Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_04g0029500 | OGI:04098230 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:32185220-32187893 | ||||||||
| Gene Symbol | RLCK168, OsRLCK168 | ||||||||||
| DNA seq | atccgtaggcgatttggtgattggcgagagctccgactttcgccaaagattcagcgtttgttattgttagtcaagaacggctgcgcggtgcgcacgtacgtgtgcttttcctgatccactaattctcaggccatagctgcagacagtcagacatcctctgatcctctccattcagagaggcaaaacggggcctcttatcattttggatcctccatctcttgatttagctgcgaaaaacagctcgtcgacatgcagtaagaatgaagaacatcaagctcaaggaagttatctagattctactagacaagtaagccttttttttctctgtgcccagttgatctcttcttcacttggTtttcatagttcagttgtgttgtgatcttcttctgtgttcctcagctgcaaaccaagttctactggttgttcttctccttttcagtggaatcagaccaagccttttgcgtgttcttgaaaaacatcgttctgagtcttgtagacaccataaacaaacacagttgacatgtgttcctgtcatgcaggccacaagtgattcttttgagttctgagatgattttgttcatgcatgaagtcctttctgaagtttattatggtgaactaaatatattttctgtaatccttaaatttaagcacgtggtgtagttccatctgttggcacatttgtaaatttaattcgtattttttttgtcttcacgccggccgccgggcggctaaatccgtacaaagaataatcgcccacactcacccacacacaCccaaaagaaaaaaaaaaaggctccaaaacaaagcagagttgttagttgttcctttcttttctatgaggaaatcaaaagcaaactaactgtgctcagctcagattaattctgaattaatcaaactaatggtggaactggtgaaatgtgaatagtacaaactatcaatgttaccttacaatcaagatatattactgctaattaaaatttgcaataatatctctgatttttatgcttgtctgatctatgcaatgacgtactagtacgcaaactccagagtcaagacaagctcaattagagaacgaatgtgagcatgtctactgctgttgccataagtaagtaccaagattaattagtactatcaccatggcaaaataaaagaccaagattttgcttatctaactgttcgtctcacctcactggtttcttcagtatcgtcagtctcggcaaccgcggctgcagtagtgatgctcgctctgatcaagcgatgccgccgctacaggaggaagatgaagaagaagatgctagctaggatcgCccacgaggcgaccgaacagcaccgcgagatggaagcccgcgacgcggcggacagcgtgatgatcgagatcggccccgtggagaagttcctcaacgagatcctcagcgagaagccgatgcgcttcacctccgagcagctggcggcgtgcaccgggaactactcgtcggagctcggctccggcgggttcggcgtggtctacaggggggagctgcccaacggcctgcaggtcgccgtgaaggtgctcaaggtgtccatgaacaagaaggtccaggaggcgttcatggcggagatcggcaccatcgggaggacgtaccacgtccacctcgtcaggctctacggcttctgcttcgacgccgacaccaaggcgctggtctacgagttcttggagaacggctcgctggagaagtacctctacggcggcggcggcgaggacagggggaagaagctggagtggcggacgctgcacgacatcgccgtcggcacggcgaaggggatcaggtacctccacgaggagtgccagcagcggatcgtgcactacgacatcaagccggcgaatatcctcctcaccgccgacttcaccccgaaggttgccgacttcgggctggcgaggctgggcgagcgggagaacacgcacatgtcgctgacgggcgggcgcggcacgcccgggtacgcggcgccggagctgtggatggcgctaccggcgacggagaagtgcgacgtgtacagcttcgggatggtgctgttcgaggtgctggggcggcggcggaactacgacctcgccgcgcaggcggagagccaggagtggttccccaagtgggtgtgggacaggtacgagcagggggacatggagtgcgtcgtgtccgccgccggcatcggggaagaggacagggcgaaggcggagatgatgtgcaaggtggcgctgtggtgcgtgcagttccagccgtcggcgcggccgacgatgagcagcgtggtgcggatgctggaGggggagatggccatcgtcccgccggtgaaccccttccactacgtcatgagcggcggcagcggcagctcgacgctgacgagcagcagcacgaacctgagcagcgggggcaccactacaggaagcagcgaggtggcggtcagccttcctgccaaaaagtccacggacgtcatggttgaatagtgtaagtccaagtgaaaatgttgtcccttctccctttgtacaacggtaccagcaagacaaagatttcgtacatattttatcgtcataatgttgttgtaattatatttgttaataatgtaattattttttacctctgtttatgagtttactagtaccggattttgaatcactttctaaaaaagaataaaagaaatgtgtgaa
