Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_03g0007330 | OGI:03014240 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:5407726-5409068 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CACGACAGAGCGTATACTGGTTTTATCCCAAGGCAGCGCGGCCAGATGGCTTCGTCCACGGTGACATTGGAGAAGACGACCACAATCCGTAGCGAAGCCGTTGTCGCGGCCGATGCGGCCGTGGACAGAGCAGCGACGTTGAAGTCTCCTCTCCTGGAAGGAAAGAAGTGCGGCGACGGTGGCGTTGCGAAGCGGTGCTGCGAGCGCAAGTACGAGCTCGTCAGCTACGACGCGCTCCCGGCCTTCCTCAAGCACAACGAGTTCATCATCGACTACTACCGCAGCGAGTGGCCCATCAAGCAGGCGCTCCTCAGCGCCTTCGCCGTCCACAACGAGACCGTCAACGTCTGGACGTAAGCACTCGATCGATCAGAGCACGTCTGGACCTAAGCACGCGAGATGGAACAGGTTGGGTGCTTTGATTGACAAGCGTTTCTTGCTGTATCTTGGCAGGCATCTGATCGGGTTCTTCATGTTCCTCGCGCTCACCGTGTGCGCCGCCACGATGGTTCCCATGGAATCTTCCGCGACGTCCATGACCATGGCCAACAACACCGGCAACCCAATGGTACTGATGATGATGAGCTACGGCAGCAACGGAGCGGCCATGGCAGTGCAGGCTCTGCGCAACGTGTCCGTCGAATCGGAGCTCGCGGCGGCGGCGTTGTCGGCGGCGGGCGACCAGGTCGCGCGTTGGCCGTTCTACGCGTACCTCTGCGGCGCCATGTTCTGCCTGCTGATGAGCAGCGCGTGCCACCTGCTGGCCTGCCACTCGGAGCACGCCAGCTACGTGCTGCTCCGCCTCGACTACGCCGGCATCACGGGCCTCATCGTCACCTCCTTCTACCCGCTCGTCTACTACACCTTCCTCTGCGACCCGTTCTTCCGCACGCTCTACCTCGGCTTCATCACGCTCTTCGGCGCCGCCGCGGTGGCCGTCTCGCTGATGCCGGTGTTCGAGAAGCCCGAGCTGCGGTGGGCGCGCGCCGGCCTGTTCGCGTGCATGGGCATGTCAGGACTCGTTCCAATCGTGCACAAGATGCTCGTGTTCGGGGCGCGCCCGGAGGCGGTGCTCACCACGGGCTACGAGATGGTCATGGGGGCGTTCTACCTCGCCGGCGTGGTGGTGTACGCCACCAGGGTGCCGGAGCGGTGGATGCCGGGGAAGTTCGACCTCGCCGGCCACAGCCACCAGCTGTTCCACGTGCTCGTCATCGCCGGCGCCTACGCGCACTACCTGGCCGGAGTGGTCTACCTCAGCTGGAGGGACGGGGAAGCTTGCTGAGGCGTTCCAGGATGCTGCGCTGGCATCGTACAAAATTGACTACGTGTACCCTTTGTTG
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| CDS seq | ATGGCTTCGTCCACGGTGACATTGGAGAAGACGACCACAATCCGTAGCGAAGCCGTTGTCGCGGCCGATGCGGCCGTGGACAGAGCAGCGACGTTGAAGTCTCCTCTCCTGGAAGGAAAGAAGTGCGGCGACGGTGGCGTTGCGAAGCGGTGCTGCGAGCGCAAGTACGAGCTCGTCAGCTACGACGCGCTCCCGGCCTTCCTCAAGCACAACGAGTTCATCATCGACTACTACCGCAGCGAGTGGCCCATCAAGCAGGCGCTCCTCAGCGCCTTCGCCGTCCACAACGAGACCGTCAACGTCTGGACGCATCTGATCGGGTTCTTCATGTTCCTCGCGCTCACCGTGTGCGCCGCCACGATGGTTCCCATGGAATCTTCCGCGACGTCCATGACCATGGCCAACAACACCGGCAACCCAATGGTACTGATGATGATGAGCTACGGCAGCAACGGAGCGGCCATGGCAGTGCAGGCTCTGCGCAACGTGTCCGTCGAATCGGAGCTCGCGGCGGCGGCGTTGTCGGCGGCGGGCGACCAGGTCGCGCGTTGGCCGTTCTACGCGTACCTCTGCGGCGCCATGTTCTGCCTGCTGATGAGCAGCGCGTGCCACCTGCTGGCCTGCCACTCGGAGCACGCCAGCTACGTGCTGCTCCGCCTCGACTACGCCGGCATCACGGGCCTCATCGTCACCTCCTTCTACCCGCTCGTCTACTACACCTTCCTCTGCGACCCGTTCTTCCGCACGCTCTACCTCGGCTTCATCACGCTCTTCGGCGCCGCCGCGGTGGCCGTCTCGCTGATGCCGGTGTTCGAGAAGCCCGAGCTGCGGTGGGCGCGCGCCGGCCTGTTCGCGTGCATGGGCATGTCAGGACTCGTTCCAATCGTGCACAAGATGCTCGTGTTCGGGGCGCGCCCGGAGGCGGTGCTCACCACGGGCTACGAGATGGTCATGGGGGCGTTCTACCTCGCCGGCGTGGTGGTGTACGCCACCAGGGTGCCGGAGCGGTGGATGCCGGGGAAGTTCGACCTCGCCGGCCACAGCCACCAGCTGTTCCACGTGCTCGTCATCGCCGGCGCCTACGCGCACTACCTGGCCGGAGTGGTCTACCTCAGCTGGAGGGACGGGGAAGCTTGCTGA
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| Protein seq | MASSTVTLEKTTTIRSEAVVAADAAVDRAATLKSPLLEGKKCGDGGVAKRCCERKYELVSYDALPAFLKHNEFIIDYYRSEWPIKQALLSAFAVHNETVNVWTHLIGFFMFLALTVCAATMVPMESSATSMTMANNTGNPMVLMMMSYGSNGAAMAVQALRNVSVESELAAAALSAAGDQVARWPFYAYLCGAMFCLLMSSACHLLACHSEHASYVLLRLDYAGITGLIVTSFYPLVYYTFLCDPFFRTLYLGFITLFGAAAVAVSLMPVFEKPELRWARAGLFACMGMSGLVPIVHKMLVFGARPEAVLTTGYEMVMGAFYLAGVVVYATRVPERWMPGKFDLAGHSHQLFHVLVIAGAYAHYLAGVVYLSWRDGEAC |
