Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os04g56110 OGI:04098230 | 16/16 Nipponbare | IRGSP 1.0 | MSU Chr04:33418505-33421204
Gene Symbol RLCK168, OsRLCK168
DNA seq

CCGTAGGCGATTTGGTGATTGGCGAGAGCTCCGACTTTCGCCAAAGATTCAGCGTTTGTTATTGTTAGTCAAGAACGGCTGCGCGGTGCGCGCGTACGTGTGCTTTTCCTGATCCACTAATTCTCAGGCCATAGCTGCAGACAGTCAGACATCCTCTGATCCTCTCCATCCAGAGAGGCAAAACGGGGCCTCTTATCATTTTGGATCCTCCATGAGATGAGCTCAATGATTTAGCTGCGAAAAACAGCTCGTCGACATGCAGTAAGAATGAAGAACATCAAGCTCAAGGAAGTTATCTAGATTCTACTAGACAAGTAAGCCTTTTTTTTTTCTCTGTGCCCAGTTGATCTCTTCTTCATTTGGTTTTCATAGTTCAGTTGTGTTGTGATCTTCTTCTGTGTTCCTCAGCTGCAAACCAAGTTCTACTGGTTGTTCTTCTCCTTTTCAGTGGAATCAGACCAAGCCTTTTACGTGTTCTTGAAAAACATCGTTCTGAGTCTTGTAGACACCATAAACAAACACAGTTGACATGTGTTCCTGTCATGCAGGCCACAAGTGATTCTTTTGAGTTCTGAGATGATTTTGTTCATGCATGAAGTCCTTTCTGAAGTTTATTATGGTGAACTAAATATATTTTCTGTAATCCTTAAATTTAAGCACGTGGTGTAGTTCCATCTGTTGGCACATTTGTAAACTTAATTCGTATTTTTTTTTGTCTTCACGCCGGCCGCCGGGCGGCTAAATCCGTACAAAGAATAATCGCCCACACTCACCCACACACACACCCAAAAGAAAAAAAAAAGGCTCCAAAACAAAGCAGAGTTGTTAGTTGTTCCTTTCTTTTCTATGAGGAAATCAAAAGCAAACTAACTGTGCTCAGCTCAGATTAATTCTGAATTAATCAAACTAATGGTGGAACTGGTGAAATGTGAATAGTACAAACTATCAATGTTACCTTACAATCAAGATATATTACTGCTAATTAAAATGTGCAATGATATCTCTGATTTTTATGCTTGTCTGATCTATGCAATGACGTACTAGTACGCAAACTCCAGAGTAAAGACAAGCTCAATTAGAGAACGAATGTGAGCATGTCTACTGCTGTTGCCATAAGTAAGTACCAAGATTAATTAGTACTATCACCATGGCAAAATAAAAGACCAAGATTTTGCTTATCTAACTGTTCGTCTCACCTCACTGGTTTCTTCAGTATCGTCAGTCTCGGCAACCGCGGCTGCAGTAGTGATGCTCGCTCTGATCAAGCGATGCCGCCGCTACAGGAGGAAGATGAAGAAGAAGATGCTAGCTAGGATCGCCCACGAGGCGACCGAACAGCACCGCGAGATGGAAGCCCGCGACGCGGCGGACAGCGTGATGATCGAGATCGGCCCCGTGGAGAAGTTCCTCAACGAGATCCTCAGCGAGAAGCCGATGCGCTTCACCTCCGAGCAGCTGGCGGCGTGCACCGGGAACTACTCGTCGGAGCTCGGCTCCGGCGGGTTCGGCGTGGTCTACAGGGGGGAGCTGCCCAAAGGCCTGCAGGTCGCCGTGAAGGTGCTCAAGGTGTCCATGAACAAGAAGGTCCAGGAGGCGTTCATGGCGGAGATCGGCACCATCGGGAGGACGTACCACGTCCACCTCGTCAGGCTCTACGGCTTCTGCTTCGACGCCGACACCAAGGCGCTGGTCTACGAGTTCTTGGAGAACGGCTCGCTGGAGAAGTACCTCTACGGCGGCGGCGGCGAGGACAGGGGGAAGAAGCTGGAGTGGCGGACGCTGCACGACATCGCCGTCGGCACGGCGAAGGGGATCAGGTACCTCCACGAGGAGTGCCAGCAGCGGATCGTGCACTACGACATCAAGCCGGCGAATATCCTCCTCACCGCCGACTTCACCCCGAAGGTTGCCGACTTCGGGCTGGCGAGGCTGGGCGAGCGGGAGAACACGCACATGTCGCTGACGGGCGGGCGCGGCACGCCCGGGTACGCGGCGCCGGAGCTGTGGATGGCGCTACCGGCGACGGAGAAGTGCGACGTGTACAGCTTCGGGATGGTGCTGTTCGAGGTGCTGGGGCGGCGGCGGAACTACGACCTCGCCGCGCAGGCGGAGAGCCAGGAGTGGTTCCCCAAGTGGGTGTGGGACAGGTACGAGCAGGGGGACATGGAGTGCGTCGTGTCCGCCGCCGGCATCGGGGAAGAGGACAGGGCGAAGGCGGAGATGATGTGCAAGGTGGCGCTGTGGTGCGTGCAGTTCCAGCCGTCGGCGCGGCCGAAGATGAGCAGCGTGGTGCGGATGCTGGAGGGGGAGATGGCCATCGTCCCGCCGGTGAACCCCTTCCACTACGTCATGAGCGGCGGCAGCGGCAGCTCGACGCTGACGAGCAGCAGCACGAACCTGAGCAGCGGGGGCACCACTACAGGAAGCAGCGAGGTGGCGGTCAGCCTTCCTGCCAAAAAGTCCACGGACGTCATGGTTGAATAGTCTAAGTCCAAGTGAAAATGTTGACCCTTCTCCCTTTGTACAACGGTACCAGCGAGACAAAGATTTCGTACATATTTTATCGTCATAATGTTGTTGCAATTATATTTGTTAATAATGTAATTATTTTTTACCTCTGTTTATGAGTTTACTAGTACCGGATTTTGAATCACTTTCTAAAAAAGAATAAAAGAAATGTGTGAATTTTCGTAGGAAAAA

