Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_05g0002530 | OGI:05006100 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr05:2076339-2078490 | ||||||||
| Gene Symbol | prx71, Osprx71 | ||||||||||
| DNA seq | ACAGCCATTTCACTAGACAGCTTAGCTAGCAGGTAGCTGAGAGAGTTCCTTCGATCTCGATCTCTGCACGGCGACGATAAGATAAGCAATGGCAGTCTCGTCGCCGGCGCCGTCGTCTCTGCATGTGCCGATGGCCGCTGCGGCACTATTAGGGATGCTGATGATGATGTCGTCGGCGCCGGAGATGAAGGTGGAGGCGGCCGGCGGGTTGTCCGTCGGGTTCTACGCCGAATCGTGCCCCAAGGCGGAGGCAATCGTCCGGGACACAGTGACCAAGGCGTTCGAGAAGGCGCCCGGCACGCCGGCCGACCTCATCCGCCTCTTCTTCCACGACTGCTTCGTCCGCGTAAGTATAGCACCCCGCTTACGTGGATGCATCGTGTCCGTGCCACGTGTACTCACTAGGCAGCTTTGTGCTTACGTGGACGCACCATGTCGTGCCACGTGTACTTACAAGTCGGCTATTAGCTTATGTTGACGCACCATATCGTGCCATGTGTTCTAACTAGGCAGCTATATATGACTCTCTAGGGATGTGACGCATCGGTGTTGCTGGAGTCGACACCAGGGAACAAGGCGGAGAGGGACAACAAGGCGAACAACCCTAGCTTGGATGGGTTTGACGTCGTCGATGATGCCAAGGACCTCCTCGAGAAGGAGTGTCCACACACCGTCTCCTGCGCCGACATCCTCTCTCTCGTGGCTCGTGATAGCGCCTACCTTGCTGGTGGGCTCGACTTCGAGATCCCAACAGGTCGTCGTGATGGCTTCGTCTCTAAGGAGGATGAGGTCCTCTCCAACGTCCCTCACCCGGAGTTCGGTGCCAAAGACCTCCTCAAAAACTTCACTGCTAAAGGTACATATTATATACTTGTACTACATAGATACGCATATCATCGGTAACAATTTCATGGGGTCATTATATGCACTTGCCAGTTTATCTAAAGTCTTGTTAATGCTCTCCCTCGTACCGATGTCCCATAAATCATCATAGAGCGAGTTATGAATGCAAGATAGTGAGAGTTGTTTAGCTCTGATATACGGAAAGTGTTTTTATCCCTCGAGAGGATATCCCAACGTTTATGATTGCCACTTAAATAGTTATAAAAGTATGAAAAAAATTAACAAGATAGATTAATATAATATATATCACTCTATAAACATACAAGTTAAAATTTAACTTTTACAAGTTGTATTAAATATAACTGCAAATATTCAATAATTATTTTCAATTTAATTTGTTCTTTTGGTTGTAACTCGTAGAGTCGAATTTGACTTTTATGTTTATAGAGTGATCTATATTTTATATTAAATTATCTTGTCAATTTTTTAAAAAATTTAGTAACTATTTAGATGACATACAACCAACAAAGAAATATCCTCTAATACCATATTAATGATATACGATTACTTAGGTTTTACGGCGGAGGAGATGGTGACGCTGTCGGGGGCGCACTCTATCGGCACGTCTCACTGCTCATCGTTCACAAACCGGCTGTACAAGTACTACGGCACGTACGGCACGGACCCGTCGATGCCGGCGGCGTACGCGGCGGACATGAAGAGCAAGTGCCCGCCGGAGACGGCGGCGCAGCAGGACGCGACGATGGTGCAGCTCGACGACGTGACGCCGTTCAAGATGGACAACCAGTACTACAGGAACGTGCTCGCCGGGAACGTCACGTTCGCCTCCGACGTGGCCCTCCTCGACACGCCGGAGACGGCGGCGCTCGTCAGGCTCTACGCCGCCGGCGACCCCGCAGCCTGGCTCGCCCGCTTCGCCGCCGCGCTGGTCAAGGTCAGCAAGCTCGACGTGCTCACCGGCGGCGAGGGGGAGATCAGGCTCAACTGCTCCAGGATCAACTAATTAACTCAAATTAAATTCGCGTGAAGTTTGTGATTCTCATATATACAAACACTACTGCCCTGTTGCCATGCATGCATGAGGCTCATTTGATTTATTTTTCTTTATATGTTTGTGCATGATTCAATGTACTACTACTACAACAACAACTTTTGTTTATTTTTATTTTCAGTTTCATTTTTTACCTTTTGATGCTGAGTGTGCCAATTGGGCAAAAATAAATTGTGCTTCTGACCATATATATGGGTGAATTTATTCAAGGAGTAAAATGTGTGCTATTCATGTTTT
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| CDS seq | ATGGCAGTCTCGTCGCCGGCGCCGTCGTCTCTGCATGTGCCGATGGCCGCTGCGGCACTATTAGGGATGCTGATGATGATGTCGTCGGCGCCGGAGATGAAGGTGGAGGCGGCCGGCGGGTTGTCCGTCGGGTTCTACGCCGAATCGTGCCCCAAGGCGGAGGCAATCGTCCGGGACACAGTGACCAAGGCGTTCGAGAAGGCGCCCGGCACGCCGGCCGACCTCATCCGCCTCTTCTTCCACGACTGCTTCGTCCGCGTAAGTATAGCACCCCGCTTACGTGGATGCATCGTGTCCGTGCCACCTTTGTGCTTACGTGGACGCACCATGTCGTGCCACGTGTACTTACAAGTCGGCTATTAG |
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| Protein seq | MAVSSPAPSSLHVPMAAAALLGMLMMMSSAPEMKVEAAGGLSVGFYAESCPKAEAIVRDTVTKAFEKAPGTPADLIRLFFHDCFVRVSIAPRLRGCIVSVPPLCLRGRTMSCHVYLQVGY |