More
|
||||||||||
| CDS seq | atgtctactgctgttgccataatatcgtcagtctcggcaaccgcggctgcagtagtgatgctcgctctgatcaagcgatgccgccgctacaggaggaagatgaagaagaagatgctagctaggatcgCccacgaggcgaccgaacagcaccgcgagatggaagcccgcgacgcggcggacagcgtgatgatcgagatcggccccgtggagaagttcctcaacgagatcctcagcgagaagccgatgcgcttcacctccgagcagctggcggcgtgcaccgggaactactcgtcggagctcggctccggcgggttcggcgtggtctacaggggggagctgcccaacggcctgcaggtcgccgtgaaggtgctcaaggtgtccatgaacaagaaggtccaggaggcgttcatggcggagatcggcaccatcgggaggacgtaccacgtccacctcgtcaggctctacggcttctgcttcgacgccgacaccaaggcgctggtctacgagttcttggagaacggctcgctggagaagtacctctacggcggcggcggcgaggacagggggaagaagctggagtggcggacgctgcacgacatcgccgtcggcacggcgaaggggatcaggtacctccacgaggagtgccagcagcggatcgtgcactacgacatcaagccggcgaatatcctcctcaccgccgacttcaccccgaaggttgccgacttcgggctggcgaggctgggcgagcgggagaacacgcacatgtcgctgacgggcgggcgcggcacgcccgggtacgcggcgccggagctgtggatggcgctaccggcgacggagaagtgcgacgtgtacagcttcgggatggtgctgttcgaggtgctggggcggcggcggaactacgacctcgccgcgcaggcggagagccaggagtggttccccaagtgggtgtgggacaggtacgagcagggggacatggagtgcgtcgtgtccgccgccggcatcggggaagaggacagggcgaaggcggagatgatgtgcaaggtggcgctgtggtgcgtgcagttccagccgtcggcgcggccgacgatgagcagcgtggtgcggatgctggaGggggagatggccatcgtcccgccggtgaaccccttccactacgtcatgagcggcggcagcggcagctcgacgctgacgagcagcagcacgaacctgagcagcgggggcaccactacaggaagcagcgaggtggcggtcagccttcctgccaaaaagtccacggacgtcatggttgaatag
More
|
||||||||||
| Protein seq | MSTAVAIISSVSATAAAVVMLALIKRCRRYRRKMKKKMLARIAHEATEQHREMEARDAADSVMIEIGPVEKFLNEILSEKPMRFTSEQLAACTGNYSSELGSGGFGVVYRGELPNGLQVAVKVLKVSMNKKVQEAFMAEIGTIGRTYHVHLVRLYGFCFDADTKALVYEFLENGSLEKYLYGGGGEDRGKKLEWRTLHDIAVGTAKGIRYLHEECQQRIVHYDIKPANILLTADFTPKVADFGLARLGERENTHMSLTGGRGTPGYAAPELWMALPATEKCDVYSFGMVLFEVLGRRRNYDLAAQAESQEWFPKWVWDRYEQGDMECVVSAAGIGEEDRAKAEMMCKVALWCVQFQPSARPTMSSVVRMLEGEMAIVPPVNPFHYVMSGGSGSSTLTSSSTNLSSGGTTTGSSEVAVSLPAKKSTDVMVE |
||||||||||
| Function | Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0029500 | OsARC_04g0029500.01 | Chr04 | 32185220 | 32187893 | + | NAM | ||
