Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_08g0021730 | OGI:08072880 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr08:26325947-26328795 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGGCCAGCCGGCCGGCGCACGCGCGGCATATGGAGAGCAATGCGGCACGCGCCGCCGCCGCCGCCGCCGGCGAGGGAGTCGGAGACCATGACGACGACGGCGAGGAGGAGGAGGAGGAGGAGAAGTGGCGGGAGGCGCTCGCCGCCGCCTGGGGCCAGAGCAGGGCGAAGCGGGAGGCGATCCGGGCGCGCTACGCCGCCGTCAAGGACATGATACGCGGTAAGTGTGCGGTCGCCGTCGCGCGTCGCTTGCTGCGTCTCTCTCTCTGCTTCTACTTTGAGTTTCTCTTGATTTTTGTTTAATCTGACTGATGGCGATGGCGATTGGTACCGTGTGCGAACGTGCGCGCGGTAATTAATTAACGGCAGCGGAGAAGGACGGCGCCGACATGCGCCGGCTCGGCGTCGCCATGGGCGAGATTAAGCAGCTTCACCACAAAGGTTTTGGCTCCCTGCGTTCAGCTCATCCTCCTCTTTGCTTTTGCTCTGCGCTCGTGTTCATTAGTCATTAATCTAGTCCCCTCGTGTTCATGTGCCCGTTGTACATTTCGTGTGATTAATGATTAATCTGGATGAGGGAAAATAAAATAATTTGTTAGCAAATTAATTTACTCTTCTCATGTAGTCAAACTTAACAAACTTTGGCGTCAATATGCACACAATACTCTGAGAATGGCTATGCCAAATTTGCAAAGGAATTTTTTTTTTGTAGCATTGCGTTTCACTAGTTTTCATGACATATAATGAGAAAAATCATTGGGCTATATGTCGATGTAGCCTGTCGATCCTAAATGATTAAGTAATTTCAGTCCTGGCCTTTCTTAGAAGATGATAAGTTTCTTAGTTGGGCACATGTATTTGCGCATGCATGTGTGGACTGCTCGAATTTATGGAGAGGAAAACAATCACTTCTTTAATTAATTGTACACTTGATTAATTAATTGATTGTCATTTCATCATATTTGCACCTGAAAAAAGAATCTGATATGTCCAACATGCGTAATTGCGTATTACAATGTACTCTATCTACTTGCTTGTTAACCAATTACCAGTGCAAAGGCCAAAGGAACAAGTCGCAGATGGTGAAGCTCTGCTGGAGCTCGTCAATTCCCTGGCCATCACCGCCAAATCCAAGAAGAAAGATGGACCTACCCCTTCAGAGTTCGTCACATCACTGCTGACGAAGTTTGGTGTCAGAGCTTCTCTCTTGGATGCTTCCATCGAGTCTTTCTCTTGTTCTGATCTTGGCGCCATGGCGTCTCCATTGTTCATGACAGCAACTGGGTGCCAAACAATGTAGGGTTCTGTTTCCCCTGTGACATGAAAATGTTGCAAGAATTGATCGATCTTTTGGTTTGTGTGTTTATGTTCAGTTGCTCATGAAATTCTTGTAGGAATGGTGCTTTGAATCTTGCCATCGAGGAACGGAGGAAGCGTGTCGCTAGAAGACTATTTGACCGGTTTCCTAGCAAACCTGCAGGGGTGCGTTTCATCATTCCTGCTTCTGAAAACTTTAGCTATTCGCTTCTGATTTAACAAATATAAAAGCAAGGTTCTCGAGCCATTTGCTTAGGTGAAAAGATTATCCTTATATTTAGTATTTTAGTTTTTTTTGCTGACACCTTATTAATCAGCAATGGCTAAAGTGTTCTTGCAGTTTACTGAACTATTTATATTTGAACATGCTTTTGCATAAATGAATGAGTTCAATGTGTCAGATGCTAACTTTGCTCAATTGCGAGTAGGCATTGGCACACCTAGACGTATATATGTTTATCATTGATCCCTTTTCGATATGTTTTTTTTTTTTTACTTCTGCCATGTTTAATAAGTTTTCTTCCAAGATTTGAAATCGCACTTACTTTCCAGCTTTACGAGACCACACCAGATCTAGATGAAAGGAATGATACTGACAAGAACATGGCTGTCATGTTCAAACTCTTGAGGAAGAACAAATGTGTGAAGCTGGAAAATCTCATCCTAAACCGGCAATCTTTCGCACAGACTGTCGAGAACATATTTGCTCTCTCGTTTCTTGTCAAGGATGGAAGAGTGGAGATAGATGTTGATGATAAGGGAAACCATTTTGTCGGTGAGTGCTCCTTTGATGATCCACCGACACAAATTTCAGTTTGATTGTTCAAATTGTAAATCAAAGTAGTAATGCTCATGAATTAGTAGTGATTTGTGTCTTTCATGTTTGCTGTGCAGTGCCACGGAATGCTCCGGCAGCTGAACTGATAACCTCAAGGGAAGTGATCAACAGCCAATATGTATTCCGATTTGATACCAAGGATTGGAAGGTAAAATACTTACATATTTTTCCCTATTCTAGATGGATAAATCTTGAGCTTGATCTATTATTTCTCCCATCTGTATGTTTTCTCCTTTTCTTTTTTTTTATCATTTTGCAATTTTTGCTCATTTACAGATAATGGAAGGCGTTGTGGAGCCTGGAGATGAGCTAATGCCTCATAGACAAAACAACATTGGAGAACACTACAATAATGCAAAATCATATTCAGCTTCAGAACCACAGAGAAAACGAGATGAATTTGCTCAGGGAGAGGGAATGGATGAGACACTCATCAAGCCTTGCGCTGAAGATGTCATCCTGAAGAGGAAGAGGAGATCAGAAGCAGAGAGCTTGAAACATTGGTTTTCTTCATGCAAATGGCAATGATCATGTATAATTTTAGGGTTAGTTCACTGGTAGCAAAGCAGATTAAGCACGCTTTTGGCATCTCTGCAAGAAATTGTTTAAAAAATACTAAAACACAAGTAGGCATTAACAGCTTCTGTTTCTTCTATTATTAGGACTTAGAAGTTTAATTTGACAATGTTGG
