Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_03g0041990 | OGI:03099680 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:37654611-37659778 | ||||||||
| Gene Symbol | CDKF;3, CDKF;3, Orysa;CDKF;3 | ||||||||||
| DNA seq | CTCCCGGTTTCCCTCGTAAATCCGGAAACCGAGCGGGGGTAGGATGGTCAATTCACCGCGCCGTCCGACTTCCCCACCGTGGCGTGGGATATAATCTTCTCGTATCGTCTCGTCCCTCTTCCGTTTTTTTCCCCAATTTCTCGTCTCCCCCCTTCCTCCAATATATCGGCGGCGATCCCGGCTCGAGGAGAGGAGGCTCCGCCGCGATTTTTTCGGTGTCGCATCGAAATTATGGTGAGTTGGTTTCCTCCCTCCCCCTAATTCCCGATCCGCAATTCGATTGCGATCTCCATTGCTTGGGTTCTGCCTTTTTTGGGGGAATATTTTGGGCGATATCGGCGAATATATGCTGGGCTCTCGCGCGATTCCTTTTTGATTATGGTGGTTGGTGTTCGGTGCGTTTTGGTTGAGGAATTTTGGCTCTAATTCGGTGCCATTAGGTGGGTTTGTGTTTAATTTGGGGATGTTTCTGAATTGTTTCCGTGCGTTTCAGATTGGGGAATGCTGTGTTTCGCCGAGATTTTCTCATCTTCCATATGTGATATCAGATTATAATTGTATGTGTTTTTGTTTCGCTGCAAATTAATTATATTGATGCGAAGTTTCTCTGCATTTGATTGCAGATTTTCGATGCATTTTAGGCTAAAAGTGCTCGGGTCTGAAACCTACGTGCTTTTCTTGTCGCCGAAGATGGTGTCAGCAAATATACATCGACGCACATGAACAGCGATGATGCGTTGCTGAATCCGTCTGAAGCTGCAATAAGCATGACGGTTTTGCAAATTATGATACTAAACCATTCATGCTGCTACGCCCTCGTCTGGAACTTTCTTCTTCTGATGCAACCGTGCACAAGCAAACCTAGCCTCGAAGCGATTGTGATGAGTTTTAGAGGTGGTGCGGGTTCGATCACGTGGAGTTCTATTGGTGTTCAGTGACTCTTGGCAAAAGTTCTCTTGTAAAATCGACGACGATGGAAAGGTCAGCAGTAATTATCTCGCGAATCATATTATTTGTTGCGTGCGCACTAATTTCTGACATGGCATCTAATTTCTTCTCAGGTACAAAGTGATAAGGGAGATAGGCGATGGCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTGTAAGTGCAGCTCTTGGCATAGTACATATGGTTACTTGGATCTTTTCATGTTAATTCAGTTGCCTTCTGCTCCTTATATCTACTAACCTATAAAGGAACGAACAGTATTATTTGTTGCACCTAATCACCTATGAATTTCCCACTTGAGGGAAATGCTAGCAATAATCATCTTCTACATCACCCCAGATGGCTACCTATTCGAGCTTGCACCTTGTTTGTTGGCTTATTATGTTAACATTTCCCCGAATACTGTGCAGGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATTAGTCTGCGAGAGGTGAAGGTAATATATCTCATGTGTTATCAAATGAATACAAATTTGTTTTCAAATCTGTGTGCTTAAAAGGAGAACCATCCTTCTGCAGGCACTTCAAAAACTGAATCATCCCAACATTGTGAAGTTAAAGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGGTTGGTCTCAAGTCATTCTTGGCATACTTTTTTACTACTTTCTTTATGAGCAGGAAAAAAAAGAGGAAAGGCTAAACTATTACTAGCCCATATCGCTATGATCTTCTAGAGTTTTGTGGCCAGTTCCATTAAAAATACTGGCATGAATATTCTATCGTCTACAAATTACGTGTATATCTTGCGGTTCTAATGATTATAGTTCTATAGTTTGTATGCCTGTTGCATTTGTTGTGACATTACATTACGTGTATATCTGCTGAATCTTTTGGTTCACACTTCTCTCACCTGGAGCTGTTAAATATTTAGCTTTTCACTTACTCTGGTATCATTGTTTCTTTTCACAGGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAGAGGAGATACGGAACTTTATGGTGCAGATACTGCAAGGTCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGGTATACCTTTCGACTATATTCTGTTGAAGTTATAGGCTGTCTATATACCCTAGAAGTTAATTAGCCTTCTCTCTTTCCTCTTTAGAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGCAAGAGAAGTATCTTCCAGTCCTCCTTATACTGACTATGTTTCCACCAGATGGTGAGTTTGTGTTTCAAATTTATCTCTGTATAACCAGTGAATATGTATACACCACTTTATCCAAATTATTGTGAAATGGTGAAGGTATCGAGCTCCAGAGGTGCTGCTACAATCGTCAGCTTACACACCTGCTATTGGTGATGCCTATTATCCCAGCCCCTGCATTTTACTACTTCCATTTTTATTAATGCCAGCTCAACATGAAATTTGAGTTTGTGCATATAAAACTCGCATTGCATGAAACTACTGAATTATATAACTGATAGATGTGCACTTCCTCAGATATGTGGGCTGTTGGTGCAATTTTGGCTGAGCTTTTCACACTGTCTCCACTTTTCCCTGGTGGAAGGTATGTATGATACTGTTGTTTGGGTACCATGATTATGTTGCCTCTGTAGTTGGTAATATCCATAATTTACTGTATTCATGTATTGATGCATATATGCTGTCTGCTTACGCATGTTTTGATTTGAGCAGTCAACAGATCACCCTTTTGATTTCTGTTGAAGTGAACTCTTGTTTCTTCTTTTGGTGATTAGTTGTGTTCTTTTTATTTTGTGGATAGTTGGCCTGGGAATTTTGGGGATTTCATGCCACTATCTCTGAGTTGCATTTATTAATTCCAAGGCTGTAAAATTATTGTTGTTCTGAATACTGTAACAACAATATTTTTTCCCTCATGTTAGTATTTGTAGCTCTTATGATGCCTATGTTGTTTTCTTATACGATTAAGCCTATACTTCTCCATACTTTTTCTTAAGCCCAGTTCATCTTGCACAGAGTAGACCTAGACCATTTGTACTTATATTTCCTTGTTTATGGTGATTCTGCTTTGCTTTTAATTATTTTATTTGCTTACAGCGAGACTGATCAGCTATACAAAATATGTGCTGTGCTTGGGACACCGGATCATACTGTCTGGCCAGAGGGAATGAACCTGCCTCGTTCAAGCAGCTTTAATTTTTTCCAGGTGAAATTACTTCTGTCTACAACCATTAGGATAAGTTGCCTTTGACACTGATTTCCTTTTCTTTTGCTTGTTCAAAAGATCCCACCAAGAAATCTATGGGAGCTTATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAGGTTAGTTATGACACATGAGTCTTGTTTCTTACATGTTTGATTTATATATTGTTATATGAACCCCATGTTTTTTTGTCCAGTTGCTTATGTAAGTACTAACATCAAGTTAATTAATATAACATCTTACTTATATATTATATTGTTTTAAGTAATTTACCATGACAATTCACAATAAATTGCACTAATTACTAGTTTGTAAATAGTGTAAGGTATGGGTTTGTAACATGTTGATGATATAGCTTTTGTTGCTTGATGTTATTTGTCTGAGAATAATGCTCTATATTAACATGGTAGTATTTGTCATTCTGACAGCAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAATGTACTAATTTACACATTGAGTTATTCATGGGAACTATACTTCGCTTTTCTTTATGTACCTAAGACTTTTGAGTTGTCTAGGTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAGTGAGTTTCTCCCCTTTTTCTTTCAGGAAATGATAATTTATGTATTCTGTTTTGGTGATTTGTTGTTGTTTCTCCTATTGAACTCCTTTTATTTTTGTAGGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTGAGGACAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGGTGCCTAACATAATTTTTCCTTTGAAATTCCTTCCGGTTATTATCTTTTGTTTTATTGGCTTATATTTCCTTTTCTGCTTGTAGATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGGTGAGATTTTATTTGCATGACGTGGGAACATATATTTGCATGAGAGTGGAATGGGTGTTATCCTGAAGTTTGCTATCATATCATGCAGGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGGTCCGTTCTTTGTCTCTCTGCCCTCCTCCATTTTTGACTTATAGTTCAGGACTGTATTTGCTTGCTTTTTTGCGCCAACAGCCAGATGGTTATAGATTTAATTGAGATGCGTGGTGCTCAAACATGGCTTCCTTTTTACATTATTTAGCAGGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCATGTCATCCTGGCCACAGGCATATGTGGTTGACGGGTAAGCATCAGCATGTCCTTTACGAATGAGTTAATCTCCCAAAGCCAGACTTTTATATCCGCTAAGTGCTATCATTATTCTGTACTTCAGCCAAGCCACACTTCCAGCTGTTGGATTCTCTGGTTCTCCATTCGGTTTGTCCCCCTTACAACCAAATCTGTTTGAGAACCGTTCGTTCGCAACACCCATCCGGCAGGTCAATTTCTTCTGAGGGGATACAATTAACAGATTGAGCACTGAAACTATTTTTCAGTCCATACATTCAACTTGTTCCTTTATACATTGAACTCAAATAAACGGGGGCGGCAGATGAAATGTATATAATCGTAGCTTGTTTCCTTTTTCTTTTCTCCCCATCTAAATTCCCCTCACGGAGTACCCTATAATGTCAGATTCTATATTTATCTAGATTGTGAATATGTGACTTTCCAAAACAGTTTTGTACGTCGATTTGTCAAATGATAACAGCAAGTATGGATGAGCGATAACTGACGATTTGTGAAGCTGTTTTTGTATGAGATGATTCCTGTGC