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CDS seq

ATGTCTACTGCTGTTGCCATAATATCGTCAGTCTCGGCAACCGCGGCTGCAGTAGTGATGCTCGCTCTGATCAAGCGATGCCGCCGCTACAGGAGGAAGATGAAGAAGAAGATGCTAGCTAGGATCGCCCACGAGGCGACCGAACAGCACCGCGAGATGGAAGCCCGCGACGCGGCGGACAGCGTGATGATCGAGATCGGCCCCGTGGAGAAGTTCCTCAACGAGATCCTCAGCGAGAAGCCGATGCGCTTCACCTCCGAGCAGCTGGCGGCGTGCACCGGGAACTACTCGTCGGAGCTCGGCTCCGGCGGGTTCGGCGTGGTCTACAGGGGGGAGCTGCCCAAAGGCCTGCAGGTCGCCGTGAAGGTGCTCAAGGTGTCCATGAACAAGAAGGTCCAGGAGGCGTTCATGGCGGAGATCGGCACCATCGGGAGGACGTACCACGTCCACCTCGTCAGGCTCTACGGCTTCTGCTTCGACGCCGACACCAAGGCGCTGGTCTACGAGTTCTTGGAGAACGGCTCGCTGGAGAAGTACCTCTACGGCGGCGGCGGCGAGGACAGGGGGAAGAAGCTGGAGTGGCGGACGCTGCACGACATCGCCGTCGGCACGGCGAAGGGGATCAGGTACCTCCACGAGGAGTGCCAGCAGCGGATCGTGCACTACGACATCAAGCCGGCGAATATCCTCCTCACCGCCGACTTCACCCCGAAGGTTGCCGACTTCGGGCTGGCGAGGCTGGGCGAGCGGGAGAACACGCACATGTCGCTGACGGGCGGGCGCGGCACGCCCGGGTACGCGGCGCCGGAGCTGTGGATGGCGCTACCGGCGACGGAGAAGTGCGACGTGTACAGCTTCGGGATGGTGCTGTTCGAGGTGCTGGGGCGGCGGCGGAACTACGACCTCGCCGCGCAGGCGGAGAGCCAGGAGTGGTTCCCCAAGTGGGTGTGGGACAGGTACGAGCAGGGGGACATGGAGTGCGTCGTGTCCGCCGCCGGCATCGGGGAAGAGGACAGGGCGAAGGCGGAGATGATGTGCAAGGTGGCGCTGTGGTGCGTGCAGTTCCAGCCGTCGGCGCGGCCGAAGATGAGCAGCGTGGTGCGGATGCTGGAGGGGGAGATGGCCATCGTCCCGCCGGTGAACCCCTTCCACTACGTCATGAGCGGCGGCAGCGGCAGCTCGACGCTGACGAGCAGCAGCACGAACCTGAGCAGCGGGGGCACCACTACAGGAAGCAGCGAGGTGGCGGTCAGCCTTCCTGCCAAAAAGTCCACGGACGTCATGGTTGAATAG

