Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_09g0002200 | OGI:09011970 | 9/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr09:4854514-4854990 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCACGGCCTGCGAAGGAGAGGTGGGGGCTGGCGCGCCCTTGCCGGTGCAGAGACGACAGCCGTGGCGGGAGGCCGGTGACAGTGTGCGATGCCATCGTCGGGACGGTCGGCGACGGCGGCGAGGCAGAGCGGCGCGGGGCTTGGCGGCGACGGCAGCGAAATCCCCCAGATCCGTGCCAACTCGGCCAGATCTGGACGGCAGCTAGCTGTCACGGCTGTGGCGGCGGTAGCAGCTGGCGACGGCGGCGGCTGGCGATGGCGTCTGGCGGCGGCGGCGGCAGCAGCAGCTGGCGTTGGCGACTGCCGATGGCGGTGGCGGTAGCAGCTGCGGTGCCGGCTGGCGGTGGCGGCATCGGCGGACACGGCGTTAGGGCGGCTCCTAGCTGCTTGCTGGTGGACGTTTTGCTGGTGGAGGCCGACTCCTTCCCCTTTGCTGGTGGAGGGCAACGGCGCAGTGGCAGGACGTTTTGCTAG
More
|
||||||||||
| CDS seq | ATGCCACGGCCTGCGAAGGAGAGGTGGGGGCTGGCGCGCCCTTGCCGGTGCAGAGACGACAGCCGTGGCGGGAGGCCGGTGACAGTGTGCGATGCCATCGTCGGGACGGTCGGCGACGGCGGCGAGGCAGAGCGGCGCGGGGCTTGGCGGCGACGGCAGCGAAATCCCCCAGATCCGTGCCAACTCGGCCAGATCTGGACGGCAGCTAGCTGTCACGGCTGTGGCGGCGGTAGCAGCTGGCGACGGCGGCGGCTGGCGATGGCGTCTGGCGGCGGCGGCGGCAGCAGCAGCTGGCGTTGGCGACTGCCGATGGCGGTGGCGGTAGCAGCTGCGGTGCCGGCTGGCGGTGGCGGCATCGGCGGACACGGCGTTAGGGCGGCTCCTAGCTGCTTGCTGGTGGACGTTTTGCTGGTGGAGGCCGACTCCTTCCCCTTTGCTGGTGGAGGGCAACGGCGCAGTGGCAGGACGTTTTGCTAG
More
|
||||||||||
| Protein seq | MPRPAKERWGLARPCRCRDDSRGGRPVTVCDAIVGTVGDGGEAERRGAWRRRQRNPPDPCQLGQIWTAASCHGCGGGSSWRRRRLAMASGGGGGSSSWRWRLPMAVAVAAAVPAGGGGIGGHGVRAAPSCLLVDVLLVEADSFPFAGGGQRRSGRTFC |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_09g0002200 | OsARC_09g0002200.01 | Chr09 | 4854514 | 4854990 | + | NAM | ||
| CDS seq | ATGCCACGGCCTGCGAAGGAGAGGTGGGGGCTGGCGCGCCCTTGCCGGTGCAGAGACGACAGCCGTGGCGGGAGGCCGGTGACAGTGTGCGATGCCATCGTCGGGACGGTCGGCGACGGCGGCGAGGCAGAGCGGCGCGGGGCTTGGCGGCGACGGCAGCGAAATCCCCCAGATCCGTGCCAACTCGGCCAGATCTGGACGGCAGCTAGCTGTCACGGCTGTGGCGGCGGTAGCAGCTGGCGACGGCGGCGGCTGGCGATGGCGTCTGGCGGCGGCGGCGGCAGCAGCAGCTGGCGTTGGCGACTGCCGATGGCGGTGGCGGTAGCAGCTGCGGTGCCGGCTGGCGGTGGCGGCATCGGCGGACACGGCGTTAGGGCGGCTCCTAGCTGCTTGCTGGTGGACGTTTTGCTGGTGGAGGCCGACTCCTTCCCCTTTGCTGGTGGAGGGCAACGGCGCAGTGGCAGGACGTTTTGCTAG
More
|
|||||||
| Protein seq | MPRPAKERWGLARPCRCRDDSRGGRPVTVCDAIVGTVGDGGEAERRGAWRRRQRNPPDPCQLGQIWTAASCHGCGGGSSWRRRRLAMASGGGGGSSSWRWRLPMAVAVAAAVPAGGGGIGGHGVRAAPSCLLVDVLLVEADSFPFAGGGQRRSGRTFC |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g07770 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0002310 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0002310 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0002340 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0002370 | SBH | 0.323691 | 0.000000 | 0.892752 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0067000 | RBH | 0.024341 | 0.019206 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0069300 | RBH | 0 | 0.1226815 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0002310 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0002320 | SBH | 0.072124 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0049000 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0002350 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G002360 | SBH | 0.348032 | 7.182483 | 8.023397 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0002400 | RBH | 0.148439 | 1.943514 | 0.000000 |