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| CDS seq | ATGGAAAGGTACAAAGTGATAAGGGAGATAGGCGATGGCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATTAGTCTGCGAGAGGTGAAGGCACTTCAAAAACTGAATCATCCCAACATTGTGAAGTTAAAGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAGAGGAGATACGGAACTTTATGGTGCAGATACTGCAAGGTCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGCAAGAGAAGTATCTTCCAGTCCTCCTTATACTGACTATGTTTCCACCAGATGGTATCGAGCTCCAGAGGTGCTGCTACAATCGTCAGCTTACACACCTGCTATTGATATGTGGGCTGTTGGTGCAATTTTGGCTGAGCTTTTCACACTGTCTCCACTTTTCCCTGGTGGAAGCGAGACTGATCAGCTATACAAAATATGTGCTGTGCTTGGGACACCGGATCATACTGTCTGGCCAGAGGGAATGAACCTGCCTCGTTCAAGCAGCTTTAATTTTTTCCAGATCCCACCAAGAAATCTATGGGAGCTTATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAGCAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAATGTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTGAGGACAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGCAGGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCATGTCATCCTGGCCACAGGCATATGTGGTTGACGGCCAAGCCACACTTCCAGCTGTTGGATTCTCTGGTTCTCCATTCGGTTTGTCCCCCTTACAACCAAATCTGTTTGAGAACCGTTCGTTCGCAACACCCATCCGGCAGGTCAATTTCTTCTGA
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| Protein seq | MERYKVIREIGDGTCGNVFRAYNTETNEIVAVKKMKRKFFQWEECISLREVKALQKLNHPNIVKLKEVTMENHELFFIFENMECNLYDVIRERQAAFSEEEIRNFMVQILQGLAYMHNNGYFHRDLKPENLLVTDGTVKIADFGLAREVSSSPPYTDYVSTRWYRAPEVLLQSSAYTPAIDMWAVGAILAELFTLSPLFPGGSETDQLYKICAVLGTPDHTVWPEGMNLPRSSSFNFFQIPPRNLWELIPNATLEAIDLIQQLCSWDPRRRPTAEQSLQHPFFNVGNWVPRPLHASHTKTIETRPNPRLELNLWDFGTEPEDNYLDLTLSLKPSFPGTDFSNNVPEHTKEEILLYPGFENPPVQSAGFWPLVASDRPMGDVPAMSSWPQAYVVDGQATLPAVGFSGSPFGLSPLQPNLFENRSFATPIRQVNFF |
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| Function | Cyclin-dependent kinase F-3 [UniProtKB/Swiss-Prot:Q84SN3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0041990 | OsARC_03g0041990.04 | Chr03 | 37655878 | 37659778 | + | NAM | ||
| CDS seq | ATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAGAGGAGATACGGAACTTTATGGTGCAGATACTGCAAGGTCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGCAAGAGAAGTATCTTCCAGTCCTCCTTATACTGACTATGTTTCCACCAGATGGTATCGAGCTCCAGAGGTGCTGCTACAATCGTCAGCTTACACACCTGCTATTGATATGTGGGCTGTTGGTGCAATTTTGGCTGAGCTTTTCACACTGTCTCCACTTTTCCCTGGTGGAAGCGAGACTGATCAGCTATACAAAATATGTGCTGTGCTTGGGACACCGGATCATACTGTCTGGCCAGAGGGAATGAACCTGCCTCGTTCAAGCAGCTTTAATTTTTTCCAGATCCCACCAAGAAATCTATGGGAGCTTATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAGCAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAATGTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTGAGGACAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCATGTCATCCTGGCCACAGGCATATGTGGTTGACGGCCAAGCCACACTTCCAGCTGTTGGATTCTCTGGTTCTCCATTCGGTTTGTCCCCCTTACAACCAAATCTGTTTGAGAACCGTTCGTTCGCAACACCCATCCGGCAGGTCAATTTCTTCTGA
