATTAAACATTTTGAAAGAATCGTAATTAGCCTTGTTGTAAGAAGATAACATTAGGCTCATATATGACATGATTGATGGTTGTAGGGAAATATTTTTTGGCTGATGCTGGATATGCTGCTAGGCCGGGTATATTGCCGCCATATCGTCGTGTTCGATATCACCTAAAAGAGTTTCGTGGCCCTCAAGGTCCAAAATGCCCAAAAGAGCTATTCAACTATCGTCATTCTTCACTTCGAACTACAATTGAACGAGCTTTTGGTGCTCTTAAGAACCGCTTCAAGATTCTTATGAATAAGCCATTCATACCCTTGAAAGCCCAAGCAATGGTGGTTATCGCTTGTTGTGCCCTTCATAATTGGATATTGGACGATGGACATGATGAATTTGTCTCCGATGAGGATACGTGGTATGCTCGCCTACCAAGGAGTAGTAACCGTGTCACTGACAAAGGGGCTGATATACGTGAGTGGGCAGCCAAGCGTGACGATATTGCCAATCAGATGTGGAATGATAGAAACAACATAGATGTCCACGATGTTATGACCAGCGAATGAGTTACCAACGTATATTGCTTACAATCTTTGTTTTTTGTATTAACTGACTACCATTGTTCATATGAAGTGTTTTACTTACAATTCTCCTATGATGTATGCAGTATGGGAAATCGTACTGAAGATAATAGCAAGGAAGGTGGCTCTCGTGAAAAGTATATCACTTGGAGTGATGATGCCACTCAGTTCATGCTTGAGTGGTATATATCGCTCCGCAAGGACAAACCTACCACCTTCAAGTGGAGGAAACAACACCACCAGCAGTGTGCTACTGCTTTGAATGACAAGCTTGGACTTAGAGTCAATAGAAGCCAAGTCCATCGGCATTTCAGGCTATGCAAGGAAAAATGGAGTTGGATCTGTGCAGCCTTAGGAAAAAGTGGCTATGGTTTTGATGCAACATCATGCAAATTTAACATTGACCCATCGGAGAAGGAAGCAAACAAACTTGGTGTAAGTTATTCTATGATTGCACACTAGTTTGAGTTATAATTCATACAAGAATTGTTAAGTTTGTTTATTTCTAACCATGCTTCTTCTAATAACAGACAACTAAATACAACTACTTGACTAAGCCTATCAAATTCTTCCATCTCTTTGAAGAATTATTTGTGGGCTGTTCAAAAGCTGATGGCTCTCTTGCGATGGACCAGTTTACTGCTAATACTAGTAGTGATAGTGATGGCAGTGGTAGCATCAAGGAGTTGGAAGAATATACATTTCCACTGCAAGATGGTGGCAATGATTCCGACACAATACCTCGCTATAGTCCGACAACTGATGCCACTTCTTCAGGGCAGAAGCGTAAGTTTGTGAAATCACCTACCAAGAAGATTGTGAAGCATAAAACGAGCCGCCACAAAGCAGAGGAGGATGAGCTGATAGCTAGTATCCTTAGGCTTGCTAACTCTCTTGCATCTGCACAGTCTGTTGCATCTGTTGAAGTGCCCTCTGTAGGAGATCGAAATGCAAGTATTTGGAAGCGCATAGAAGACCTCACCATCCCAGCAAGTGACAAAATTGAACTTGCAATCTTTCTCACCAAGCCAGAACAAGAATGCTTTCGTTCTTATCTGCGAGTTGCAAGTGATGAAAGTTTCCAAGCTTGGGTTATAGATTACTTTGGACGCAAATGTGCTACCGATGGTGGCTATGTCACTCTGTGAATCATTTGCCAGGTGGTGACATTTTGGTTAGGGAGCAATGCATTTTGATAAACCCATGTTACTGTTATATACTTATGATATATGCTGCCACTACCATATAGGGGATGGCAGTGTGAAGTATAAAGTAGGGGTTAGTGCAAACCCATGATGTAATATATGGCACTACTATGTGGGTGATTACGAAGTACTACTATGTAGGGATATGTGCAAACCAAAATGCTGTAATGCATGATGTGTTATTGCTGCACTAGTTATGGAGCTTTGAAGTCTAATTTCAGTCATACAGTATTTCTTTTATATAAACACGCCCAGCTTTGTTGCTGCTATATTTGATACAAGGAGGTTTATTTAAGAGAGAAACAAAGAATGATGTCAAAGAAATCAACACAGCAAACGAGAACATTTAGCTGCCTTTACACATATTCATTTTTCAGGAATTAGCTAGCAGTACCATTAACGGGAGGCAATATAACTACGATCAACAAGAGCTAGCAGTACTGCACATATACACCCGGACCACAAGTCCACAACCCATCATCAAGGGCTAA
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| CDS seq | ATGGAGAGCAATCGACAGCAATATGTGCATTGCTTCTTGTTGAGGCAAAAGGCTGTAGTGATACTTCTGGTTTTGATCCTCGTCTGGTTGAGGAATAAAAATGGTAAAAGAAGTAAATGCAAAGGGGTACGGTATGGGCCCCTGATCCATAGGGATGTATGGAGAACAAGTGAATTAATTAGGTTGATCGACACTTCAGATAGGATATGCACACAACAATTGAGAATGCCCCGTCAGTTATTCTACAGGCTCTGTTCTCGTCTTAAGAACAAGGGACTACTAGTTGACACCTTTCATGTTTCAGTAGAGGAGCAAGTGGCAATGTTTCTGAAGAAGGTTGGACAACATCATTCAGTTCCATCTGTAGGATTCTCATTTTGGCGATCTGGTGAGACAGTGAGTAGGTATTTTCATATTGTGTTGCGGGCCATGTGTGAGTTAGCTCGAGAACTCATTTATGTCAGGTCTACCGATACACATACTAAGATCACCAGCAACCCAAACAAATTCTATCCATATTTTGAGTGTTTTACTTACAATTCTCCTATGATTATGGGAAATCGTACTGAAGATAATAGCAAGGAAGGTGGCTCTCGTGAAAAGTATATCACTTGGAGTGATGATGCCACTCAGTTCATGCTTGAGTGGTATATATCGCTCCGCAAGGACAAACCTACCACCTTCAAGTGGAGGAAACAACACCACCAGCAGTGTGCTACTGCTTTGAATGACAAGCTTGGACTTAGAGTCAATAGAAGCCAAGTCCATCGGCATTTCAGGCTATGCAAGGAAAAATGGAGTTGGATCTGTGCAGCCTTAGGAAAAAGTGGCTATGGTTTTGATGCAACATCATGCAAATTTAACATTGACCCATCGGAGAAGGAAGCAAACAAACTTGGTGAATTAGCTAGCAGTACCATTAACGGGAGGCAATATAACTACGATCAACAAGAGCTAGCAGTACTGCACATATACACCCGGACCACAAGTCCACAACCCATCATCAAGGGCTAA
