Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_09g0002310 OGI:09011940 | 16/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr09:4575090-4581245
Gene Symbol -
DNA seq

atgagaagcgccgggaccatcagccagcagctcacccgctacgccgcggcgcaggcgctgctcccgggggcgcacctccacgccaacctcctcaagtccggcttcctcgcctcactccgcaaccacctcatctccttctactccaagtgccgccgcccctgctgcgcccgcagggtgttcgacgaaatccctgacccgtgccacgtctcatggtcatccctcgtcacagcctactccaacaacggcctgccccggagcaatccaggccttccacggcatgcgcgcggagggtgtatgctgcaatgagttcgctctccctgttgtgctcaagtgcgtgccggacgcccagctcggtgcgcaggtgcacgccatggcgatggctacggggtttggcagtgatgtcttcgtggcgaacgcgcttgtggccatgtacggtggatttggcttcatggatgatgcgaggagggtgttcgatgaggccagcagcgagaggaatgccgtctcctggaatggcctgatgtcagcgtatgtcaagaatgaccagtgcggcgatgccatccaggtgtttggtgagatggtgtggagtgggattcagcctactgaatttgggttctcttgtgtggtgaacgcctgcacgggttccaggaatatagacgctggaagacaagtgcatgctatggtggtacggatgggctatgaaaaggatgtgttcacggccaatgcattggttgacatgtatgtgaaaatggggcgtgttgatattgcttctgttatttttgagaaaatgcctgattcggatgtggtctcctggaatgctttaatttctgggtgcgtacttaatggtcacgatcaccgtgcgatagagttgttactgcagatgaagtcttcagggctggttcccaacgtgtttatgttgtctagcatcctgaaggcttgtgctggtgctggtgcatttgatttgggtcggcaaatccacgggttcatgatcaaagccaatgcagattcagatgattatataggtgttggtcttgtggatatgtatgcaaagaaccattttttggacgatgcaatgaaggtttttgattggatgtcccatagggatttgattctgtggaatgcactgatatcaggttgttctcatggaggacgacatgatgaggctttctctatcttttacgggttgagaaaggagggtctcgacgtgaataggacaacattggctgctgttctcaagtccacagcaagcttggaggcagccagcgccacaagacaagttcatgctcttgcagagaagataggtttcatatttgacgctcatgttgtcaatgggcttattgattcctattggaagtgcagttgtctcagtgatgcaatcagagtgtttgaagaatgttcttctggtgacattatagctgttacatccatgatcacagcactctcacagtgtgaccatggtgagggtgcaataaagctgttcatggaaatgctaaggaaggggcttgagccagatcctttcgtgctaagtagcctactgaatgcttgtgctagcttatcagcttatgagcaagggaagcaagtccatgctcatctgatcaagcgacagttcatgtcagatgcgtttgcagggaatgctcttgtgtacacttatgctaagtgtggtagcatagaagatgcagagttggctttctccagcctgccagagaggggagttgtctcatggtctgcaatgatcggagggctagcacagcatgggcatgggaagagagcattggaattgtttggcaggatggttgatgaaggcattaatccaaaccacatcaccatgactagcgttctctgtgcctgcaaccatgcagggcttgttgatgaggccaagtggtacttcaattcaatgaaggagatgtttggcattgacaggacggaggaacattactcatgtatgattgatttgcttggccgtgctggtaaactagacgatgcaatggagcttgttaacagcatgccattccaagcaaatacctcagtttggggggcactactaggagcctcaagagtccacaaagacccagaactgggaaagctggcagctgaaaagctcttcatcctagagcctgagaaatccggtacacatgttctgcttgcaaacacttatgcatcttcaggcatgtggaatgaggtggctaaggtgcgaaagctaatgaaagatagtaacatcaagaaggagcctgccatgagctgggttgaggttaaggacaaggtgcatactttcattgttggtgacaagagccacccgatgacaaaagagatatactcaaagctagatgaattgggagatctgatgagcaaagctggttatattccaaatgtagatgttgatctccatgatttagacaggagtgaaaaggagttacttctttctcatcatagtgaaaggctggctgtcgcattcgctttgctcagcactccacctggagcacccattagggtcaagaaaaatctgtgcatatgtagagattgccatatggcatttaagttcatttcaaatattgtttcgagggaaattatcatcagagacataaaccgattccatcatttcagagatgggacatgttcttgtggtgattactggtagaaacatcggaacaggattttttgtagctttttgagaattgtGgtggtcagaaaagcatacacacgctcagagaggcttaacaatttagaaaattttgtacccactgtagcaaccattttagacagttgttggagtattcaataagctatgtggtttctgtagctcaatctacaacacactccacactaagccagaaaggtccaaaattttgttttttctgttgtgttaacgaaggagcagtcctcatgtacatgattttttaaacattcttaattgttataggatagaacaaaatttagctattgcaagtttacaacctggtgtctcttatagtatttacagggaaacgactaccattagtcctgcagctgagataacatcgtttgatggccatatgcctatttcgttatttacaagttcgtacaagagcttcacttttgcatcactgctggagatggtgacaatgaggttattatactacagggctcctctgattctgttggtattcaactcaagtattttatttccattaccctacatgaacttgtattttgttacaggtaactggtaaggcagtttgcttaaaatacaatttactgttcttttgggtgatgttgagaagacagccgcactcaagaacttggacatgatacttCtctcatatatggttggtaaatatttcttgtggtctatgctaagattgcatcatcgttttttttaaaagaaaactatcatgcaggtgttcctgactatttacTttttaatcatacacacgctgtggcctatttttttgtgagattatttccaatattccattgtacttgtttctttgagctattttctaaacctctatgaATacattaacataaactctattatgttaataaaggggaatgctgatattgctttagtaagcctaaattcatgtactgtggttgcaatgaaactggagcaCttggcaagtgtgagcagataagagagaagcataagtttttagacaggtcacgtactaattttaaaattgagaattgttcctcattatCttctagTTATtttttgtgtcgaacgtaaatagctgaaggaaaaggttgacaagttgacaatcttttgtgtaatgtcaaacagctggcttgggaagctattggggagtttctgtccaaaaaattgcaagtttgactattatatggcaaccttggaaggctcttaatttgcgcatgtgcaacaacaatatgaaatgactcctagcattgccacataggttttccactgacatggagagagattaaggtcatctctttactaaacaaatgacaggaggcacaaaatatgatgtcagagagaaaatcttgtggtattgcttagggacaactagttggtataatatactagtgactagtatttattgtgtagctattttcaattctttgtataagtaataagttatctctaatattgtgttttcctgacgtagaggacagtagaaacaactactatctcatccctgtacatgccctgtagctctttacatcttacatttatggaccaccatttaaatgcatgcaaggagtgttgaagaacaagcatgatcactgccattttcttgtaactaagactgcaattctcttgtgaagttgtagctgagtgcccgagtgtttcacatgccattctatttgtcattctgaagacattatttttctactttcataatctcatcaatttcatgagaaattctcttcagatgaaTatttagccattgctaggaagcaccttgcaggctctctgctcaactgattaactatcatttttttctttttttacttgcaagttagagcaggtacaatagcaggctataagccagctgcaaacatattttaagaagataaatgaggagagagaagagcagcaggttatagatttgtacctagctgtagcacggcctccaagacgcagtgtgtatatgataggtgggactaggtattaatagtgtagtatataactattgtatgaatgaactattagattggctatagatgaattggagctagtagttggctatactattaaacttgctcttacagcttctctgtgttagtgcaattgcgatttgtctcatcaagtcctacatgatatttgccatcagaatgcttctgcacttgtttccgaagtacggagaaaataaagagtcacctcttcttgatgaaatcctagtggaatagcttttgctttctattaaactgcttgttggtttggctaattggctaatggaaaatttacccgacgagatgctgaacataaggcatatgatgattttgctttttactagtagtttgtttggctaattggtggcattatgtagtttttgcagcttacttcaatcatccgaaggttaagcagtaattgagaatttgagataaaggtttctttgcgagcttgtacaagagaggggagatttagaactacatgatgaatatttgtattgtcaaaattcttaaggcggagatagtaatattggcacaggtaggaaagatttagcagtaattatattaaggctatgttcggttcaatgggattaaacccccaaggggaacctatccagggagggattgagtggttccctcccatgtcacttaatccctgtgggatgaagtcccttgattttcctaatccctgttttcaaaacgtttgttcggagagggaatggcgcagtcgtgcccccggtcgctctaccccaggggtgacgcgggcggcgattcaagccgcgccgccccctccctccccctgctctccccagcctcgccgccgCccgagcagccgccggcaaagccgggcggaagcaaggaaggcggcggcggggctttccatctccctcgctcatggtcaaggcggctggggaaccgacgtgaccagacgacgggagtGAggcgtcggcgtccagctccgGCgctgtcgagcacggatccggccctctcttggccggatctagtgctcccAccggcgggagtcgtGggggacggcgggatccgccgctatcccgcccggaagcgacgacgccgcggcctgtgaaggagaggtGggggctggcgcgcccttgccggtgcggagacgacagccgtggcgggaggccggtgacagtgtgcgatgccatcgtcgggacggtcggcgacggcagcgaggcagagcggcgcggggcttggcggcgacggcagcgaaatcccccaaatccgtgccaactcggccagatctggacggcagctagctgtcacggctgtggcggcggtagcagctggcaacggcggcggctggcgatggcgtctggcggcggcggcggcggcagcagctggcgttggcgactgccgatggcggcggcagtagcagctgcggtgccggctggcggcggcggcatcggcggacacggcgtcagggcggctcctagctgcttgctggtggacgttttgctggtggaggccgactccttcccctttgctggtggagggcaacggcgcagtggcaggacgttttgctag

