Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_07g0028550 | OGI:07080610 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr07:29292377-29294232 | ||||||||
| Gene Symbol | RLCK243, OsRLCK243, RLCK236, OsRLCK236 | ||||||||||
| DNA seq | ATGAAGAAGAAGAAGAAGAAGTCGCCGCCTCAGATCCCACCGGCCTCAGGTGATCCGTACCTGCCCCTCGGTCGCTTCTTTCTTTCtttctttctcgcagagagcgtattgccttacctggttaggttgggtggtgattagctagaaattaaaaaaaaaaagaacgggaagtcgtcaattgttccttcctgttgaaaagattttaatctgcttccaaccaatagagaaatttcgtatgaatgaatatataattaagcagggtttgggtttttctgacacaaggtgaggtttgtttgtttctccagaaagagataacccaccaaacctggcctcatcgacagtgatgaagcaggatcaggattcgtttcaattagctgctaacgaggacatccttgtgagcaatggatcatccgagaaccgccgcattgcagctcggaccttcacctttagggagctcgctgcggccacaagcaacttcagggtcgattgcctgctcggtgagggcggttttggaagagtgtacaaaggctatttggagactgtcgaccaggctagtaacttatactccgcttcttgctaccatactgcaaatttctgtttaatcaaactagaatctctgcaactgactgtatgagatgaaatgaaatgctccatatactaaattatttccttcagcttccatggagcagttccatccattattaacatgaattaatgcgctttataaccatcataggttgtcgcaataaagcagctcgatcgcaacggactgcaaggcaacagggagtttcttgttgaagttcttatgctcagcatgctgcaccacccaaatcttgttaaccttattggatattgtgccgatggtgatcagaggcttttagtttatgagtatatgccattaggttctttggaagaccatcttcacggtatgccactgaaaaaccttaattggatcactgcttgctttgctactggatgattcatgatgtgtgtgctcacaactagattttgttttacccagatcctccaccaggcaagtcacggcttgattggaatacaaggatgaagatagctgctggtgcagcgaagggtttggaatatttgcatgacaaagccaatcctccagtcatataccgagatttgaagtgttcaaatatcttgcttggggagggatatcacccaaaattgtctgactttggattggcaaagctcggcccaattggcgataaatcccatgtttccactagagtgatgggtacatatggatactgtgctcctgagtatgctatgactggccagctgactctcaagtcagatgtttatagttttggtgttgttctgttggagatcattacaggacgaagagctatcgacaacacccgagcagcaggggagcaaaatcttgttgcatgggtaaggcggcaagcttcttctttatagcggcaactggcaagcttctcttctaaatagtgttgctaaaaaacctaaatgaaatatgccagtatcaatctgaataggttctagtatggttgattggttgtttatccaaaggagtaatctgtttccatccattcatatttggtggtgtacaatttcaggcccggcccttgttcaaggacaggaggaagttcccccagatggcagatccagcgcttcatggtcagtatccatcgagaggattgtaccaggccttggctgttgctgcgatgtgtgtccaagagcaaccgaccatgagacccctgatcggggatgttgttacagctctcgcttaccttgcctcccagacttatgatccagaggcacatggcgtccatcacacgtcacgtttgatgtctcccggcacacaaggtgtatga
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| CDS seq | ATGAAGAAGAAGAAGAAGAAGTCGCCGCCTCAGATCCCACCGGCCTCAGaaagagataacccaccaaacctggcctcatcgacagtgatgaagcaggatcaggattcgtttcaattagctgctaacgaggacatccttgtgagcaatggatcatccgagaaccgccgcattgcagctcggaccttcacctttagggagctcgctgcggccacaagcaacttcagggtcgattgcctgctcggtgagggcggttttggaagagtgtacaaaggctatttggagactgtcgaccaggttgtcgcaataaagcagctcgatcgcaacggactgcaaggcaacagggagtttcttgttgaagttcttatgctcagcatgctgcaccacccaaatcttgttaaccttattggatattgtgccgatggtgatcagaggcttttagtttatgagtatatgccattaggttctttggaagaccatcttcacgatcctccaccaggcaagtcacggcttgattggaatacaaggatgaagatagctgctggtgcagcgaagggtttggaatatttgcatgacaaagccaatcctccagtcatataccgagatttgaagtgttcaaatatcttgcttggggagggatatcacccaaaattgtctgactttggattggcaaagctcggcccaattggcgataaatcccatgtttccactagagtgatgggtacatatggatactgtgctcctgagtatgctatgactggccagctgactctcaagtcagatgtttatagttttggtgttgttctgttggagatcattacaggacgaagagctatcgacaacacccgagcagcaggggagcaaaatcttgttgcatgggcccggcccttgttcaaggacaggaggaagttcccccagatggcagatccagcgcttcatggtcagtatccatcgagaggattgtaccaggccttggctgttgctgcgatgtgtgtccaagagcaaccgaccatgagacccctgatcggggatgttgttacagctctcgcttaccttgcctcccagacttatgatccagaggcacatggcgtccatcacacgtcacgtttgatgtctcccggcacacaaggtgtatga
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| Protein seq | MKKKKKKSPPQIPPASERDNPPNLASSTVMKQDQDSFQLAANEDILVSNGSSENRRIAARTFTFRELAAATSNFRVDCLLGEGGFGRVYKGYLETVDQVVAIKQLDRNGLQGNREFLVEVLMLSMLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDPPPGKSRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPIGDKSHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRRAIDNTRAAGEQNLVAWARPLFKDRRKFPQMADPALHGQYPSRGLYQALAVAAMCVQEQPTMRPLIGDVVTALAYLASQTYDPEAHGVHHTSRLMSPGTQGV |