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| Protein seq | MENHELFFIFENMECNLYDVIRERQAAFSEEEIRNFMVQILQGLAYMHNNGYFHRDLKPENLLVTDGTVKIADFGLAREVSSSPPYTDYVSTRWYRAPEVLLQSSAYTPAIDMWAVGAILAELFTLSPLFPGGSETDQLYKICAVLGTPDHTVWPEGMNLPRSSSFNFFQIPPRNLWELIPNATLEAIDLIQQLCSWDPRRRPTAEQSLQHPFFNVGNWVPRPLHASHTKTIETRPNPRLELNLWDFGTEPEDNYLDLTLSLKPSFPGTDFSNNVPEHTKEEILLYPGFENPPVQSGFWPLVASDRPMGDVPAMSSWPQAYVVDGQATLPAVGFSGSPFGLSPLQPNLFENRSFATPIRQVNFF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0041990 | OsARC_03g0041990.03 | Chr03 | 37654870 | 37659778 | + | NAM | ||
| CDS seq | ATGGAAAGGTACAAAGTGATAAGGGAGATAGGCGATGGCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATTAGTCTGCGAGAGGTGAAGGCACTTCAAAAACTGAATCATCCCAACATTGTGAAGTTAAAGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAGAGGAGATACGGAACTTTATGGTGCAGATACTGCAAGGTCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGCAAGAGAAGTATCTTCCAGTCCTCCTTATACTGACTATGTTTCCACCAGATGGTATCGAGCTCCAGAGGTGCTGCTACAATCGTCAGCTTACACACCTGCTATTGATATGTGGGCTGTTGGTGCAATTTTGGCTGAGCTTTTCACACTGTCTCCACTTTTCCCTGGTGGAAGCGAGACTGATCAGCTATACAAAATATGTGCTGTGCTTGGGACACCGGATCATACTGTCTGGCCAGAGGGAATGAACCTGCCTCGTTCAAGCAGCTTTAATTTTTTCCAGATCCCACCAAGAAATCTATGGGAGCTTATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAGCAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAATGTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTGAGGACAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCATGTCATCCTGGCCACAGGCATATGTGGTTGACGGCCAAGCCACACTTCCAGCTGTTGGATTCTCTGGTTCTCCATTCGGTTTGTCCCCCTTACAACCAAATCTGTTTGAGAACCGTTCGTTCGCAACACCCATCCGGCAGGTCAATTTCTTCTGA
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| Protein seq | MERYKVIREIGDGTCGNVFRAYNTETNEIVAVKKMKRKFFQWEECISLREVKALQKLNHPNIVKLKEVTMENHELFFIFENMECNLYDVIRERQAAFSEEEIRNFMVQILQGLAYMHNNGYFHRDLKPENLLVTDGTVKIADFGLAREVSSSPPYTDYVSTRWYRAPEVLLQSSAYTPAIDMWAVGAILAELFTLSPLFPGGSETDQLYKICAVLGTPDHTVWPEGMNLPRSSSFNFFQIPPRNLWELIPNATLEAIDLIQQLCSWDPRRRPTAEQSLQHPFFNVGNWVPRPLHASHTKTIETRPNPRLELNLWDFGTEPEDNYLDLTLSLKPSFPGTDFSNNVPEHTKEEILLYPGFENPPVQSGFWPLVASDRPMGDVPAMSSWPQAYVVDGQATLPAVGFSGSPFGLSPLQPNLFENRSFATPIRQVNFF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0041990 | OsARC_03g0041990.02 | Chr03 | 37654611 | 37659778 | + | NAM | ||