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CDS seq

atgagaagcgccgggaccatcagccagcagctcacccgctacgccgcggcgcaggcgctgctcccgggggcgcacctccacgccaacctcctcaagtccggcttcctcgcctcactccgcaaccacctcatctccttctactccaagtgccgccgcccctgctgcgcccgcagggtgttcgacgaaatccctgacccgtgccacgccttccacggcatgcgcgcggagggtgtatgctgcaatgagttcgctctccctgttgtgctcaagtgcgtgccggacgcccagctcggtgcgcaggtgcacgccatggcgatggctacggggtttggcagtgatgtcttcgtggcgaacgcgcttgtggccatgtacggtggatttggcttcatggatgatgcgaggagggtgttcgatgaggccagcagcgagaggaatgccgtctcctggaatggcctgatgtcagcgtatgtcaagaatgaccagtgcggcgatgccatccaggtgtttggtgagatggtgtggagtgggattcagcctactgaatttgggttctcttgtgtggtgaacgcctgcacgggttccaggaatatagacgctggaagacaagtgcatgctatggtggtacggatgggctatgaaaaggatgtgttcacggccaatgcattggttgacatgtatgtgaaaatggggcgtgttgatattgcttctgttatttttgagaaaatgcctgattcggatgtggtctcctggaatgctttaatttctgggtgcgtacttaatggtcacgatcaccgtgcgatagagttgttactgcagatgaagtcttcagggctggttcccaacgtgtttatgttgtctagcatcctgaaggcttgtgctggtgctggtgcatttgatttgggtcggcaaatccacgggttcatgatcaaagccaatgcagattcagatgattatataggtgttggtcttgtggatatgtatgcaaagaaccattttttggacgatgcaatgaaggtttttgattggatgtcccatagggatttgattctgtggaatgcactgatatcaggttgttctcatggaggacgacatgatgaggctttctctatcttttacgggttgagaaaggagggtctcgacgtgaataggacaacattggctgctgttctcaagtccacagcaagcttggaggcagccagcgccacaagacaagttcatgctcttgcagagaagataggtttcatatttgacgctcatgttgtcaatgggcttattgattcctattggaagtgcagttgtctcagtgatgcaatcagagtgtttgaagaatgttcttctggtgacattatagctgttacatccatgatcacagcactctcacagtgtgaccatggtgagggtgcaataaagctgttcatggaaatgctaaggaaggggcttgagccagatcctttcgtgctaagtagcctactgaatgcttgtgctagcttatcagcttatgagcaagggaagcaagtccatgctcatctgatcaagcgacagttcatgtcagatgcgtttgcagggaatgctcttgtgtacacttatgctaagtgtggtagcatagaagatgcagagttggctttctccagcctgccagagaggggagttgtctcatggtctgcaatgatcggagggctagcacagcatgggcatgggaagagagcattggaattgtttggcaggatggttgatgaaggcattaatccaaaccacatcaccatgactagcgttctctgtgcctgcaaccatgcagggcttgttgatgaggccaagtgtttgcttaaaatacaatttactgttcttttgggtgatgttgagaagacagccgcactcaagaacttggacatgatacttCtctcatatatggttgacgacgggagtGAggcgtcggcgtccagctccgGCgctgtcgagcacggatccggccctctcttggccggatctagtgctcccAccggcgggagtcgtGggggacggcgggatccgccgctatcccgcccggaagcgacgacgccgcggcctgtgaaggagaggtGggggctggcgcgcccttgccggtgcggagacgacagccgtggcgggaggccggtgacagtgtgcgatgccatcgtcgggacggtcggcgacggcagcgaggcagagcggcgcggggcttggcggcgacggcagcgaaatcccccaaatccgtgccaactcggccagatctggacggcagctagctgtcacggctgtggcggcggtagcagctggcaacggcggcggctggcgatggcgtctggcggcggcggcggcggcagcagctggcgttggcgactgccgatggcggcggcagtagcagctgcggtgccggctggcggcggcggcatcggcggacacggcgtcagggcggctcctagctgcttgctggtggacgttttgctggtggaggccgactccttcccctttgctggtggagggcaacggcgcagtggcaggacgttttgctag

