Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_06g0020490 | OGI:06063770 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr06:23918474-23922262 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaccaaatgaactgtggtgttgctgtccgaaatataaagccgtgtgctcatggatcattagagcttccatcttgtcctgaattacacagctttgaattgcagctcgcagcaatggcttcctcccaaattgtcttgtccccaggccatggcctgcttctttttcccctcaaattcctcttcttccttccactggtcctcaccggtggaaccgaagatgatcgacaagctctcctttgctttatgtcccaactctcagctccatccagagctttggcctcatggagcaacacatccatggagttctgcagttggcagggcatcacctgcagctcccaatctcctcgccgtgcgatcgccctggacctctcatcgcaaggcatcacaggctccataccaccttgcattgccaacctcacctttctcacagtgttgcaactgtcaaacaatagcttccatggaagcataccatctgagcttggcctcctaaaccaactgagctacctcaacctcagcacgaactctttggaaggtaacatcccatctgagctctcttcatgttcccagcttaaaattcttgaccttagcaacaacaatctccaagggagcatcccttctgcttttggggatttacctttgctacaaaaactagtccttgccaacagcaggcttgcaggtgaaataccagagtctttaggaagcagcatatcactcacatatgttgaccttggaaacaatgctctcacagggagaatcccagagtccttggtaaatagttcatctctacaagtgcttaggctcatgagaaatgcccttagcggacaactcccaactaatctgttcaactcgtcgtctcttactgacatttgcctccaacagaacagctttgttggtactataccacctgttactgccatgtcttcgcaagtcaagtatcttgatttatctgacaacaatctcattggaacaatgccttcctcactaggaaacctttcttcgctaatctatcttcgtctttcacgaaacattttactcgggagcattccagagagcttaggacatgtcgcaacacttgaggtgatatccttgaatagcaacaatttgtcagggtcaatacctccatctctcttcaacatgtcctctctgacattccttgccatgacaaataactcactcattggaaaaattccttccaacatcggctacactctcccaaatattcaggaattgtacttgtcagatgtcaagtttgatggttcaatcccagcttcacttctcaatgcatcaaatctacagactttttacctggcaaactgtggcctaactgggtccattccaccgttagggtcattgccaaatttgcagaaacttgatttaggattcaacatgtttgaggcagatggatggagctttgtctcttcactcactaattgctctaggttgactagactgatgctggatgggaacaatatccaagggaacctgccaaatactattggaaatctttctagtgatctacagtggttgtggctaggcggcaacaacatttctgggtctataccaccagagattggtaatctcaagggcctcactaagttgtacatggattgcaatcttttgactggaaatataccaccaacaattggaaatttacacaacttggtcgatctaaatttcacacaaaattatctctcaggagtgatcccagatgctattggaaatcttttgcaactgactaacctgagactagataggaacaactttagtggaagtatacctgcaagcataggccagtgcactcaacttacaacactcaaccttgcttacaactcattaaatgggagcataccgagtaatatctttcaaatttattctctttctgttgttttggatttgtcacacaattacttgtctggaggtatgccagaggaagttggcaacctcgttaatttgaataaactcagcatctcaaacaataggttgtcaggtgaagttccatccactctaggcgaatgcgtgcttctagaatctgttgagatgcaaagtaacttccttgtaggaagcattccacaatcttttgcaaagttggtgggcatcaagataatggatatttctcagaacaagttgtcaggaaaaatccctgagttcctcacatcctttagctctgtatactatctcaatttatccttcaacaacttctatggagaaattccaatagggggtgtgttcagcaatgctagtgtggtatccgtcgaaggaaatgatggtttgtgtgcatgggctccaacaaaaggtatacgtttttgttcatctttggctgacagggaaagcatgcacaagaagttggttctaacactaaagataattatatcgtttgttattgttactatcacactatgctgtgttctagtggcacgttcgagaaaggggatgaaactaaagccacaattgctaccattcaatcaacatctggagcagattacatatgaagacattgtgaaggctacaaaaagtttttcttctgacaacttgattggatcaggatcatttggcatggtttacaagggcaatctcgaattccgacaagatcaagttgccatcaagatatttaaccttaacatatatggagcaaataggagctttgttgcagagtgtgaagccctacgaaatgttcgccatcgaaatatcataaaaatcatcacttcatgctcttcagtggattctgaaggggcagactttaaggccttagtatttgaatacatgaagaatgggaacctagagatgtggttacatccaaagaaacatgagcatagtcaaaggaatgccctaacttttagccaaagagtcaatatagtcttggaggtagcatttgctctggattatcttcacaaccattgtgtacctccactaatacattgtgacttgaagccaagcaatattcttttggatcttgacatggttgcatatgtcagtgacttcggttcagcaagatttctatgtccaaaatcaaacttggatcaagagagtgtaacaagtttgggttgccttaaaggaacagttggatacatcccaccaggtgagataccttctttttgtaaatttttttttcccaaagacttctttctctaagtctttttcccccacagacatgtgcatatgcacatattgtgcctattctgatctaattttatttatctcttaatctaaatgcagaatatggcatgagcaaagaaatatcaacaaaggccgatgtttatagttttggagtgattctattagaaatgataacaggtattagcccaacggatgaaatttttagtgatggcacaagcctgcatgaacttgttgctggagaattcgccaaaaattcctacaatttaattgatcccaccatgctacaagatgaaatagatgcaactgaaataatgatgaattgcgttattccattggtgagaacaggactctcttgctcagttacttctcccaaagaccgatgtgaaattggccatgtttgtagtgaaatccttagaatcaggcatgagttatcaaagatagatggtgaatgaaaaaaacattgaagtactggcatgatatccagtaccctgctgttgagttccaacatggtctacagatcaattaaactttgatttcattgttttttttttcatatatatgtaactggatgagttgcttctaggtctttcacgaaaaacaatttaaacttgtagcacttaggtacaagagtttattcccacaactccaaaaagtaataacaagatttctttgtgc
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| CDS seq | atggcttcctcccaaattgtcttgtccccaggccatggcctgcttctttttcccctcaaattcctcttcttccttccactggtcctcaccggtggaaccgaagatgatcgacaagctctcctttgctttatgtcccaactctcagctccatccagagctttggcctcatggagcaacacatccatggagttctgcagttggcagggcatcacctgcagctcccaatctcctcgccgtgcgatcgccctggacctctcatcgcaaggcatcacaggctccataccaccttgcattgccaacctcacctttctcacagtgttgcaactgtcaaacaatagcttccatggaagcataccatctgagcttggcctcctaaaccaactgagctacctcaacctcagcacgaactctttggaaggtaacatcccatctgagctctcttcatgttcccagcttaaaattcttgaccttagcaacaacaatctccaagggagcatcccttctgcttttggggatttacctttgctacaaaaactagtccttgccaacagcaggcttgcaggtgaaataccagagtctttaggaagcagcatatcactcacatatgttgaccttggaaacaatgctctcacagggagaatcccagagtccttggtaaatagttcatctctacaagtgcttaggctcatgagaaatgcccttagcggacaactcccaactaatctgttcaactcgtcgtctcttactgacatttgcctccaacagaacagctttgttggtactataccacctgttactgccatgtcttcgcaagtcaagtatcttgatttatctgacaacaatctcattggaacaatgccttcctcactaggaaacctttcttcgctaatctatcttcgtctttcacgaaacattttactcgggagcattccagagagcttaggacatgtcgcaacacttgaggtgatatccttgaatagcaacaatttgtcagggtcaatacctccatctctcttcaacatgtcctctctgacattccttgccatgacaaataactcactcattggaaaaattccttccaacatcggctacactctcccaaatattcaggaattgtacttgtcagatgtcaagtttgatggttcaatcccagcttcacttctcaatgcatcaaatctacagactttttacctggcaaactgtggcctaactgggtccattccaccgttagggtcattgccaaatttgcagaaacttgatttaggattcaacatgtttgaggcagatggatggagctttgtctcttcactcactaattgctctaggttgactagactgatgctggatgggaacaatatccaagggaacctgccaaatactattggaaatctttctagtgatctacagtggttgtggctaggcggcaacaacatttctgggtctataccaccagagattggtaatctcaagggcctcactaagttgtacatggattgcaatcttttgactggaaatataccaccaacaattggaaatttacacaacttggtcgatctaaatttcacacaaaattatctctcaggagtgatcccagatgctattggaaatcttttgcaactgactaacctgagactagataggaacaactttagtggaagtatacctgcaagcataggccagtgcactcaacttacaacactcaaccttgcttacaactcattaaatgggagcataccgagtaatatctttcaaatttattctctttctgttgttttggatttgtcacacaattacttgtctggaggtatgccagaggaagttggcaacctcgttaatttgaataaactcagcatctcaaacaataggttgtcaggtgaagttccatccactctaggcgaatgcgtgcttctagaatctgttgagatgcaaagtaacttccttgtaggaagcattccacaatcttttgcaaagttggtgggcatcaagataatggatatttctcagaacaagttgtcaggaaaaatccctgagttcctcacatcctttagctctgtatactatctcaatttatccttcaacaacttctatggagaaattccaatagggggtgtgttcagcaatgctagtgtggtatccgtcgaaggaaatgatggtttgtgtgcatgggctccaacaaaaggtatacgtttttgttcatctttggctgacagggaaagcatgcacaagaagttggttctaacactaaagataattatatcgtttgttattgttactatcacactatgctgtgttctagtggcacgttcgagaaaggggatgaaactaaagccacaattgctaccattcaatcaacatctggagcagattacatatgaagacattgtgaaggctacaaaaagtttttcttctgacaacttgattggatcaggatcatttggcatggtttacaagggcaatctcgaattccgacaagatcaagttgccatcaagatatttaaccttaacatatatggagcaaataggagctttgttgcagagtgtgaagccctacgaaatgttcgccatcgaaatatcataaaaatcatcacttcatgctcttcagtggattctgaaggggcagactttaaggccttagtatttgaatacatgaagaatgggaacctagagatgtggttacatccaaagaaacatgagcatagtcaaaggaatgccctaacttttagccaaagagtcaatatagtcttggaggtagcatttgctctggattatcttcacaaccattgtgtacctccactaatacattgtgacttgaagccaagcaatattcttttggatcttgacatggttgcatatgtcagtgacttcggttcagcaagatttctatgtccaaaatcaaacttggatcaagagagtgtaacaagtttgggttgccttaaaggaacagttggatacatcccaccagaatatggcatgagcaaagaaatatcaacaaaggccgatgtttatagttttggagtgattctattagaaatgataacaggtattagcccaacggatgaaatttttagtgatggcacaagcctgcatgaacttgttgctggagaattcgccaaaaattcctacaatttaattgatcccaccatgctacaagatgaaatagatgcaactgaaataatgatgaattgcgttattccattggtgagaacaggactctcttgctcagttacttctcccaaagaccgatgtgaaattggccatgtttgtagtgaaatccttagaatcaggcatgagttatcaaagatagatggtgaatga
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| Protein seq | MASSQIVLSPGHGLLLFPLKFLFFLPLVLTGGTEDDRQALLCFMSQLSAPSRALASWSNTSMEFCSWQGITCSSQSPRRAIALDLSSQGITGSIPPCIANLTFLTVLQLSNNSFHGSIPSELGLLNQLSYLNLSTNSLEGNIPSELSSCSQLKILDLSNNNLQGSIPSAFGDLPLLQKLVLANSRLAGEIPESLGSSISLTYVDLGNNALTGRIPESLVNSSSLQVLRLMRNALSGQLPTNLFNSSSLTDICLQQNSFVGTIPPVTAMSSQVKYLDLSDNNLIGTMPSSLGNLSSLIYLRLSRNILLGSIPESLGHVATLEVISLNSNNLSGSIPPSLFNMSSLTFLAMTNNSLIGKIPSNIGYTLPNIQELYLSDVKFDGSIPASLLNASNLQTFYLANCGLTGSIPPLGSLPNLQKLDLGFNMFEADGWSFVSSLTNCSRLTRLMLDGNNIQGNLPNTIGNLSSDLQWLWLGGNNISGSIPPEIGNLKGLTKLYMDCNLLTGNIPPTIGNLHNLVDLNFTQNYLSGVIPDAIGNLLQLTNLRLDRNNFSGSIPASIGQCTQLTTLNLAYNSLNGSIPSNIFQIYSLSVVLDLSHNYLSGGMPEEVGNLVNLNKLSISNNRLSGEVPSTLGECVLLESVEMQSNFLVGSIPQSFAKLVGIKIMDISQNKLSGKIPEFLTSFSSVYYLNLSFNNFYGEIPIGGVFSNASVVSVEGNDGLCAWAPTKGIRFCSSLADRESMHKKLVLTLKIIISFVIVTITLCCVLVARSRKGMKLKPQLLPFNQHLEQITYEDIVKATKSFSSDNLIGSGSFGMVYKGNLEFRQDQVAIKIFNLNIYGANRSFVAECEALRNVRHRNIIKIITSCSSVDSEGADFKALVFEYMKNGNLEMWLHPKKHEHSQRNALTFSQRVNIVLEVAFALDYLHNHCVPPLIHCDLKPSNILLDLDMVAYVSDFGSARFLCPKSNLDQESVTSLGCLKGTVGYIPPEYGMSKEISTKADVYSFGVILLEMITGISPTDEIFSDGTSLHELVAGEFAKNSYNLIDPTMLQDEIDATEIMMNCVIPLVRTGLSCSVTSPKDRCEIGHVCSEILRIRHELSKIDGE |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_06g0020490 | OsARC_06g0020490.01 | Chr06 | 23918474 | 23922262 | + | NAM | ||
