Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_06g0015430 | OGI:04049090 | 3/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr06:15645212-15645397 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAAGGGCTGCGGGCGAACAGGTTTCGTCCACCCACGCCCTTCGCCATAGTGCCAATAAGGCACGGCGTCAAGGGCTGCGGGCGAACAGGTTTCGCCAACCAACGCCTTTCGCCATAGTGCCAATATGGCACGGCGTCAAGGGCTGCGGGCGAAGAGGTTTCGCCACACGCCATACCCTTCGCCAT |
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| CDS seq | ATGGCGAAGGGTATGGCGTGTGGCGAAACCTCTTCGCCCGCAGCCCTTGACGCCGTGCCATATTGGCACTATGGCGAAAGGCGTTGGTTGGCGAAACCTGTTCGCCCGCAGCCCTTGACGCCGTGCCTTATTGGCACTATGGCGAAGGGCGTGGGTGGACGAAACCTGTTCGCCCGCAGCCCTTGA |
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| Protein seq | MAKGMACGETSSPAALDAVPYWHYGERRWLAKPVRPQPLTPCLIGTMAKGVGGRNLFARSP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_06g0015430 | OsARC_06g0015430.01 | Chr06 | 15645212 | 15645397 | - | NAM | ||
| CDS seq | ATGGCGAAGGGTATGGCGTGTGGCGAAACCTCTTCGCCCGCAGCCCTTGACGCCGTGCCATATTGGCACTATGGCGAAAGGCGTTGGTTGGCGAAACCTGTTCGCCCGCAGCCCTTGACGCCGTGCCTTATTGGCACTATGGCGAAGGGCGTGGGTGGACGAAACCTGTTCGCCCGCAGCCCTTGA |
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| Protein seq | MAKGMACGETSSPAALDAVPYWHYGERRWLAKPVRPQPLTPCLIGTMAKGVGGRNLFARSP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g22770 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0006770 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0007390 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0007300 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0015450 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0015570 | SBH | 0.000000 | 0.000000 | 4.166964 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0238500 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0015040 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0115000 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003840 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004070 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0003880 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0015800 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0003930 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004110 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003850 | SBH | 0.0 | 0.0 | 0.0 |