| CDS seq | ATGGAAAGGTACAAAGTGATAAGGGAGATAGGCGATGGCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATTAGTCTGCGAGAGGTGAAGGCACTTCAAAAACTGAATCATCCCAACATTGTGAAGTTAAAGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAGAGGAGATACGGAACTTTATGGTGCAGATACTGCAAGGTCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGCAAGAGAAGTATCTTCCAGTCCTCCTTATACTGACTATGTTTCCACCAGATGGTATCGAGCTCCAGAGGTGCTGCTACAATCGTCAGCTTACACACCTGCTATTGATATGTGGGCTGTTGGTGCAATTTTGGCTGAGCTTTTCACACTGTCTCCACTTTTCCCTGGTGGAAGCGAGACTGATCAGCTATACAAAATATGTGCTGTGCTTGGGACACCGGATCATACTGTCTGGCCAGAGGGAATGAACCTGCCTCGTTCAAGCAGCTTTAATTTTTTCCAGATCCCACCAAGAAATCTATGGGAGCTTATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAGCAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAATGTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTGAGGACAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCATGTCATCCTGGCCACAGGCATATGTGGTTGACGGCCAAGCCACACTTCCAGCTGTTGGATTCTCTGGTTCTCCATTCGGTTTGTCCCCCTTACAACCAAATCTGTTTGAGAACCGTTCGTTCGCAACACCCATCCGGCAGGTCAATTTCTTCTGA
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| Protein seq | MERYKVIREIGDGTCGNVFRAYNTETNEIVAVKKMKRKFFQWEECISLREVKALQKLNHPNIVKLKEVTMENHELFFIFENMECNLYDVIRERQAAFSEEEIRNFMVQILQGLAYMHNNGYFHRDLKPENLLVTDGTVKIADFGLAREVSSSPPYTDYVSTRWYRAPEVLLQSSAYTPAIDMWAVGAILAELFTLSPLFPGGSETDQLYKICAVLGTPDHTVWPEGMNLPRSSSFNFFQIPPRNLWELIPNATLEAIDLIQQLCSWDPRRRPTAEQSLQHPFFNVGNWVPRPLHASHTKTIETRPNPRLELNLWDFGTEPEDNYLDLTLSLKPSFPGTDFSNNVPEHTKEEILLYPGFENPPVQSGFWPLVASDRPMGDVPAMSSWPQAYVVDGQATLPAVGFSGSPFGLSPLQPNLFENRSFATPIRQVNFF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0041990 | OsARC_03g0041990.01 | Chr03 | 37654611 | 37659778 | + | NAM | ||
| CDS seq | ATGGAAAGGTACAAAGTGATAAGGGAGATAGGCGATGGCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTGTTGCAGTTAAAAAAATGAAGAGGAAGTTTTTCCAATGGGAAGAGTGCATTAGTCTGCGAGAGGTGAAGGCACTTCAAAAACTGAATCATCCCAACATTGTGAAGTTAAAGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAGAGGAGATACGGAACTTTATGGTGCAGATACTGCAAGGTCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGCAAGAGAAGTATCTTCCAGTCCTCCTTATACTGACTATGTTTCCACCAGATGGTATCGAGCTCCAGAGGTGCTGCTACAATCGTCAGCTTACACACCTGCTATTGATATGTGGGCTGTTGGTGCAATTTTGGCTGAGCTTTTCACACTGTCTCCACTTTTCCCTGGTGGAAGCGAGACTGATCAGCTATACAAAATATGTGCTGTGCTTGGGACACCGGATCATACTGTCTGGCCAGAGGGAATGAACCTGCCTCGTTCAAGCAGCTTTAATTTTTTCCAGATCCCACCAAGAAATCTATGGGAGCTTATTCCTAATGCTACTTTGGAAGCTATCGACTTGATTCAGCAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAATGTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTGAAACTAGACCGAATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTGAGGACAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAGCAGGGTTTTGGCCTCTCGTTGCATCAGACCGGCCAATGGGCGATGTTCCAGCCATGTCATCCTGGCCACAGGCATATGTGGTTGACGGCCAAGCCACACTTCCAGCTGTTGGATTCTCTGGTTCTCCATTCGGTTTGTCCCCCTTACAACCAAATCTGTTTGAGAACCGTTCGTTCGCAACACCCATCCGGCAGGTCAATTTCTTCTGA