| CDS seq | atggcttcctcccaaattgtcttgtccccaggccatggcctgcttctttttcccctcaaattcctcttcttccttccactggtcctcaccggtggaaccgaagatgatcgacaagctctcctttgctttatgtcccaactctcagctccatccagagctttggcctcatggagcaacacatccatggagttctgcagttggcagggcatcacctgcagctcccaatctcctcgccgtgcgatcgccctggacctctcatcgcaaggcatcacaggctccataccaccttgcattgccaacctcacctttctcacagtgttgcaactgtcaaacaatagcttccatggaagcataccatctgagcttggcctcctaaaccaactgagctacctcaacctcagcacgaactctttggaaggtaacatcccatctgagctctcttcatgttcccagcttaaaattcttgaccttagcaacaacaatctccaagggagcatcccttctgcttttggggatttacctttgctacaaaaactagtccttgccaacagcaggcttgcaggtgaaataccagagtctttaggaagcagcatatcactcacatatgttgaccttggaaacaatgctctcacagggagaatcccagagtccttggtaaatagttcatctctacaagtgcttaggctcatgagaaatgcccttagcggacaactcccaactaatctgttcaactcgtcgtctcttactgacatttgcctccaacagaacagctttgttggtactataccacctgttactgccatgtcttcgcaagtcaagtatcttgatttatctgacaacaatctcattggaacaatgccttcctcactaggaaacctttcttcgctaatctatcttcgtctttcacgaaacattttactcgggagcattccagagagcttaggacatgtcgcaacacttgaggtgatatccttgaatagcaacaatttgtcagggtcaatacctccatctctcttcaacatgtcctctctgacattccttgccatgacaaataactcactcattggaaaaattccttccaacatcggctacactctcccaaatattcaggaattgtacttgtcagatgtcaagtttgatggttcaatcccagcttcacttctcaatgcatcaaatctacagactttttacctggcaaactgtggcctaactgggtccattccaccgttagggtcattgccaaatttgcagaaacttgatttaggattcaacatgtttgaggcagatggatggagctttgtctcttcactcactaattgctctaggttgactagactgatgctggatgggaacaatatccaagggaacctgccaaatactattggaaatctttctagtgatctacagtggttgtggctaggcggcaacaacatttctgggtctataccaccagagattggtaatctcaagggcctcactaagttgtacatggattgcaatcttttgactggaaatataccaccaacaattggaaatttacacaacttggtcgatctaaatttcacacaaaattatctctcaggagtgatcccagatgctattggaaatcttttgcaactgactaacctgagactagataggaacaactttagtggaagtatacctgcaagcataggccagtgcactcaacttacaacactcaaccttgcttacaactcattaaatgggagcataccgagtaatatctttcaaatttattctctttctgttgttttggatttgtcacacaattacttgtctggaggtatgccagaggaagttggcaacctcgttaatttgaataaactcagcatctcaaacaataggttgtcaggtgaagttccatccactctaggcgaatgcgtgcttctagaatctgttgagatgcaaagtaacttccttgtaggaagcattccacaatcttttgcaaagttggtgggcatcaagataatggatatttctcagaacaagttgtcaggaaaaatccctgagttcctcacatcctttagctctgtatactatctcaatttatccttcaacaacttctatggagaaattccaatagggggtgtgttcagcaatgctagtgtggtatccgtcgaaggaaatgatggtttgtgtgcatgggctccaacaaaaggtatacgtttttgttcatctttggctgacagggaaagcatgcacaagaagttggttctaacactaaagataattatatcgtttgttattgttactatcacactatgctgtgttctagtggcacgttcgagaaaggggatgaaactaaagccacaattgctaccattcaatcaacatctggagcagattacatatgaagacattgtgaaggctacaaaaagtttttcttctgacaacttgattggatcaggatcatttggcatggtttacaagggcaatctcgaattccgacaagatcaagttgccatcaagatatttaaccttaacatatatggagcaaataggagctttgttgcagagtgtgaagccctacgaaatgttcgccatcgaaatatcataaaaatcatcacttcatgctcttcagtggattctgaaggggcagactttaaggccttagtatttgaatacatgaagaatgggaacctagagatgtggttacatccaaagaaacatgagcatagtcaaaggaatgccctaacttttagccaaagagtcaatatagtcttggaggtagcatttgctctggattatcttcacaaccattgtgtacctccactaatacattgtgacttgaagccaagcaatattcttttggatcttgacatggttgcatatgtcagtgacttcggttcagcaagatttctatgtccaaaatcaaacttggatcaagagagtgtaacaagtttgggttgccttaaaggaacagttggatacatcccaccagaatatggcatgagcaaagaaatatcaacaaaggccgatgtttatagttttggagtgattctattagaaatgataacaggtattagcccaacggatgaaatttttagtgatggcacaagcctgcatgaacttgttgctggagaattcgccaaaaattcctacaatttaattgatcccaccatgctacaagatgaaatagatgcaactgaaataatgatgaattgcgttattccattggtgagaacaggactctcttgctcagttacttctcccaaagaccgatgtgaaattggccatgtttgtagtgaaatccttagaatcaggcatgagttatcaaagatagatggtgaatga