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| Function | Peroxidase 27 [UniProtKB/Swiss-Prot:Q43735] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_05g0002530 | OsARC_05g0002530.01 | Chr05 | 2076427 | 2076806 | + | NAM | ||
| CDS seq | ATGGCAGTCTCGTCGCCGGCGCCGTCGTCTCTGCATGTGCCGATGGCCGCTGCGGCACTATTAGGGATGCTGATGATGATGTCGTCGGCGCCGGAGATGAAGGTGGAGGCGGCCGGCGGGTTGTCCGTCGGGTTCTACGCCGAATCGTGCCCCAAGGCGGAGGCAATCGTCCGGGACACAGTGACCAAGGCGTTCGAGAAGGCGCCCGGCACGCCGGCCGACCTCATCCGCCTCTTCTTCCACGACTGCTTCGTCCGCGTAAGTATAGCACCCCGCTTACGTGGATGCATCGTGTCCGTGCCACCTTTGTGCTTACGTGGACGCACCATGTCGTGCCACGTGTACTTACAAGTCGGCTATTAG
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| Protein seq | MAVSSPAPSSLHVPMAAAALLGMLMMMSSAPEMKVEAAGGLSVGFYAESCPKAEAIVRDTVTKAFEKAPGTPADLIRLFFHDCFVRVSIAPRLRGCIVSVPPLCLRGRTMSCHVYLQVGY |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_05g0002530 | OsARC_05g0002530.02 | Chr05 | 2076339 | 2078490 | + | IsoSeq | ||
| CDS seq | ATGGGTTTGACGTCGTCGATGATGCCAAGGACCTCCTCGAGAAGGAGTGTCCACACACCGTCTCCTGCGCCGACATCCTCTCTCTCGTGGCTCGTGATAGCGCCTACCTTGCTGGTGGGCTCGACTTCGAGATCCCAACAGGTCGTCGTGATGGCTTCGTCTCTAAGGAGGATGAGGTCCTCTCCAACGTCCCTCACCCGGAGTTCGGTGCCAAAGACCTCCTCAAAAACTTCACTGCTAAAGGTTTTACGGCGGAGGAGA
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| Protein seq | MGLTSSMMPRTSSRRSVHTPSPAPTSSLSWLVIAPTLLVGSTSRSQQVVVMASSLRRMRSSPTSLTRSSVPKTSSKTSLLKVLRRRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.023437 | 3.115589 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0135500 | RBH | 0.0 | 0.176696 | 1.900104 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g04500 | RBH | 0.0 | 0.117590 | 0.483968 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0135500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0002560 | RBH | 0.0 | 185.385742 | 26.840940 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0002590 | RBH | 0.327781 | 17.212933 | 1.579390 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002590 | RBH | 0.344074 | 90.023338 | 14.193130 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0012860 | SBH | 0.0 | 0.732414 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0002630 | RBH | 0.803405 | 27.141714 | 22.577871 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0031500 | RBH | 48.437 | 12.0547615 | 0.0150615 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0002500 | SBH | 0.000000 | 10.882762 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0030900 | RBH | 29.3333195 | 0.0874745 | 0.323442 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0002540 | RBH | 0.000000 | 0.640371 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0002460 | RBH | 1.290742 | 64.880241 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002570 | RBH | 0.0 | 147.619629 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0002600 | RBH | 2.021781 | 8.018285 | 6.478323 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002630 | RBH | 0.416395 | 48.551849 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G002470 | RBH | 0.111431 | 5.331368 | 4.085647 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0002650 | RBH | 0.342891 | 29.321560 | 10.782074 |
