Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_04g0000710 | OGI:04002230 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:1026359-1027078 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTGCCGATCCTTGAGCATCCCAATGGGAGTACAGATGGTTACGTTGCCAGCATGAGTGGCTTTCTCCTGGATTGGGCGGGGGCATCAGGTGATTGCCCCAAATGCGTAGCAAGCGGAGGGCAATGCACATATGGCGACGGCCTGCGATTCGCCTGCAATTGCACCGACGGGCTGCACCCTGAGAAGTGTGGTGAGTTTGTGAAATCAAAATATCACGGTAAACTTACCCAGTCGATTTGTATTAAATAGAGTTTCCTGAACATGCTGCGCAGACCCTACTAACGGATTCAATGCATCCAAAGTGCCCATCTTGTAGATAGCTTTTTTTTAAAAAAATGAACGAGGCATCATTCTGTCATATAAGAATATTTCCATGCTAATCTGCGGCTTAATGTCCACTAGATAAACTGCTATAATATTGCACGTGACGTAGAGTTGGCTATCAAGAAAAGAAACTAAACCCCGCCATGGTCATAGCAGTGTTCGGAACAGAGTGGATATTGATATTGTGTTTTGAATTATGAGTCTTTGCTTCAAGTTCCTGTGGTTTTTTGTTGTTAGTTCCTCAAACAATTATTTCACTGATGGAGACATTGGCATCTTATGTACTCCTAGTCAAACGTGTAACGTGTAGTTAGAAGCATTCAACTACACTGTCTGATAAAGATGCCATACCAATACCCTGTTCCTGTTTTTGTCCTGCTGATTGCAGACTGA
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| CDS seq | ATGGTGCCGATCCTTGAGCATCCCAATGGGAGTACAGATGGTTACGTTGCCAGCATGAGTGGCTTTCTCCTGGATTGGGCGGGGGCATCAGGTGATTGCCCCAAATGCGTAGCAAGCGGAGGGCAATGCACATATGGCGACGGCCTGCGATTCGCCTGCAATTGCACCGACGGGCTGCACCCTGAGAAGTGTGGTGAGTTTGTGAAATCAAAATATCACGACTGA |
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| Protein seq | MVPILEHPNGSTDGYVASMSGFLLDWAGASGDCPKCVASGGQCTYGDGLRFACNCTDGLHPEKCGEFVKSKYHD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0000710 | OsARC_04g0000710.01 | Chr04 | 1026359 | 1027078 | + | NAM | ||
| CDS seq | ATGGTGCCGATCCTTGAGCATCCCAATGGGAGTACAGATGGTTACGTTGCCAGCATGAGTGGCTTTCTCCTGGATTGGGCGGGGGCATCAGGTGATTGCCCCAAATGCGTAGCAAGCGGAGGGCAATGCACATATGGCGACGGCCTGCGATTCGCCTGCAATTGCACCGACGGGCTGCACCCTGAGAAGTGTGGTGAGTTTGTGAAATCAAAATATCACGACTGA
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| Protein seq | MVPILEHPNGSTDGYVASMSGFLLDWAGASGDCPKCVASGGQCTYGDGLRFACNCTDGLHPEKCGEFVKSKYHD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002540 | SBH | 0.038586 | 0.000000 | 0.469836 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000630 | SBH | 0.247235 | 0.000000 | 3.729095 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000620 | RBH | 2.477253 | 2.460262 | 4.295597 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0034000 | SBH | 0.461777 | 1.019504 | 0.7308405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000640 | RBH | 0.077147 | 0.000000 | 0.290258 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0034100 | SBH | 0.563174 | 1.5713285 | 3.413489 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000630 | RBH | 0.060172 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000640 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000610 | RBH | 0.000000 | 0.167635 | 0.390676 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000620 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000660 | RBH | 0.127111 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