| CDS seq | atgctcgctctgatcaagcgatgccgccgctacaggaggaagatgaagaagaagatgctagctaggatcgCccacgaggcgaccgaacagcaccgcgagatggaagcccgcgacgcggcggacagcgtgatgatcgagatcggccccgtggagaagttcctcaacgagatcctcagcgagaagccgatgcgcttcacctccgagcagctggcggcgtgcaccgggaactactcgtcggagctcggctccggcgggttcggcgtggtctacaggggggagctgcccaacggcctgcaggtcgccgtgaaggtgctcaaggtgtccatgaacaagaaggtccaggaggcgttcatggcggagatcggcaccatcgggaggacgtaccacgtccacctcgtcaggctctacggcttctgcttcgacgccgacaccaaggcgctggtctacgagttcttggagaacggctcgctggagaagtacctctacggcggcggcggcgaggacagggggaagaagctggagtggcggacgctgcacgacatcgccgtcggcacggcgaaggggatcaggtacctccacgaggagtgccagcagcggatcgtgcactacgacatcaagccggcgaatatcctcctcaccgccgacttcaccccgaaggttgccgacttcgggctggcgaggctgggcgagcgggagaacacgcacatgtcgctgacgggcgggcgcggcacgcccgggtacgcggcgccggagctgtggatggcgctaccggcgacggagaagtgcgacgtgtacagcttcgggatggtgctgttcgaggtgctggggcggcggcggaactacgacctcgccgcgcaggcggagagccaggagtggttccccaagtgggtgtgggacaggtacgagcagggggacatggagtgcgtcgtgtccgccgccggcatcggggaagaggacagggcgaaggcggagatgatgtgcaaggtggcgctgtggtgcgtgcagttccagccgtcggcgcggccgacgatgagcagcgtggtgcggatgctggaGggggagatggccatcgtcccgccggtgaaccccttccactacgtcatgagcggcggcagcggcagctcgacgctgacgagcagcagcacgaacctgagcagcgggggcaccactacaggaagcagcgaggtggcggtcagccttcctgccaaaaagtccacggacgtcatggttgaatag
More
|
|||||||
| Protein seq | MLALIKRCRRYRRKMKKKMLARIAHEATEQHREMEARDAADSVMIEIGPVEKFLNEILSEKPMRFTSEQLAACTGNYSSELGSGGFGVVYRGELPNGLQVAVKVLKVSMNKKVQEAFMAEIGTIGRTYHVHLVRLYGFCFDADTKALVYEFLENGSLEKYLYGGGGEDRGKKLEWRTLHDIAVGTAKGIRYLHEECQQRIVHYDIKPANILLTADFTPKVADFGLARLGERENTHMSLTGGRGTPGYAAPELWMALPATEKCDVYSFGMVLFEVLGRRRNYDLAAQAESQEWFPKWVWDRYEQGDMECVVSAAGIGEEDRAKAEMMCKVALWCVQFQPSARPTMSSVVRMLEGEMAIVPPVNPFHYVMSGGSGSSTLTSSSTNLSSGGTTTGSSEVAVSLPAKKSTDVMVE
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0029500 | OsARC_04g0029500.02 | Chr04 | 32185220 | 32187893 | + | NAM | ||
| CDS seq | atgtctactgctgttgccataatatcgtcagtctcggcaaccgcggctgcagtagtgatgctcgctctgatcaagcgatgccgccgctacaggaggaagatgaagaagaagatgctagctaggatcgCccacgaggcgaccgaacagcaccgcgagatggaagcccgcgacgcggcggacagcgtgatgatcgagatcggccccgtggagaagttcctcaacgagatcctcagcgagaagccgatgcgcttcacctccgagcagctggcggcgtgcaccgggaactactcgtcggagctcggctccggcgggttcggcgtggtctacaggggggagctgcccaacggcctgcaggtcgccgtgaaggtgctcaaggtgtccatgaacaagaaggtccaggaggcgttcatggcggagatcggcaccatcgggaggacgtaccacgtccacctcgtcaggctctacggcttctgcttcgacgccgacaccaaggcgctggtctacgagttcttggagaacggctcgctggagaagtacctctacggcggcggcggcgaggacagggggaagaagctggagtggcggacgctgcacgacatcgccgtcggcacggcgaaggggatcaggtacctccacgaggagtgccagcagcggatcgtgcactacgacatcaagccggcgaatatcctcctcaccgccgacttcaccccgaaggttgccgacttcgggctggcgaggctgggcgagcgggagaacacgcacatgtcgctgacgggcgggcgcggcacgcccgggtacgcggcgccggagctgtggatggcgctaccggcgacggagaagtgcgacgtgtacagcttcgggatggtgctgttcgaggtgctggggcggcggcggaactacgacctcgccgcgcaggcggagagccaggagtggttccccaagtgggtgtgggacaggtacgagcagggggacatggagtgcgtcgtgtccgccgccggcatcggggaagaggacagggcgaaggcggagatgatgtgcaaggtggcgctgtggtgcgtgcagttccagccgtcggcgcggccgacgatgagcagcgtggtgcggatgctggaGggggagatggccatcgtcccgccggtgaaccccttccactacgtcatgagcggcggcagcggcagctcgacgctgacgagcagcagcacgaacctgagcagcgggggcaccactacaggaagcagcgaggtggcggtcagccttcctgccaaaaagtccacggacgtcatggttgaatag
