Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsARC_06g0025340 OGI:06077730 | 16/16 ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) Chr06:28538008-28541696
Gene Symbol -
DNA seq

ATGGATGTTGCGGCCGCCGCGGGCGTCGTTGGTGGGTTCTTGCAGGTCGTCTTCGACAAGTACTACGGCTCCAAGCTCGAGCAGTGGGCTGCTCGCTCGGGCCTGCACGGCGACTTCCTCAGCCTCAAGAACCAGCTCCACATGGTCCGTGCCATGCTCGAGGCAGGCGGCGGCGGCAACGCCCCCCACAACGACTCCCTGCGCAGCCTCATCGTGGAGCTCAAATCCGCTGCCTACGCCGCCGACAACGTGCTCGACGAGATGGAGTACTACCGCCTCAAGGAGCTCGTCGAGGACACCAGTGGCCGCGACGGCGGCGCACCGTCGTCGTCGGCTCGCCAGGTGGTCGGCCGCATACTGGTGCCTGCGCCTCTCCTGTCCAATCCATTCAAGCGAGCCAGGACGGGCGCCGACGAAGCCTTGCAAGGGCAGGGCGCTGACACGGACACCCCCAACTTCGATCAGGATGCAATGTCCTCCAAGATCAAATCGATATCCTGCTGCCTCGAGCAGATTGCTGGCATGGTGCGGAGGATCATCGAGCTCGACAAGTTGGTGTCGATGGCGAGCTTAGGGCATGTACAACCAGAGGTGGTGGTAAGTCTGCGGCAGACAAGCTCCTTTCCCACTGAAACTAAGTTGTTTGGGAGAGATGAGTCTACCAACAACATCATAAACCTTATGCTTAGAACAGATATGGAGTCTAGGTACAATAACTTCAATGTTCTTCCCATTGTTGGCATTGGTGGAGTTGGTAAGACTGCTCTTGCCCAGTCTGTCTACAATCATCAAAGAGTAGTTGATTCATTTCAAGTGAGAGCCTGGGCATGCGTTTCTGATACTCTTGATGTGCGCAGAGTTATAGCAGATTTGATAGATTCGATCGATGGTGGCCAAGAAACTCCCAAGTTTCATAGAGTGCCTAGTCTTGATGCAACTCAGAGAACTCTACTGAGGAAAATTGAAGGGAAGAGGTTCTTGATTGTCCTTGATGATGTGTGGGTCAGCAGCCACTGGGAGAAGCTTTGTGGTCCCTTCTCCGCGGGGATGTCTGGAAGCATGGTTTTAGTTACAACGCGACAGAGAAAAATCGCCAAGGCCATGGGCACATTTGACAGTTTGACACTGCACGGTTTACATGATAATGAATTTTGGGCTTTCTTCCTACAGTGCACAAACATCACAGAGGACCACAGCTTGGCTCGAATAGGCAGGAAAATAGCTCTCAAGTTGTATGGCAACCCCTTGGCTGCCAAGACCATGGGGAGATTCCTTTCGGAAAACCACGAGGAGGAGCATTGGTGCAAGTTTCTGAATAGAAACATATGGGAACTAAAACAAGAGCCTGACGACGTTATGCCGGTTTTGTTGTTGAGTTATCAGCATCTCCCTCTAAGCTTGCAGCGATGTTTCACCTATTGTGCCATATTTCCAAGAGGCTATAAGTTCACTGAGCAAGAGCTTATATTTGCTTGGATGGCACAAGGCCTTGTTCCAACACCTGGAGAGGATCAGACATTGGAAGATGTAGGAAAGGAGTACCTTAACGAGTTACTCAGTTGCTCATTCTTCCATATAATCGAGAGTGGCCACTACATGATACCTGGGTTGTTACATGATCTTGCTCAACTTGTTGCAGAAGGGGAATTCCAGGCAACTAATGGTAAATTCCCTATCTCAGTTGAGGCTTGTCACTTGTATATCTCTCATTCTGATCATGCTCGTGATATGGGCTTATGTCATCCACTCGATTGTTCTGGTATTCAGATGAAACGCCGCATCCAAAAGAACTCATGGGCTGGCTTGCTGCATCTAAAAAATTTGCGGACTATAATGTTCTCTGCCTCTTCATCAATTTGGTCTCCAGGTTCTGAGGTAGTCTTTGTCCAGAGCAATTGGCCTAGTACTATCAGACTGTTGTCTCTGCCCTGCACTTTCCGAAAAGAGCAACTTGCAGCAGTTAGTAACTTCATACATTTGCGTTACCTAGACCTCAGATGGTCACGCCTTGAAGAATTACCTGAAGCCGTATGCAAGCTTTACCTACTACAAGTTTTGAACATAAAGCACTGTCCGTGCCTTCTTCATTTACCTCCAAGGATAGCCAACTTATTAAACTTTGAGCATCTGATTGCTGATGAAGGAAAACATTTACTCACAGGAGTTCCATGTGTTGGCAATATGACTTCCTTGCTTCTGTTGGATAAGTTCTGTGTTAGGAAAACCAGGGGCTTTGACATTGGACAACTGAAAAGGTTGAGGAACCTAAGAGGTTTGTTGAAAGTTCAGAATCTCGAGAATGTTGATGGCAATGAAGAAGCAGCAAAGGCTAGATTGAGTGACAAAAGGCACCTAACTGAGCTGTGGCTGTCATGGAGTGCCGGTTCTTGTGTACAAGAGCCTTCAGAACAATACCACGTCCTGGAAGGTCTTGCACCACATTCAAATGTAAGTTGTCTCCATATTACAGGCTATAGGGGCAGTACTACCCCATCATGGCTTGCTAGTAATCTCAGCCTTAGCTCACTAGAATATCTTTATCTAGATTATTGTTCTGAATTGGAAATTCTTCCTCCACTGGGACTCCTCCCTCACCTTAGGAAGCTGCATATAGTCAATATGCACGCGCTAAGAAGAATTGGCTCTGAGTTCTATAGCAGTGGTCAGGTGGTGGGGTTTCCATGTTTGGAAGGGCTATTTATCAAAACAATGCCAGAATTGGAAGACTGGAATGTAGATGACTCCAATGTTTTCCCTAGCCTGACCAGTTTGACTGTAGAAGATTGTCCCAAGCTGAGTAGAATTCCTAGTTTTCTATGGAGTAGAGAAAACAAGTGTTGGTTCCCAAAGCTTGGTAAAATCAACATCAAATACTGTCCTGAATTGGTGCTGTCAGAAGCCCTCCTTATTCCACGCTTGCCTTGGCTCCTTGATATAGACATTCAAATTTGGGGACAAACAGTGATAAATTTGCGTGGTGGCTGTCTTGAGGTTTCTGAAATCAATGCTAATACTAGCTCAGGCCCAATAAATGCTGTTCTACAATTGCATTGGCTAAAACATGTGTCTAGTTTTCATATTTGGGCACAGGACAGTCTTTCTGTACACCCCTGCAAGCAAAAGACAGAACCATCAGCATGTAATTCTGAACACATGGTAAATTCTCTACAAACATCAGCAGAGAAAGTTGAAGTCACAGGGTATGGTATTACTGATGAATTATTGTCAGCAATTTTGGAGAATGAAATCTGTCCTTCAAGTTTATCTATATCAGATTGTCCACAAATAACATCTCTTGATCTTAGTCCCCTAAGATCATTAAAATCTCTGGTAATACACAATTGTGTATCACTAAGAAAACTCTTTGACCGACAATATTTCACTGCTCTTAGGGATTTGGAAGTGACCAATGCATCAAGTTTTGCTGAAGCATGGAGTGAACTGTTAGGATCCAGATATGCAGAGTGGGGTCAAGTTACTACCTCACTGGAATCTCTTACAGTTGACAGCACCTTATTCCTCAACTCCCCTTTGTGTGCAGTGCTCACTTCTCTGAAGAAGCTAACAATTCATTCGGATTTCAGGGTCACTTCCCTCTCAAGACAACAGGTGCAGGCACTTCTACTCTTAACCTCTCTGCAAGATCTTGGGTTTATACAATGCTGCAATCTACATTCTCTTCCCAGTGA

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CDS seq