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Protein seq

MSTAVAIISSVSATAAAVVMLALIKRCRRYRRKMKKKMLARIAHEATEQHREMEARDAADSVMIEIGPVEKFLNEILSEKPMRFTSEQLAACTGNYSSELGSGGFGVVYRGELPKGLQVAVKVLKVSMNKKVQEAFMAEIGTIGRTYHVHLVRLYGFCFDADTKALVYEFLENGSLEKYLYGGGGEDRGKKLEWRTLHDIAVGTAKGIRYLHEECQQRIVHYDIKPANILLTADFTPKVADFGLARLGERENTHMSLTGGRGTPGYAAPELWMALPATEKCDVYSFGMVLFEVLGRRRNYDLAAQAESQEWFPKWVWDRYEQGDMECVVSAAGIGEEDRAKAEMMCKVALWCVQFQPSARPKMSSVVRMLEGEMAIVPPVNPFHYVMSGGSGSSTLTSSSTNLSSGGTTTGSSEVAVSLPAKKSTDVMVE

Function G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [UniProtKB/Swiss-Prot:Q8RWZ5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os04g56110 LOC_Os04g56110.1 Chr04 33418505 33421204 + MSU_osa1r7
CDS seq

ATGTCTACTGCTGTTGCCATAATATCGTCAGTCTCGGCAACCGCGGCTGCAGTAGTGATGCTCGCTCTGATCAAGCGATGCCGCCGCTACAGGAGGAAGATGAAGAAGAAGATGCTAGCTAGGATCGCCCACGAGGCGACCGAACAGCACCGCGAGATGGAAGCCCGCGACGCGGCGGACAGCGTGATGATCGAGATCGGCCCCGTGGAGAAGTTCCTCAACGAGATCCTCAGCGAGAAGCCGATGCGCTTCACCTCCGAGCAGCTGGCGGCGTGCACCGGGAACTACTCGTCGGAGCTCGGCTCCGGCGGGTTCGGCGTGGTCTACAGGGGGGAGCTGCCCAAAGGCCTGCAGGTCGCCGTGAAGGTGCTCAAGGTGTCCATGAACAAGAAGGTCCAGGAGGCGTTCATGGCGGAGATCGGCACCATCGGGAGGACGTACCACGTCCACCTCGTCAGGCTCTACGGCTTCTGCTTCGACGCCGACACCAAGGCGCTGGTCTACGAGTTCTTGGAGAACGGCTCGCTGGAGAAGTACCTCTACGGCGGCGGCGGCGAGGACAGGGGGAAGAAGCTGGAGTGGCGGACGCTGCACGACATCGCCGTCGGCACGGCGAAGGGGATCAGGTACCTCCACGAGGAGTGCCAGCAGCGGATCGTGCACTACGACATCAAGCCGGCGAATATCCTCCTCACCGCCGACTTCACCCCGAAGGTTGCCGACTTCGGGCTGGCGAGGCTGGGCGAGCGGGAGAACACGCACATGTCGCTGACGGGCGGGCGCGGCACGCCCGGGTACGCGGCGCCGGAGCTGTGGATGGCGCTACCGGCGACGGAGAAGTGCGACGTGTACAGCTTCGGGATGGTGCTGTTCGAGGTGCTGGGGCGGCGGCGGAACTACGACCTCGCCGCGCAGGCGGAGAGCCAGGAGTGGTTCCCCAAGTGGGTGTGGGACAGGTACGAGCAGGGGGACATGGAGTGCGTCGTGTCCGCCGCCGGCATCGGGGAAGAGGACAGGGCGAAGGCGGAGATGATGTGCAAGGTGGCGCTGTGGTGCGTGCAGTTCCAGCCGTCGGCGCGGCCGAAGATGAGCAGCGTGGTGCGGATGCTGGAGGGGGAGATGGCCATCGTCCCGCCGGTGAACCCCTTCCACTACGTCATGAGCGGCGGCAGCGGCAGCTCGACGCTGACGAGCAGCAGCACGAACCTGAGCAGCGGGGGCACCACTACAGGAAGCAGCGAGGTGGCGGTCAGCCTTCCTGCCAAAAAGTCCACGGACGTCATGGTTGAATAG

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Protein seq

MSTAVAIISSVSATAAAVVMLALIKRCRRYRRKMKKKMLARIAHEATEQHREMEARDAADSVMIEIGPVEKFLNEILSEKPMRFTSEQLAACTGNYSSELGSGGFGVVYRGELPKGLQVAVKVLKVSMNKKVQEAFMAEIGTIGRTYHVHLVRLYGFCFDADTKALVYEFLENGSLEKYLYGGGGEDRGKKLEWRTLHDIAVGTAKGIRYLHEECQQRIVHYDIKPANILLTADFTPKVADFGLARLGERENTHMSLTGGRGTPGYAAPELWMALPATEKCDVYSFGMVLFEVLGRRRNYDLAAQAESQEWFPKWVWDRYEQGDMECVVSAAGIGEEDRAKAEMMCKVALWCVQFQPSARPKMSSVVRMLEGEMAIVPPVNPFHYVMSGGSGSSTLTSSSTNLSSGGTTTGSSEVAVSLPAKKSTDVMVE

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Gene Transcript Chromosome Start End Strand Source
LOC_Os04g56110 LOC_Os04g56110.2 Chr04 33418637 33421204 + MSU_osa1r7
CDS seq

ATGCTCGCTCTGATCAAGCGATGCCGCCGCTACAGGAGGAAGATGAAGAAGAAGATGCTAGCTAGGATCGCCCACGAGGCGACCGAACAGCACCGCGAGATGGAAGCCCGCGACGCGGCGGACAGCGTGATGATCGAGATCGGCCCCGTGGAGAAGTTCCTCAACGAGATCCTCAGCGAGAAGCCGATGCGCTTCACCTCCGAGCAGCTGGCGGCGTGCACCGGGAACTACTCGTCGGAGCTCGGCTCCGGCGGGTTCGGCGTGGTCTACAGGGGGGAGCTGCCCAAAGGCCTGCAGGTCGCCGTGAAGGTGCTCAAGGTGTCCATGAACAAGAAGGTCCAGGAGGCGTTCATGGCGGAGATCGGCACCATCGGGAGGACGTACCACGTCCACCTCGTCAGGCTCTACGGCTTCTGCTTCGACGCCGACACCAAGGCGCTGGTCTACGAGTTCTTGGAGAACGGCTCGCTGGAGAAGTACCTCTACGGCGGCGGCGGCGAGGACAGGGGGAAGAAGCTGGAGTGGCGGACGCTGCACGACATCGCCGTCGGCACGGCGAAGGGGATCAGGTACCTCCACGAGGAGTGCCAGCAGCGGATCGTGCACTACGACATCAAGCCGGCGAATATCCTCCTCACCGCCGACTTCACCCCGAAGGTTGCCGACTTCGGGCTGGCGAGGCTGGGCGAGCGGGAGAACACGCACATGTCGCTGACGGGCGGGCGCGGCACGCCCGGGTACGCGGCGCCGGAGCTGTGGATGGCGCTACCGGCGACGGAGAAGTGCGACGTGTACAGCTTCGGGATGGTGCTGTTCGAGGTGCTGGGGCGGCGGCGGAACTACGACCTCGCCGCGCAGGCGGAGAGCCAGGAGTGGTTCCCCAAGTGGGTGTGGGACAGGTACGAGCAGGGGGACATGGAGTGCGTCGTGTCCGCCGCCGGCATCGGGGAAGAGGACAGGGCGAAGGCGGAGATGATGTGCAAGGTGGCGCTGTGGTGCGTGCAGTTCCAGCCGTCGGCGCGGCCGAAGATGAGCAGCGTGGTGCGGATGCTGGAGGGGGAGATGGCCATCGTCCCGCCGGTGAACCCCTTCCACTACGTCATGAGCGGCGGCAGCGGCAGCTCGACGCTGACGAGCAGCAGCACGAACCTGAGCAGCGGGGGCACCACTACAGGAAGCAGCGAGGTGGCGGTCAGCCTTCCTGCCAAAAAGTCCACGGACGTCATGGTTGAATAG

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Protein seq

MLALIKRCRRYRRKMKKKMLARIAHEATEQHREMEARDAADSVMIEIGPVEKFLNEILSEKPMRFTSEQLAACTGNYSSELGSGGFGVVYRGELPKGLQVAVKVLKVSMNKKVQEAFMAEIGTIGRTYHVHLVRLYGFCFDADTKALVYEFLENGSLEKYLYGGGGEDRGKKLEWRTLHDIAVGTAKGIRYLHEECQQRIVHYDIKPANILLTADFTPKVADFGLARLGERENTHMSLTGGRGTPGYAAPELWMALPATEKCDVYSFGMVLFEVLGRRRNYDLAAQAESQEWFPKWVWDRYEQGDMECVVSAAGIGEEDRAKAEMMCKVALWCVQFQPSARPKMSSVVRMLEGEMAIVPPVNPFHYVMSGGSGSSTLTSSSTNLSSGGTTTGSSEVAVSLPAKKSTDVMVE

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Gene Transcript Chromosome Start End Strand Source
LOC_Os04g56110 LOC_Os04g56110.3 Chr04 33418637 33421204 + MSU_osa1r7
CDS seq