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| Function | Heptahelical transmembrane protein 4 [UniProtKB/Swiss-Prot:Q9SZG0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0007330 | OsARC_03g0007330.01 | Chr03 | 5407726 | 5409068 | + | NAM | ||
| CDS seq | ATGGCTTCGTCCACGGTGACATTGGAGAAGACGACCACAATCCGTAGCGAAGCCGTTGTCGCGGCCGATGCGGCCGTGGACAGAGCAGCGACGTTGAAGTCTCCTCTCCTGGAAGGAAAGAAGTGCGGCGACGGTGGCGTTGCGAAGCGGTGCTGCGAGCGCAAGTACGAGCTCGTCAGCTACGACGCGCTCCCGGCCTTCCTCAAGCACAACGAGTTCATCATCGACTACTACCGCAGCGAGTGGCCCATCAAGCAGGCGCTCCTCAGCGCCTTCGCCGTCCACAACGAGACCGTCAACGTCTGGACGCATCTGATCGGGTTCTTCATGTTCCTCGCGCTCACCGTGTGCGCCGCCACGATGGTTCCCATGGAATCTTCCGCGACGTCCATGACCATGGCCAACAACACCGGCAACCCAATGGTACTGATGATGATGAGCTACGGCAGCAACGGAGCGGCCATGGCAGTGCAGGCTCTGCGCAACGTGTCCGTCGAATCGGAGCTCGCGGCGGCGGCGTTGTCGGCGGCGGGCGACCAGGTCGCGCGTTGGCCGTTCTACGCGTACCTCTGCGGCGCCATGTTCTGCCTGCTGATGAGCAGCGCGTGCCACCTGCTGGCCTGCCACTCGGAGCACGCCAGCTACGTGCTGCTCCGCCTCGACTACGCCGGCATCACGGGCCTCATCGTCACCTCCTTCTACCCGCTCGTCTACTACACCTTCCTCTGCGACCCGTTCTTCCGCACGCTCTACCTCGGCTTCATCACGCTCTTCGGCGCCGCCGCGGTGGCCGTCTCGCTGATGCCGGTGTTCGAGAAGCCCGAGCTGCGGTGGGCGCGCGCCGGCCTGTTCGCGTGCATGGGCATGTCAGGACTCGTTCCAATCGTGCACAAGATGCTCGTGTTCGGGGCGCGCCCGGAGGCGGTGCTCACCACGGGCTACGAGATGGTCATGGGGGCGTTCTACCTCGCCGGCGTGGTGGTGTACGCCACCAGGGTGCCGGAGCGGTGGATGCCGGGGAAGTTCGACCTCGCCGGCCACAGCCACCAGCTGTTCCACGTGCTCGTCATCGCCGGCGCCTACGCGCACTACCTGGCCGGAGTGGTCTACCTCAGCTGGAGGGACGGGGAAGCTTGCTGA
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| Protein seq | MASSTVTLEKTTTIRSEAVVAADAAVDRAATLKSPLLEGKKCGDGGVAKRCCERKYELVSYDALPAFLKHNEFIIDYYRSEWPIKQALLSAFAVHNETVNVWTHLIGFFMFLALTVCAATMVPMESSATSMTMANNTGNPMVLMMMSYGSNGAAMAVQALRNVSVESELAAAALSAAGDQVARWPFYAYLCGAMFCLLMSSACHLLACHSEHASYVLLRLDYAGITGLIVTSFYPLVYYTFLCDPFFRTLYLGFITLFGAAAVAVSLMPVFEKPELRWARAGLFACMGMSGLVPIVHKMLVFGARPEAVLTTGYEMVMGAFYLAGVVVYATRVPERWMPGKFDLAGHSHQLFHVLVIAGAYAHYLAGVVYLSWRDGEAC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0200000 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g10300 | RBH | 0.0 | 0.0 | 0.204604 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0200000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0007320 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0007290 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0007340 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014760 | RBH | 0.0 | 0.027633 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0007210 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0088300 | RBH | 0.025651 | 0.15602 | 0.033004 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0007130 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0088700 | RBH | 0.050451 | 0.3225905 | 0.048066 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0007170 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0007230 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0007210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0007230 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0007200 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G007230 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0007040 | RBH | 0.0 | 0.0 | 0.0 |