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| Protein seq | MESNRQQYVHCFLLRQKAVVILLVLILVWLRNKNGKRSKCKGVRYGPLIHRDVWRTSELIRLIDTSDRICTQQLRMPRQLFYRLCSRLKNKGLLVDTFHVSVEEQVAMFLKKVGQHHSVPSVGFSFWRSGETVSRYFHIVLRAMCELARELIYVRSTDTHTKITSNPNKFYPYFECFTYNSPMIMGNRTEDNSKEGGSREKYITWSDDATQFMLEWYISLRKDKPTTFKWRKQHHQQCATALNDKLGLRVNRSQVHRHFRLCKEKWSWICAALGKSGYGFDATSCKFNIDPSEKEANKLGELASSTINGRQYNYDQQELAVLHIYTRTTSPQPIIKG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0009850 | OsARC_11g0009850.01 | Chr11 | 8908828 | 8911933 | + | NAM | ||
| CDS seq | ATGGAGAGCAATCGACAGCAATATGTGCATTGCTTCTTGTTGAGGCAAAAGGCTGTAGTGATACTTCTGGTTTTGATCCTCGTCTGGTTGAGGAATAAAAATGGTAAAAGAAGTAAATGCAAAGGGGTACGGTATGGGCCCCTGATCCATAGGGATGTATGGAGAACAAGTGAATTAATTAGGTTGATCGACACTTCAGATAGGATATGCACACAACAATTGAGAATGCCCCGTCAGTTATTCTACAGGCTCTGTTCTCGTCTTAAGAACAAGGGACTACTAGTTGACACCTTTCATGTTTCAGTAGAGGAGCAAGTGGCAATGTTTCTGAAGAAGGTTGGACAACATCATTCAGTTCCATCTGTAGGATTCTCATTTTGGCGATCTGGTGAGACAGTGAGTAGGTATTTTCATATTGTGTTGCGGGCCATGTGTGAGTTAGCTCGAGAACTCATTTATGTCAGGTCTACCGATACACATACTAAGATCACCAGCAACCCAAACAAATTCTATCCATATTTTGAGTGTTTTACTTACAATTCTCCTATGATTATGGGAAATCGTACTGAAGATAATAGCAAGGAAGGTGGCTCTCGTGAAAAGTATATCACTTGGAGTGATGATGCCACTCAGTTCATGCTTGAGTGGTATATATCGCTCCGCAAGGACAAACCTACCACCTTCAAGTGGAGGAAACAACACCACCAGCAGTGTGCTACTGCTTTGAATGACAAGCTTGGACTTAGAGTCAATAGAAGCCAAGTCCATCGGCATTTCAGGCTATGCAAGGAAAAATGGAGTTGGATCTGTGCAGCCTTAGGAAAAAGTGGCTATGGTTTTGATGCAACATCATGCAAATTTAACATTGACCCATCGGAGAAGGAAGCAAACAAACTTGGTGAATTAGCTAGCAGTACCATTAACGGGAGGCAATATAACTACGATCAACAAGAGCTAGCAGTACTGCACATATACACCCGGACCACAAGTCCACAACCCATCATCAAGGGCTAA
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| Protein seq | MESNRQQYVHCFLLRQKAVVILLVLILVWLRNKNGKRSKCKGVRYGPLIHRDVWRTSELIRLIDTSDRICTQQLRMPRQLFYRLCSRLKNKGLLVDTFHVSVEEQVAMFLKKVGQHHSVPSVGFSFWRSGETVSRYFHIVLRAMCELARELIYVRSTDTHTKITSNPNKFYPYFECFTYNSPMIMGNRTEDNSKEGGSREKYITWSDDATQFMLEWYISLRKDKPTTFKWRKQHHQQCATALNDKLGLRVNRSQVHRHFRLCKEKWSWICAALGKSGYGFDATSCKFNIDPSEKEANKLGELASSTINGRQYNYDQQELAVLHIYTRTTSPQPIIKG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0632200 | SBH | 0.619861 | 0.000000 | 3.164764 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g11820 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0632200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0012690 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0012590 | SBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0012630 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0007140 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0006180 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0152300 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0007090 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0153400 | SBH | 0.0070765 | 0 | 0.161946 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0012660 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0012780 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0001540 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0006390 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005650 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G009060 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0010180 | SBH | 0.0 | 0.0 | 0.0 |