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Protein seq

MRSAGTISQQLTRYAAAQALLPGAHLHANLLKSGFLASLRNHLISFYSKCRRPCCARRVFDEIPDPCHAFHGMRAEGVCCNEFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEASSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLDVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKCLLKIQFTVLLGDVEKTAALKNLDMILLSYMVDDGSEASASSSGAVEHGSGPLLAGSSAPTGGSRGGRRDPPLSRPEATTPRPVKERWGLARPCRCGDDSRGGRPVTVCDAIVGTVGDGSEAERRGAWRRRQRNPPNPCQLGQIWTAASCHGCGGGSSWQRRRLAMASGGGGGGSSWRWRLPMAAAVAAAVPAGGGGIGGHGVRAAPSCLLVDVLLVEADSFPFAGGGQRRSGRTFC

Function Pentatricopeptide repeat-containing protein At4g39530 [UniProtKB/Swiss-Prot:Q9SVA5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_09g0002310 OsLima_09g0002310.01 Chr09 4575090 4581245 + NAM
CDS seq

atgagaagcgccgggaccatcagccagcagctcacccgctacgccgcggcgcaggcgctgctcccgggggcgcacctccacgccaacctcctcaagtccggcttcctcgcctcactccgcaaccacctcatctccttctactccaagtgccgccgcccctgctgcgcccgcagggtgttcgacgaaatccctgacccgtgccacgccttccacggcatgcgcgcggagggtgtatgctgcaatgagttcgctctccctgttgtgctcaagtgcgtgccggacgcccagctcggtgcgcaggtgcacgccatggcgatggctacggggtttggcagtgatgtcttcgtggcgaacgcgcttgtggccatgtacggtggatttggcttcatggatgatgcgaggagggtgttcgatgaggccagcagcgagaggaatgccgtctcctggaatggcctgatgtcagcgtatgtcaagaatgaccagtgcggcgatgccatccaggtgtttggtgagatggtgtggagtgggattcagcctactgaatttgggttctcttgtgtggtgaacgcctgcacgggttccaggaatatagacgctggaagacaagtgcatgctatggtggtacggatgggctatgaaaaggatgtgttcacggccaatgcattggttgacatgtatgtgaaaatggggcgtgttgatattgcttctgttatttttgagaaaatgcctgattcggatgtggtctcctggaatgctttaatttctgggtgcgtacttaatggtcacgatcaccgtgcgatagagttgttactgcagatgaagtcttcagggctggttcccaacgtgtttatgttgtctagcatcctgaaggcttgtgctggtgctggtgcatttgatttgggtcggcaaatccacgggttcatgatcaaagccaatgcagattcagatgattatataggtgttggtcttgtggatatgtatgcaaagaaccattttttggacgatgcaatgaaggtttttgattggatgtcccatagggatttgattctgtggaatgcactgatatcaggttgttctcatggaggacgacatgatgaggctttctctatcttttacgggttgagaaaggagggtctcgacgtgaataggacaacattggctgctgttctcaagtccacagcaagcttggaggcagccagcgccacaagacaagttcatgctcttgcagagaagataggtttcatatttgacgctcatgttgtcaatgggcttattgattcctattggaagtgcagttgtctcagtgatgcaatcagagtgtttgaagaatgttcttctggtgacattatagctgttacatccatgatcacagcactctcacagtgtgaccatggtgagggtgcaataaagctgttcatggaaatgctaaggaaggggcttgagccagatcctttcgtgctaagtagcctactgaatgcttgtgctagcttatcagcttatgagcaagggaagcaagtccatgctcatctgatcaagcgacagttcatgtcagatgcgtttgcagggaatgctcttgtgtacacttatgctaagtgtggtagcatagaagatgcagagttggctttctccagcctgccagagaggggagttgtctcatggtctgcaatgatcggagggctagcacagcatgggcatgggaagagagcattggaattgtttggcaggatggttgatgaaggcattaatccaaaccacatcaccatgactagcgttctctgtgcctgcaaccatgcagggcttgttgatgaggccaagtgtttgcttaaaatacaatttactgttcttttgggtgatgttgagaagacagccgcactcaagaacttggacatgatacttCtctcatatatggttgacgacgggagtGAggcgtcggcgtccagctccgGCgctgtcgagcacggatccggccctctcttggccggatctagtgctcccAccggcgggagtcgtGggggacggcgggatccgccgctatcccgcccggaagcgacgacgccgcggcctgtgaaggagaggtGggggctggcgcgcccttgccggtgcggagacgacagccgtggcgggaggccggtgacagtgtgcgatgccatcgtcgggacggtcggcgacggcagcgaggcagagcggcgcggggcttggcggcgacggcagcgaaatcccccaaatccgtgccaactcggccagatctggacggcagctagctgtcacggctgtggcggcggtagcagctggcaacggcggcggctggcgatggcgtctggcggcggcggcggcggcagcagctggcgttggcgactgccgatggcggcggcagtagcagctgcggtgccggctggcggcggcggcatcggcggacacggcgtcagggcggctcctagctgcttgctggtggacgttttgctggtggaggccgactccttcccctttgctggtggagggcaacggcgcagtggcaggacgttttgctag

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Protein seq

MRSAGTISQQLTRYAAAQALLPGAHLHANLLKSGFLASLRNHLISFYSKCRRPCCARRVFDEIPDPCHAFHGMRAEGVCCNEFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEASSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLDVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKCLLKIQFTVLLGDVEKTAALKNLDMILLSYMVDDGSEASASSSGAVEHGSGPLLAGSSAPTGGSRGGRRDPPLSRPEATTPRPVKERWGLARPCRCGDDSRGGRPVTVCDAIVGTVGDGSEAERRGAWRRRQRNPPNPCQLGQIWTAASCHGCGGGSSWQRRRLAMASGGGGGGSSWRWRLPMAAAVAAAVPAGGGGIGGHGVRAAPSCLLVDVLLVEADSFPFAGGGQRRSGRTFC

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.000000 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_09g0251500 RBH 0.076152 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os09g07780 RBH 0.051482 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os09g0251500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_09g0002320 RBH 0.072605 0.987813 0.000000
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_09g0002320 RBH 0.0 0.000000 0.140020
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_09g0002350 RBH 0.211102 1.537561 0.057456
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_09g0002190 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_09g0002370 RBH 0.323691 0.000000 0.892752
Minghui 63 | MH63RS3 | HZAU OsMH63_09G0066900 RBH 0 0 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_09g0002310 RBH 0.0 0.000000 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_09G0069400 RBH 0.436419 0.860868 3.2076215
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_09g0002320 RBH 0.072124 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_09g0002410 RBH 0.0 2.617820 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_09g0002270 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_09g0002350 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_09G002360 RBH 0.348032 7.182483 8.023397
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_09g0002400 RBH 0.148439 1.943514 0.000000
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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