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| Function | Serine/threonine-protein kinase PBL27 [UniProtKB/Swiss-Prot:Q1PDV6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0028550 | OsARC_07g0028550.01 | Chr07 | 29292377 | 29294232 | + | NAM | ||
| CDS seq | ATGAAGAAGAAGAAGAAGAAGTCGCCGCCTCAGATCCCACCGGCCTCAGaaagagataacccaccaaacctggcctcatcgacagtgatgaagcaggatcaggattcgtttcaattagctgctaacgaggacatccttgtgagcaatggatcatccgagaaccgccgcattgcagctcggaccttcacctttagggagctcgctgcggccacaagcaacttcagggtcgattgcctgctcggtgagggcggttttggaagagtgtacaaaggctatttggagactgtcgaccaggttgtcgcaataaagcagctcgatcgcaacggactgcaaggcaacagggagtttcttgttgaagttcttatgctcagcatgctgcaccacccaaatcttgttaaccttattggatattgtgccgatggtgatcagaggcttttagtttatgagtatatgccattaggttctttggaagaccatcttcacgatcctccaccaggcaagtcacggcttgattggaatacaaggatgaagatagctgctggtgcagcgaagggtttggaatatttgcatgacaaagccaatcctccagtcatataccgagatttgaagtgttcaaatatcttgcttggggagggatatcacccaaaattgtctgactttggattggcaaagctcggcccaattggcgataaatcccatgtttccactagagtgatgggtacatatggatactgtgctcctgagtatgctatgactggccagctgactctcaagtcagatgtttatagttttggtgttgttctgttggagatcattacaggacgaagagctatcgacaacacccgagcagcaggggagcaaaatcttgttgcatgggcccggcccttgttcaaggacaggaggaagttcccccagatggcagatccagcgcttcatggtcagtatccatcgagaggattgtaccaggccttggctgttgctgcgatgtgtgtccaagagcaaccgaccatgagacccctgatcggggatgttgttacagctctcgcttaccttgcctcccagacttatgatccagaggcacatggcgtccatcacacgtcacgtttgatgtctcccggcacacaaggtgtatga
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| Protein seq | MKKKKKKSPPQIPPASERDNPPNLASSTVMKQDQDSFQLAANEDILVSNGSSENRRIAARTFTFRELAAATSNFRVDCLLGEGGFGRVYKGYLETVDQVVAIKQLDRNGLQGNREFLVEVLMLSMLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDPPPGKSRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPIGDKSHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRRAIDNTRAAGEQNLVAWARPLFKDRRKFPQMADPALHGQYPSRGLYQALAVAAMCVQEQPTMRPLIGDVVTALAYLASQTYDPEAHGVHHTSRLMSPGTQGV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0695300 | RBH | 0.137624 | 0.0 | 0.973379 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g49470 | RBH | 0.075562 | 0.0 | 0.245120 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0695300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0028890 | RBH | 0.196379 | 0.0 | 1.128711 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0028980 | RBH | 0.257843 | 0.0 | 0.249056 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0028770 | RBH | 0.216342 | 0.000000 | 1.407221 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013320 | SBH | 0.019342 | 0.033247 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0028840 | RBH | 0.589767 | 0.0 | 7.900608 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0482300 | RBH | 1.2812125 | 3.768002 | 9.142919 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0029330 | RBH | 0.054510 | 0.0 | 0.410418 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0496100 | RBH | 2.1800855 | 2.9677685 | 3.230515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0028550 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0029060 | RBH | 0.142389 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0028730 | RBH | 5.510843 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0029090 | RBH | 0.099260 | 0.256685 | 0.247937 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0028640 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G028700 | RBH | 0.000000 | 0.438388 | 0.401179 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0028440 | RBH | 0.331882 | 0.0 | 0.000000 |
