Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_03g0011240 | OGI:08034580 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:8572415-8573581 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAATGAAGCCAATTTCAGAATATAAACAGAAAGTGAGCTTGGAGATAGAGGGGACTAAAGAAAAACACAAGATGAAAGAAAATGCAGGTATCAGATAGAAGCATTAACCAACAAAATAGTCTGAACAAGCATAAAAAAAATCCATACATTTGGTTTTTACAGTGAGTCAGAACCAAAAATACATATGTATATACAGTTGATTTGTAATGTAACTTTGTTTTTCACAGTATTTGTTTCTATATTTTTAATAAAATAGAGAAAGTTACAATGAGAATTTAATAAAATTACACATGTAATTATAGTGTGTGTGACATGTAACAAAACTTTAACTAAATGTAAAAGTACTCTCTAACACTTTGAATTACACATGAATTTTGATGCTATAACTATTTTTTTAATATTTCGTGGGAGCAGGAACTATTTCAAATGCAGAATCAAATAAGAATAGCAACAGTATGACCCAAGGTACAAAAGAAAAAAAAACAAATTTGCTAGATCGTAAAAAATCTGACATGCCAGTACTTACCAATAAATGTGACACTTCTTGCAGGTACAGATATTCATCAACTACAAGATATAAGGGGAAGTTTAAAAGAACCAGAGAAGGACAAAACAGAAACAAAGCATATTCAAGAAAGAAGTTCTACCATCACACAAAATTCAGGTAAAAAAAATAATATTCTTTGACTATATGTATTCTGCACCAAATGAAAAATAATTTTTTAATTACAAATAGCCAATCCTTCATGCATTTTCAATTGACAGGAATAACTGCAACTCAAATACCACAGAGCCCAGCATTGCTACATGATGAGTTAAACATGCTAAACTCTCAAGCAACACCGGTAAAATATAAATAAATAAGCAACATACAAAAAAGACAATTACATCATTTTCTCTGATACTAACAAATTGAAATGCAGGTAGCACAGTTATCATATACAAGTCTCATGCGCCAAGTGATAAACAGTCCACGCATAAACATACAACCTAATATGGTAAGAATATAGAATGACAATATGAATATCATTGTACAACAACAAATGTTTGACTATGAGAAAAAATAAAAATGATGCAGGCAAGCCTAGAAAGTTTCACAAGTCTCCTTCAGACACCCTCGGCCTTTCATGTAAGTATTTTTCTGCATTTAAATTTTTGTAGAGCTAA
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| CDS seq | ATGAAGCCAATTTCAGAATATAAACAGAAAGTGAGCTTGGAGATAGAGGGGACTAAAGAAAAACACAAGATGAAAGAAAATGCAGGAACTATTTCAAATGCAGAATCAAATAAGAATAGCAACAGTATGACCCAAGGTACAGATATTCATCAACTACAAGATATAAGGGGAAGTTTAAAAGAACCAGAGAAGGACAAAACAGAAACAAAGCATATTCAAGAAAGAAGTTCTACCATCACACAAAATTCAGGAATAACTGCAACTCAAATACCACAGAGCCCAGCATTGCTACATGATGAGTTAAACATGCTAAACTCTCAAGCAACACCGGTAGCACAGTTATCATATACAAGTCTCATGCGCCAAGTGATAAACAGTCCACGCATAAACATACAACCTAATATGAGCTAA
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| Protein seq | MKPISEYKQKVSLEIEGTKEKHKMKENAGTISNAESNKNSNSMTQGTDIHQLQDIRGSLKEPEKDKTETKHIQERSSTITQNSGITATQIPQSPALLHDELNMLNSQATPVAQLSYTSLMRQVINSPRINIQPNMS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0011240 | OsARC_03g0011240.01 | Chr03 | 8572415 | 8573581 | + | NAM | ||
| CDS seq | ATGAAGCCAATTTCAGAATATAAACAGAAAGTGAGCTTGGAGATAGAGGGGACTAAAGAAAAACACAAGATGAAAGAAAATGCAGGAACTATTTCAAATGCAGAATCAAATAAGAATAGCAACAGTATGACCCAAGGTACAGATATTCATCAACTACAAGATATAAGGGGAAGTTTAAAAGAACCAGAGAAGGACAAAACAGAAACAAAGCATATTCAAGAAAGAAGTTCTACCATCACACAAAATTCAGGAATAACTGCAACTCAAATACCACAGAGCCCAGCATTGCTACATGATGAGTTAAACATGCTAAACTCTCAAGCAACACCGGTAGCACAGTTATCATATACAAGTCTCATGCGCCAAGTGATAAACAGTCCACGCATAAACATACAACCTAATATGAGCTAA
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| Protein seq | MKPISEYKQKVSLEIEGTKEKHKMKENAGTISNAESNKNSNSMTQGTDIHQLQDIRGSLKEPEKDKTETKHIQERSSTITQNSGITATQIPQSPALLHDELNMLNSQATPVAQLSYTSLMRQVINSPRINIQPNMS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g17750 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0006440 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0016620 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0006180 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0006610 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0006320 | SBH | 0.0 | 0.0 | 8.121476 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0006480 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0037530 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0037540 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0006540 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0059330 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0037220 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G011100 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0013830 | RBH | 0.0 | 0.0 | 0.0 |