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| Protein seq | MASSQIVLSPGHGLLLFPLKFLFFLPLVLTGGTEDDRQALLCFMSQLSAPSRALASWSNTSMEFCSWQGITCSSQSPRRAIALDLSSQGITGSIPPCIANLTFLTVLQLSNNSFHGSIPSELGLLNQLSYLNLSTNSLEGNIPSELSSCSQLKILDLSNNNLQGSIPSAFGDLPLLQKLVLANSRLAGEIPESLGSSISLTYVDLGNNALTGRIPESLVNSSSLQVLRLMRNALSGQLPTNLFNSSSLTDICLQQNSFVGTIPPVTAMSSQVKYLDLSDNNLIGTMPSSLGNLSSLIYLRLSRNILLGSIPESLGHVATLEVISLNSNNLSGSIPPSLFNMSSLTFLAMTNNSLIGKIPSNIGYTLPNIQELYLSDVKFDGSIPASLLNASNLQTFYLANCGLTGSIPPLGSLPNLQKLDLGFNMFEADGWSFVSSLTNCSRLTRLMLDGNNIQGNLPNTIGNLSSDLQWLWLGGNNISGSIPPEIGNLKGLTKLYMDCNLLTGNIPPTIGNLHNLVDLNFTQNYLSGVIPDAIGNLLQLTNLRLDRNNFSGSIPASIGQCTQLTTLNLAYNSLNGSIPSNIFQIYSLSVVLDLSHNYLSGGMPEEVGNLVNLNKLSISNNRLSGEVPSTLGECVLLESVEMQSNFLVGSIPQSFAKLVGIKIMDISQNKLSGKIPEFLTSFSSVYYLNLSFNNFYGEIPIGGVFSNASVVSVEGNDGLCAWAPTKGIRFCSSLADRESMHKKLVLTLKIIISFVIVTITLCCVLVARSRKGMKLKPQLLPFNQHLEQITYEDIVKATKSFSSDNLIGSGSFGMVYKGNLEFRQDQVAIKIFNLNIYGANRSFVAECEALRNVRHRNIIKIITSCSSVDSEGADFKALVFEYMKNGNLEMWLHPKKHEHSQRNALTFSQRVNIVLEVAFALDYLHNHCVPPLIHCDLKPSNILLDLDMVAYVSDFGSARFLCPKSNLDQESVTSLGCLKGTVGYIPPEYGMSKEISTKADVYSFGVILLEMITGISPTDEIFSDGTSLHELVAGEFAKNSYNLIDPTMLQDEIDATEIMMNCVIPLVRTGLSCSVTSPKDRCEIGHVCSEILRIRHELSKIDGE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.016152 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0585950 | RBH | 0.070643 | 0.0 | 0.654055 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38590 | RBH | 0.046351 | 0.0 | 0.170067 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0585950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020780 | SBH | 0.134115 | 1.062366 | 0.983788 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020540 | RBH | 0.072620 | 0.554062 | 0.855523 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020730 | SBH | 0.119523 | 0.974873 | 2.135322 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0008330 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020830 | RBH | 0.318380 | 0.370122 | 1.666568 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0362600 | RBH | 0.0040225 | 1.273788 | 0.0118415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020250 | RBH | 0.0 | 0.045285 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0338500 | RBH | 0.340277 | 0.3180275 | 4.216307 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020700 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020730 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020340 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0021030 | RBH | 0.0 | 0.000000 | 0.043257 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020500 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020400 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020660 | RBH | 0.0 | 1.052179 | 1.222393 |