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| CDS seq | ATGGAGGCCAGCCGGCCGGCGCACGCGCGGCATATGGAGAGCAATGCGGCACGCGCCGCCGCCGCCGCCGCCGGCGAGGGAGTCGGAGACCATGACGACGACGGCGAGGAGGAGGAGGAGGAGGAGAAGTGGCGGGAGGCGCTCGCCGCCGCCTGGGGCCAGAGCAGGGCGAAGCGGGAGGCGATCCGGGCGCGCTACGCCGCCGTCAAGGACATGATACGCGCGGAGAAGGACGGCGCCGACATGCGCCGGCTCGGCGTCGCCATGGGCGAGATTAAGCAGCTTCACCACAAAGTGCAAAGGCCAAAGGAACAAGTCGCAGATGGTGAAGCTCTGCTGGAGCTCGTCAATTCCCTGGCCATCACCGCCAAATCCAAGAAGAAAGATGGACCTACCCCTTCAGAGTTCGTCACATCACTGCTGACGAAGTTTGGTGTCAGAGCTTCTCTCTTGGATGCTTCCATCGAGTCTTTCTCTTGTTCTGATCTTGGCGCCATGGCGTCTCCATTGTTCATGACAGCAACTGGGTGCCAAACAATGAATGGTGCTTTGAATCTTGCCATCGAGGAACGGAGGAAGCGTGTCGCTAGAAGACTATTTGACCGGTTTCCTAGCAAACCTGCAGGGCTTTACGAGACCACACCAGATCTAGATGAAAGGAATGATACTGACAAGAACATGGCTGTCATGTTCAAACTCTTGAGGAAGAACAAATGTGTGAAGCTGGAAAATCTCATCCTAAACCGGCAATCTTTCGCACAGACTGTCGAGAACATATTTGCTCTCTCGTTTCTTGTCAAGGATGGAAGAGTGGAGATAGATGTTGATGATAAGGGAAACCATTTTGTCGTGCCACGGAATGCTCCGGCAGCTGAACTGATAACCTCAAGGGAAGTGATCAACAGCCAATATGTATTCCGATTTGATACCAAGGATTGGAAGATAATGGAAGGCGTTGTGGAGCCTGGAGATGAGCTAATGCCTCATAGACAAAACAACATTGGAGAACACTACAATAATGCAAAATCATATTCAGCTTCAGAACCACAGAGAAAACGAGATGAATTTGCTCAGGGAGAGGGAATGGATGAGACACTCATCAAGCCTTGCGCTGAAGATGTCATCCTGAAGAGGAAGAGGAGATCAGAAGCAGAGAGCTTGAAACATTGGTTTTCTTCATGCAAATGGCAATGA
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| Protein seq | MEASRPAHARHMESNAARAAAAAAGEGVGDHDDDGEEEEEEEKWREALAAAWGQSRAKREAIRARYAAVKDMIRAEKDGADMRRLGVAMGEIKQLHHKVQRPKEQVADGEALLELVNSLAITAKSKKKDGPTPSEFVTSLLTKFGVRASLLDASIESFSCSDLGAMASPLFMTATGCQTMNGALNLAIEERRKRVARRLFDRFPSKPAGLYETTPDLDERNDTDKNMAVMFKLLRKNKCVKLENLILNRQSFAQTVENIFALSFLVKDGRVEIDVDDKGNHFVVPRNAPAAELITSREVINSQYVFRFDTKDWKIMEGVVEPGDELMPHRQNNIGEHYNNAKSYSASEPQRKRDEFAQGEGMDETLIKPCAEDVILKRKRRSEAESLKHWFSSCKWQ |
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| Function | Non-structural maintenance of chromosomes element 4 homolog B [UniProtKB/Swiss-Prot:F4JET1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_08g0021730 | OsARC_08g0021730.01 | Chr08 | 26325947 | 26328795 | + | NAM | ||