ATGGATGTTGCGGCCGCCGCGGGCGTCGTTGGTGGGTTCTTGCAGGTCGTCTTCGACAAGTACTACGGCTCCAAGCTCGAGCAGTGGGCTGCTCGCTCGGGCCTGCACGGCGACTTCCTCAGCCTCAAGAACCAGCTCCACATGGTCCGTGCCATGCTCGAGGCAGGCGGCGGCGGCAACGCCCCCCACAACGACTCCCTGCGCAGCCTCATCGTGGAGCTCAAATCCGCTGCCTACGCCGCCGACAACGTGCTCGACGAGATGGAGTACTACCGCCTCAAGGAGCTCGTCGAGGACACCAGTGGCCGCGACGGCGGCGCACCGTCGTCGTCGGCTCGCCAGGTGGTCGGCCGCATACTGGTGCCTGCGCCTCTCCTGTCCAATCCATTCAAGCGAGCCAGGACGGGCGCCGACGAAGCCTTGCAAGGGCAGGGCGCTGACACGGACACCCCCAACTTCGATCAGGATGCAATGTCCTCCAAGATCAAATCGATATCCTGCTGCCTCGAGCAGATTGCTGGCATGGTGCGGAGGATCATCGAGCTCGACAAGTTGGTGTCGATGGCGAGCTTAGGGCATGTACAACCAGAGGTGGTGGTAAGTCTGCGGCAGACAAGCTCCTTTCCCACTGAAACTAAGTTGTTTGGGAGAGATGAGTCTACCAACAACATCATAAACCTTATGCTTAGAACAGATATGGAGTCTAGGTACAATAACTTCAATGTTCTTCCCATTGTTGGCATTGGTGGAGTTGGTAAGACTGCTCTTGCCCAGTCTGTCTACAATCATCAAAGAGTAGTTGATTCATTTCAAGTGAGAGCCTGGGCATGCGTTTCTGATACTCTTGATGTGCGCAGAGTTATAGCAGATTTGATAGATTCGATCGATGGTGGCCAAGAAACTCCCAAGTTTCATAGAGTGCCTAGTCTTGATGCAACTCAGAGAACTCTACTGAGGAAAATTGAAGGGAAGAGGTTCTTGATTGTCCTTGATGATGTGTGGGTCAGCAGCCACTGGGAGAAGCTTTGTGGTCCCTTCTCCGCGGGGATGTCTGGAAGCATGGTTTTAGTTACAACGCGACAGAGAAAAATCGCCAAGGCCATGGGCACATTTGACAGTTTGACACTGCACGGTTTACATGATAATGAATTTTGGGCTTTCTTCCTACAGTGCACAAACATCACAGAGGACCACAGCTTGGCTCGAATAGGCAGGAAAATAGCTCTCAAGTTGTATGGCAACCCCTTGGCTGCCAAGACCATGGGGAGATTCCTTTCGGAAAACCACGAGGAGGAGCATTGGTGCAAGTTTCTGAATAGAAACATATGGGAACTAAAACAAGAGCCTGACGACGTTATGCCGGTTTTGTTGTTGAGTTATCAGCATCTCCCTCTAAGCTTGCAGCGATGTTTCACCTATTGTGCCATATTTCCAAGAGGCTATAAGTTCACTGAGCAAGAGCTTATATTTGCTTGGATGGCACAAGGCCTTGTTCCAACACCTGGAGAGGATCAGACATTGGAAGATGTAGGAAAGGAGTACCTTAACGAGTTACTCAGTTGCTCATTCTTCCATATAATCGAGAGTGGCCACTACATGATACCTGGGTTGTTACATGATCTTGCTCAACTTGTTGCAGAAGGGGAATTCCAGGCAACTAATGGAGTTCCATGTGTTGGCAATATGACTTCCTTGCTTCTGTTGGATAAGTTCTGTGTTAGGAAAACCAGGGGCTTTGACATTGGACAACTGAAAAGGTTGAGGAACCTAAGAGGTTTGTTGAAAGTTCAGAATCTCGAGAATGTTGATGGCAATGAAGAAGCAGCAAAGGCTAGATTGAGTGACAAAAGGCACCTAACTGAGCTGTGGCTGTCATGGAGTGCCGGTTCTTGTGTACAAGAGCCTTCAGAACAATACCACGTCCTGGAAGGTCTTGCACCACATTCAAATGACAGTCTTTCTGTACACCCCTGCAAGCAAAAGACAGAACCATCAGCATGTAATTCTGAACACATGGTAAATTCTCTACAAACATCAGCAGAGAAAGTTGAAGTCACAGGTGCTCACTTCTCTGAAGAAGCTAACAATTCATTCGGATTTCAGGGTCACTTCCCTCTCAAGACAACAGGTGCAGGCACTTCTACTCTTAACCTCTCTGCAAGATCTTGGGTTTATACAATGCTGCAATCTACATTCTCTTCCCAGTGA

