Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_08g0005600 | OGI:06012140 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr08:4893384-4894344 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGACGCCGTCGGCGGCGGGAAGGTGAAGAAGGCAGCGAGCGAGAGGAAGGCCAGCGGGCCGAGGAAGAAGGCGGTGACGCGCTTCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGTATCGGGCGCTACCTCAAGAAAAGCCAGCCGGTCGATCTCCTCTCCGCCGCTCCTTCCCCGTCGGCCGCGCCGACCCTCTTCCCCACCGTGTCGGTGACGCTGCTGACCCTCTTTCCCACCGACGCCACCGACCCTCTTCCGTACCACGTCGGTGACGCCGCCGCCGCAGCCGCATCGGCCCTCCTCTCCGCGTCAGTGATGATGGCCACCGTCACCGACTGCACGAGGGGGACGGGGAGGCCGGCGAGCTCGCACCGCCCTGAGCCCGCGCGCCGCCACCCGGGAGCCACCGTCGCCGGCCGCACCACCCTTTGGCCGCGCGCGCCGCTGCCCGTGCGAGAGCAGAGAGCGAGAGGAAGGAGAGAAATAGAGAAAGAGAGAGGGTGCTGACGTGGTCTCCATAACATGTGGGGCCCACGTGGGTCCCACGCTAAGTCAGCCGCCACGCGGGATAAAACCAGGGTCAAAACTACCGAGGGGCCTATTGTGACCAGTTTTGTAAGTTGGGGGACGCCGGATGTCCGGTTTTGTGGTTGAGGGACGATTTTGTATATGGCTAACAAGTTGAGGGACCTTGCGTGTACTTTTTCCAGCGAGATATAGGCGTTAGGCCCATAAGGTCAACAAAATGGGCTTTAAATGAGGAAAAGTTCGGCCCAAATTTGTTTATCTACGCTTCTGAAACGAATTTGTCGAGTTGGCTCGAAATGTGCATTTCAAACGGTTTGTTCAAAAATATCCCGAAATTAGAGAAAAGTTGACACCTCGCTAGGCTTGAATTTCACTGGCCAGTTAAGATTGTGAACCTGTAAACAATAGAACAATAGTTTCGCTCACTTGA
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| CDS seq | ATGGACGCCGTCGGCGGCGGGAAGGTGAAGAAGGCAGCGAGCGAGAGGAAGGCCAGCGGGCCGAGGAAGAAGGCGGTGACGCGCTTCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGTATCGGGCGCTACCTCAAGAAAAGCCAGCCGGTCGATCTCCTCTCCGCCGCTCCTTCCCCAACAATAGTTTCGCTCACTTGA |
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| Protein seq | MDAVGGGKVKKAASERKASGPRKKAVTRFVKAGLQFPVGRIGRYLKKSQPVDLLSAAPSPTIVSLT |
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| Function | Histone H2A [UniProtKB/Swiss-Prot:Q9M531] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_08g0005600 | OsARC_08g0005600.01 | Chr08 | 4893384 | 4894344 | + | NAM | ||
| CDS seq | ATGGACGCCGTCGGCGGCGGGAAGGTGAAGAAGGCAGCGAGCGAGAGGAAGGCCAGCGGGCCGAGGAAGAAGGCGGTGACGCGCTTCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGTATCGGGCGCTACCTCAAGAAAAGCCAGCCGGTCGATCTCCTCTCCGCCGCTCCTTCCCCAACAATAGTTTCGCTCACTTGA
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| Protein seq | MDAVGGGKVKKAASERKASGPRKKAVTRFVKAGLQFPVGRIGRYLKKSQPVDLLSAAPSPTIVSLT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0250300 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0250300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0010020 | SBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0009900 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0075300 | RBH | 0.041774 | 0.0637565 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0005260 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0005360 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005250 | RBH | 0.0 | 0.0 | 0.0 |