| CDS seq | ATGGAGGCCAGCCGGCCGGCGCACGCGCGGCATATGGAGAGCAATGCGGCACGCGCCGCCGCCGCCGCCGCCGGCGAGGGAGTCGGAGACCATGACGACGACGGCGAGGAGGAGGAGGAGGAGGAGAAGTGGCGGGAGGCGCTCGCCGCCGCCTGGGGCCAGAGCAGGGCGAAGCGGGAGGCGATCCGGGCGCGCTACGCCGCCGTCAAGGACATGATACGCGCGGAGAAGGACGGCGCCGACATGCGCCGGCTCGGCGTCGCCATGGGCGAGATTAAGCAGCTTCACCACAAAGTGCAAAGGCCAAAGGAACAAGTCGCAGATGGTGAAGCTCTGCTGGAGCTCGTCAATTCCCTGGCCATCACCGCCAAATCCAAGAAGAAAGATGGACCTACCCCTTCAGAGTTCGTCACATCACTGCTGACGAAGTTTGGTGTCAGAGCTTCTCTCTTGGATGCTTCCATCGAGTCTTTCTCTTGTTCTGATCTTGGCGCCATGGCGTCTCCATTGTTCATGACAGCAACTGGGTGCCAAACAATGAATGGTGCTTTGAATCTTGCCATCGAGGAACGGAGGAAGCGTGTCGCTAGAAGACTATTTGACCGGTTTCCTAGCAAACCTGCAGGGCTTTACGAGACCACACCAGATCTAGATGAAAGGAATGATACTGACAAGAACATGGCTGTCATGTTCAAACTCTTGAGGAAGAACAAATGTGTGAAGCTGGAAAATCTCATCCTAAACCGGCAATCTTTCGCACAGACTGTCGAGAACATATTTGCTCTCTCGTTTCTTGTCAAGGATGGAAGAGTGGAGATAGATGTTGATGATAAGGGAAACCATTTTGTCGTGCCACGGAATGCTCCGGCAGCTGAACTGATAACCTCAAGGGAAGTGATCAACAGCCAATATGTATTCCGATTTGATACCAAGGATTGGAAGATAATGGAAGGCGTTGTGGAGCCTGGAGATGAGCTAATGCCTCATAGACAAAACAACATTGGAGAACACTACAATAATGCAAAATCATATTCAGCTTCAGAACCACAGAGAAAACGAGATGAATTTGCTCAGGGAGAGGGAATGGATGAGACACTCATCAAGCCTTGCGCTGAAGATGTCATCCTGAAGAGGAAGAGGAGATCAGAAGCAGAGAGCTTGAAACATTGGTTTTCTTCATGCAAATGGCAATGA
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| Protein seq | MEASRPAHARHMESNAARAAAAAAGEGVGDHDDDGEEEEEEEKWREALAAAWGQSRAKREAIRARYAAVKDMIRAEKDGADMRRLGVAMGEIKQLHHKVQRPKEQVADGEALLELVNSLAITAKSKKKDGPTPSEFVTSLLTKFGVRASLLDASIESFSCSDLGAMASPLFMTATGCQTMNGALNLAIEERRKRVARRLFDRFPSKPAGLYETTPDLDERNDTDKNMAVMFKLLRKNKCVKLENLILNRQSFAQTVENIFALSFLVKDGRVEIDVDDKGNHFVVPRNAPAAELITSREVINSQYVFRFDTKDWKIMEGVVEPGDELMPHRQNNIGEHYNNAKSYSASEPQRKRDEFAQGEGMDETLIKPCAEDVILKRKRRSEAESLKHWFSSCKWQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0510900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g40010 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0510900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0021770 | RBH | 0.0 | 0.0 | 0.467360 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0021660 | RBH | 0.0 | 0.0 | 0.234329 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0021540 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0021590 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0405000 | RBH | 0.426327 | 0.0078265 | 0.430354 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0021470 | RBH | 0.0 | 0.0 | 0.179936 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0424600 | RBH | 0.33567 | 0 | 2.957449 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0020810 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0021110 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0020930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0021780 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0021130 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G021270 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0021450 | SBH | 0.0 | 0.0 | 0.000000 |