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Protein seq

MDVAAAAGVVGGFLQVVFDKYYGSKLEQWAARSGLHGDFLSLKNQLHMVRAMLEAGGGGNAPHNDSLRSLIVELKSAAYAADNVLDEMEYYRLKELVEDTSGRDGGAPSSSARQVVGRILVPAPLLSNPFKRARTGADEALQGQGADTDTPNFDQDAMSSKIKSISCCLEQIAGMVRRIIELDKLVSMASLGHVQPEVVVSLRQTSSFPTETKLFGRDESTNNIINLMLRTDMESRYNNFNVLPIVGIGGVGKTALAQSVYNHQRVVDSFQVRAWACVSDTLDVRRVIADLIDSIDGGQETPKFHRVPSLDATQRTLLRKIEGKRFLIVLDDVWVSSHWEKLCGPFSAGMSGSMVLVTTRQRKIAKAMGTFDSLTLHGLHDNEFWAFFLQCTNITEDHSLARIGRKIALKLYGNPLAAKTMGRFLSENHEEEHWCKFLNRNIWELKQEPDDVMPVLLLSYQHLPLSLQRCFTYCAIFPRGYKFTEQELIFAWMAQGLVPTPGEDQTLEDVGKEYLNELLSCSFFHIIESGHYMIPGLLHDLAQLVAEGEFQATNGVPCVGNMTSLLLLDKFCVRKTRGFDIGQLKRLRNLRGLLKVQNLENVDGNEEAAKARLSDKRHLTELWLSWSAGSCVQEPSEQYHVLEGLAPHSNDSLSVHPCKQKTEPSACNSEHMVNSLQTSAEKVEVTGAHFSEEANNSFGFQGHFPLKTTGAGTSTLNLSARSWVYTMLQSTFSSQ

Function Putative disease resistance protein RGA1 [UniProtKB/Swiss-Prot:Q7XA42]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsARC_06g0025340 OsARC_06g0025340.01 Chr06 28538008 28541696 + NAM
CDS seq

ATGGATGTTGCGGCCGCCGCGGGCGTCGTTGGTGGGTTCTTGCAGGTCGTCTTCGACAAGTACTACGGCTCCAAGCTCGAGCAGTGGGCTGCTCGCTCGGGCCTGCACGGCGACTTCCTCAGCCTCAAGAACCAGCTCCACATGGTCCGTGCCATGCTCGAGGCAGGCGGCGGCGGCAACGCCCCCCACAACGACTCCCTGCGCAGCCTCATCGTGGAGCTCAAATCCGCTGCCTACGCCGCCGACAACGTGCTCGACGAGATGGAGTACTACCGCCTCAAGGAGCTCGTCGAGGACACCAGTGGCCGCGACGGCGGCGCACCGTCGTCGTCGGCTCGCCAGGTGGTCGGCCGCATACTGGTGCCTGCGCCTCTCCTGTCCAATCCATTCAAGCGAGCCAGGACGGGCGCCGACGAAGCCTTGCAAGGGCAGGGCGCTGACACGGACACCCCCAACTTCGATCAGGATGCAATGTCCTCCAAGATCAAATCGATATCCTGCTGCCTCGAGCAGATTGCTGGCATGGTGCGGAGGATCATCGAGCTCGACAAGTTGGTGTCGATGGCGAGCTTAGGGCATGTACAACCAGAGGTGGTGGTAAGTCTGCGGCAGACAAGCTCCTTTCCCACTGAAACTAAGTTGTTTGGGAGAGATGAGTCTACCAACAACATCATAAACCTTATGCTTAGAACAGATATGGAGTCTAGGTACAATAACTTCAATGTTCTTCCCATTGTTGGCATTGGTGGAGTTGGTAAGACTGCTCTTGCCCAGTCTGTCTACAATCATCAAAGAGTAGTTGATTCATTTCAAGTGAGAGCCTGGGCATGCGTTTCTGATACTCTTGATGTGCGCAGAGTTATAGCAGATTTGATAGATTCGATCGATGGTGGCCAAGAAACTCCCAAGTTTCATAGAGTGCCTAGTCTTGATGCAACTCAGAGAACTCTACTGAGGAAAATTGAAGGGAAGAGGTTCTTGATTGTCCTTGATGATGTGTGGGTCAGCAGCCACTGGGAGAAGCTTTGTGGTCCCTTCTCCGCGGGGATGTCTGGAAGCATGGTTTTAGTTACAACGCGACAGAGAAAAATCGCCAAGGCCATGGGCACATTTGACAGTTTGACACTGCACGGTTTACATGATAATGAATTTTGGGCTTTCTTCCTACAGTGCACAAACATCACAGAGGACCACAGCTTGGCTCGAATAGGCAGGAAAATAGCTCTCAAGTTGTATGGCAACCCCTTGGCTGCCAAGACCATGGGGAGATTCCTTTCGGAAAACCACGAGGAGGAGCATTGGTGCAAGTTTCTGAATAGAAACATATGGGAACTAAAACAAGAGCCTGACGACGTTATGCCGGTTTTGTTGTTGAGTTATCAGCATCTCCCTCTAAGCTTGCAGCGATGTTTCACCTATTGTGCCATATTTCCAAGAGGCTATAAGTTCACTGAGCAAGAGCTTATATTTGCTTGGATGGCACAAGGCCTTGTTCCAACACCTGGAGAGGATCAGACATTGGAAGATGTAGGAAAGGAGTACCTTAACGAGTTACTCAGTTGCTCATTCTTCCATATAATCGAGAGTGGCCACTACATGATACCTGGGTTGTTACATGATCTTGCTCAACTTGTTGCAGAAGGGGAATTCCAGGCAACTAATGGAGTTCCATGTGTTGGCAATATGACTTCCTTGCTTCTGTTGGATAAGTTCTGTGTTAGGAAAACCAGGGGCTTTGACATTGGACAACTGAAAAGGTTGAGGAACCTAAGAGGTTTGTTGAAAGTTCAGAATCTCGAGAATGTTGATGGCAATGAAGAAGCAGCAAAGGCTAGATTGAGTGACAAAAGGCACCTAACTGAGCTGTGGCTGTCATGGAGTGCCGGTTCTTGTGTACAAGAGCCTTCAGAACAATACCACGTCCTGGAAGGTCTTGCACCACATTCAAATGACAGTCTTTCTGTACACCCCTGCAAGCAAAAGACAGAACCATCAGCATGTAATTCTGAACACATGGTAAATTCTCTACAAACATCAGCAGAGAAAGTTGAAGTCACAGGTGCTCACTTCTCTGAAGAAGCTAACAATTCATTCGGATTTCAGGGTCACTTCCCTCTCAAGACAACAGGTGCAGGCACTTCTACTCTTAACCTCTCTGCAAGATCTTGGGTTTATACAATGCTGCAATCTACATTCTCTTCCCAGTGA

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Protein seq

MDVAAAAGVVGGFLQVVFDKYYGSKLEQWAARSGLHGDFLSLKNQLHMVRAMLEAGGGGNAPHNDSLRSLIVELKSAAYAADNVLDEMEYYRLKELVEDTSGRDGGAPSSSARQVVGRILVPAPLLSNPFKRARTGADEALQGQGADTDTPNFDQDAMSSKIKSISCCLEQIAGMVRRIIELDKLVSMASLGHVQPEVVVSLRQTSSFPTETKLFGRDESTNNIINLMLRTDMESRYNNFNVLPIVGIGGVGKTALAQSVYNHQRVVDSFQVRAWACVSDTLDVRRVIADLIDSIDGGQETPKFHRVPSLDATQRTLLRKIEGKRFLIVLDDVWVSSHWEKLCGPFSAGMSGSMVLVTTRQRKIAKAMGTFDSLTLHGLHDNEFWAFFLQCTNITEDHSLARIGRKIALKLYGNPLAAKTMGRFLSENHEEEHWCKFLNRNIWELKQEPDDVMPVLLLSYQHLPLSLQRCFTYCAIFPRGYKFTEQELIFAWMAQGLVPTPGEDQTLEDVGKEYLNELLSCSFFHIIESGHYMIPGLLHDLAQLVAEGEFQATNGVPCVGNMTSLLLLDKFCVRKTRGFDIGQLKRLRNLRGLLKVQNLENVDGNEEAAKARLSDKRHLTELWLSWSAGSCVQEPSEQYHVLEGLAPHSNDSLSVHPCKQKTEPSACNSEHMVNSLQTSAEKVEVTGAHFSEEANNSFGFQGHFPLKTTGAGTSTLNLSARSWVYTMLQSTFSSQ

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.000000 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_06g0667900 RBH 0.0 0.141815 0.000000
Nipponbare | IRGSP 1.0 | MSU LOC_Os06g45690 RBH 0.0 0.078270 0.071395
Nipponbare | IRGSP 1.0 | RAP-db Os06g0667900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_06g0025750 RBH 0.000000 2.376935 0.638857
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_06g0025560 RBH 0.000000 1.141305 0.203667
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_06g0025740 RBH 0.0 2.019442 1.347823
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0006760 RBH 0.194542 0.015325 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_06g0025820 RBH 0.472539 0.797780 2.177094
Minghui 63 | MH63RS3 | HZAU OsMH63_06G0433800 RBH 0.5650425 1.825241 1.362653
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_06g0025290 RBH 0.047049 0.130327 0.089696
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_06G0416500 RBH 0.6242935 0.933284 4.3692095
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_06g0025690 RBH 0.0 0.110063 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_06g0025700 RBH 0.0 2.046933 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_06g0025360 RBH 0.0 2.859706 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_06g0025960 RBH 0.0 0.249250 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_06g0025610 RBH 0.0 0.410390 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_06G025450 RBH 0.0 0.705228 0.642107
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_06g0025520 RBH 0.0 1.919036 0.666668
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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