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| Protein seq | MERYKVIREIGDGTCGNVFRAYNTETNEIVAVKKMKRKFFQWEECISLREVKALQKLNHPNIVKLKEVTMENHELFFIFENMECNLYDVIRERQAAFSEEEIRNFMVQILQGLAYMHNNGYFHRDLKPENLLVTDGTVKIADFGLAREVSSSPPYTDYVSTRWYRAPEVLLQSSAYTPAIDMWAVGAILAELFTLSPLFPGGSETDQLYKICAVLGTPDHTVWPEGMNLPRSSSFNFFQIPPRNLWELIPNATLEAIDLIQQLCSWDPRRRPTAEQSLQHPFFNVGNWVPRPLHASHTKTIETRPNPRLELNLWDFGTEPEDNYLDLTLSLKPSFPGTDFSNNVPEHTKEEILLYPGFENPPVQSAGFWPLVASDRPMGDVPAMSSWPQAYVVDGQATLPAVGFSGSPFGLSPLQPNLFENRSFATPIRQVNFF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 37659010 | 37659162 | + | OsARC_03g0041990.01 | OsARC_03g0041990.04,OsARC_03g0041990.03,OsARC_03g0041990.01,OsARC_03g0041990.02 | All |
| AF | Chr03 | 37654611 | 37655234 | + | OsARC_03g0041990.01,OsARC_03g0041990.02 | OsARC_03g0041990.03,OsARC_03g0041990.01,OsARC_03g0041990.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.561401 | 0.539815 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0847600 | RBH | 2.169305 | 2.881180 | 12.928047 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g63020 | RBH | 1.485531 | 1.653241 | 3.073236 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0847600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0042010 | RBH | 2.643593 | 40.007977 | 19.868130 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0041700 | RBH | 0.844257 | 6.402783 | 8.786367 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0041740 | RBH | 3.529394 | 37.551003 | 27.775454 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0041540 | RBH | 8.086625 | 43.665920 | 44.276772 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0609800 | RBH | 23.8627435 | 45.6050985 | 38.608412 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0041270 | RBH | 0.706436 | 2.781554 | 4.526316 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0611400 | RBH | 28.462725 | 26.6935455 | 38.7211115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0041820 | RBH | 0.761150 | 0.697134 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0041770 | RBH | 1.653927 | 39.243298 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0041460 | RBH | 16.202608 | 70.714546 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0041510 | RBH | 1.672351 | 3.305047 | 4.342748 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0041560 | RBH | 1.444055 | 16.745239 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G041320 | RBH | 1.909800 | 6.766165 | 6.250403 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0041000 | SBH | 5.345015 | 25.712814 | 25.585241 |