ATGCTCGCTCTGATCAAGCGATGCCGCCGCTACAGGAGGAAGATGAAGAAGAAGATGCTAGCTAGGATCGCCCACGAGGCGACCGAACAGCACCGCGAGATGGAAGCCCGCGACGCGGCGGACAGCGTGATGATCGAGATCGGCCCCGTGGAGAAGTTCCTCAACGAGATCCTCAGCGAGAAGCCGATGCGCTTCACCTCCGAGCAGCTGGCGGCGTGCACCGGGAACTACTCGTCGGAGCTCGGCTCCGGCGGGTTCGGCGTGGTCTACAGGGGGGAGCTGCCCAAAGGCCTGCAGGTCGCCGTGAAGGTGCTCAAGGTGTCCATGAACAAGAAGGTCCAGGAGGCGTTCATGGCGGAGATCGGCACCATCGGGAGGACGTACCACGTCCACCTCGTCAGGCTCTACGGCTTCTGCTTCGACGCCGACACCAAGGCGCTGGTCTACGAGTTCTTGGAGAACGGCTCGCTGGAGAAGTACCTCTACGGCGGCGGCGGCGAGGACAGGGGGAAGAAGCTGGAGTGGCGGACGCTGCACGACATCGCCGTCGGCACGGCGAAGGGGATCAGGTACCTCCACGAGGAGTGCCAGCAGCGGATCGTGCACTACGACATCAAGCCGGCGAATATCCTCCTCACCGCCGACTTCACCCCGAAGGTTGCCGACTTCGGGCTGGCGAGGCTGGGCGAGCGGGAGAACACGCACATGTCGCTGACGGGCGGGCGCGGCACGCCCGGGTACGCGGCGCCGGAGCTGTGGATGGCGCTACCGGCGACGGAGAAGTGCGACGTGTACAGCTTCGGGATGGTGCTGTTCGAGGTGCTGGGGCGGCGGCGGAACTACGACCTCGCCGCGCAGGCGGAGAGCCAGGAGTGGTTCCCCAAGTGGGTGTGGGACAGGTACGAGCAGGGGGACATGGAGTGCGTCGTGTCCGCCGCCGGCATCGGGGAAGAGGACAGGGCGAAGGCGGAGATGATGTGCAAGGTGGCGCTGTGGTGCGTGCAGTTCCAGCCGTCGGCGCGGCCGAAGATGAGCAGCGTGGTGCGGATGCTGGAGGGGGAGATGGCCATCGTCCCGCCGGTGAACCCCTTCCACTACGTCATGAGCGGCGGCAGCGGCAGCTCGACGCTGACGAGCAGCAGCACGAACCTGAGCAGCGGGGGCACCACTACAGGAAGCAGCGAGGTGGCGGTCAGCCTTCCTGCCAAAAAGTCCACGGACGTCATGGTTGAATAG

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Protein seq

MLALIKRCRRYRRKMKKKMLARIAHEATEQHREMEARDAADSVMIEIGPVEKFLNEILSEKPMRFTSEQLAACTGNYSSELGSGGFGVVYRGELPKGLQVAVKVLKVSMNKKVQEAFMAEIGTIGRTYHVHLVRLYGFCFDADTKALVYEFLENGSLEKYLYGGGGEDRGKKLEWRTLHDIAVGTAKGIRYLHEECQQRIVHYDIKPANILLTADFTPKVADFGLARLGERENTHMSLTGGRGTPGYAAPELWMALPATEKCDVYSFGMVLFEVLGRRRNYDLAAQAESQEWFPKWVWDRYEQGDMECVVSAAGIGEEDRAKAEMMCKVALWCVQFQPSARPKMSSVVRMLEGEMAIVPPVNPFHYVMSGGSGSSTLTSSSTNLSSGGTTTGSSEVAVSLPAKKSTDVMVE

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 3.534430 4.563599 0.236886

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0655300 RBH 4.083977 5.241428 0.922028
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g56130 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os04g0655300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0029350 RBH 1.083042 1.606309 2.107772
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0030110 RBH 0.345251 1.153761 1.884855
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0029680 RBH 4.061913 0.0 2.930315
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0029500 RBH 0.230907 0.021210 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0029770 RBH 3.800956 5.760393 5.483705
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0526600 RBH 2.002889 8.790124 1.112468
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0028400 RBH 0.442425 0.084039 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0531100 RBH 2.8222305 20.164916 0.0344115
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0028850 RBH 0.282013 0.110683 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0028690 RBH 0.491797 8.151151 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0028800 RBH 0.000000 15.742463 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0029380 RBH 0.502485 0.669354 0.432461
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0029360 RBH 0.304576 0.798312 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G028820 RBH 1.313726 0.468119 1.302987
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0028600 RBH 1.734027 10.413932 2.879002
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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