More
|
|||||||
| Protein seq | MSTAVAIISSVSATAAAVVMLALIKRCRRYRRKMKKKMLARIAHEATEQHREMEARDAADSVMIEIGPVEKFLNEILSEKPMRFTSEQLAACTGNYSSELGSGGFGVVYRGELPNGLQVAVKVLKVSMNKKVQEAFMAEIGTIGRTYHVHLVRLYGFCFDADTKALVYEFLENGSLEKYLYGGGGEDRGKKLEWRTLHDIAVGTAKGIRYLHEECQQRIVHYDIKPANILLTADFTPKVADFGLARLGERENTHMSLTGGRGTPGYAAPELWMALPATEKCDVYSFGMVLFEVLGRRRNYDLAAQAESQEWFPKWVWDRYEQGDMECVVSAAGIGEEDRAKAEMMCKVALWCVQFQPSARPTMSSVVRMLEGEMAIVPPVNPFHYVMSGGSGSSTLTSSSTNLSSGGTTTGSSEVAVSLPAKKSTDVMVE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr04 | 32185526 | 32186422 | + | OsARC_04g0029500.02 | OsARC_04g0029500.01,OsARC_04g0029500.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.230907 | 0.021210 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0655300 | RBH | 4.083977 | 5.241428 | 0.922028 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g56110 | RBH | 3.534430 | 4.563599 | 0.236886 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0655300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0029350 | RBH | 1.083042 | 1.606309 | 2.107772 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0030110 | RBH | 0.345251 | 1.153761 | 1.884855 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0029680 | RBH | 4.061913 | 0.0 | 2.930315 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0029520 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0029770 | RBH | 3.800956 | 5.760393 | 5.483705 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0526600 | RBH | 2.002889 | 8.790124 | 1.112468 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0028400 | RBH | 0.442425 | 0.084039 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0531100 | RBH | 2.8222305 | 20.164916 | 0.0344115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0028850 | RBH | 0.282013 | 0.110683 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0028690 | RBH | 0.491797 | 8.151151 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0028800 | RBH | 0.000000 | 15.742463 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0029380 | RBH | 0.502485 | 0.669354 | 0.432461 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0029360 | RBH | 0.304576 | 0.798312 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G028820 | RBH | 1.313726 | 0.468119 | 1.302987 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0028600 | RBH | 1.734027 | 10.413932 | 2.879002 |
