Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_03g0003930 | OGI:03007650 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr03:2924013-2928713 | ||||||||
| Gene Symbol | Orysa;DP3 | ||||||||||
| DNA seq | CGCGTCTCTGCCCGCCCTCTCGTCGATTTCTCATTTCTTTCTCTCCCTCCAATTTGCCCCCTCTTTGTCGTTTTAGGGTTTCCGCGCTCCAACTCCTCCCCAATTCTGGTCCCCGATTCGCGCGATCTCGGCCACCCATGGTCTCCGGCGTCGCCCACCGCCCGGACGACGACGGCGGGCGCGCCGCCTCGACGTTCCAGCGCCCGCCGCAGCCGGCCGGCGCGCGGCCGTCCCTGGCCACGCCGCCGCCCTCGGGCGGAGCGCAATCCGCTTCGACGAGCGGCGGGAGCGCGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCAGGCATGGCGGCGGGGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTCCTCCGCCTCAACGACCTTGACATCCACGGCGACGATGCGCCTTCCTCACAGGCTCCAACGAGGTCAGCGTTTGGTTTGCCAGTTTTCGCCGCGGGGTTGCGTTTTTTTCCCAATGTTATTACAAGATTTTAAGATTTTGAGAATTTGGTTGGTTTTTGTTTTTCTCTGTAGCTGTACGCTACTTAAAATGCTCCGGAGATGCACCGGGTGGTTAAAATTGTCCGTAGTGTTGTAATTAGCTGTGTTTGGGCTGCAAAATGCTTAGGGAAGTGTATCCTGCCATCACTTTGATGTGTGGTTGCAAGTAAGATTTTCTGGGGATGCTTATACGATTATGCTCTGTAGGTTTACCTTGCTGAAAGTGTTAATTCTATATATATACGGAGTAGTTCTCATCTGTAGTCTATTACACGTGTATACTGTACTCACGATGATCAGTAAAACATCAGTCATGTGACCTCTTTTGCTACATAGATTCCAGACTGTAGAACACTGCTGTTTGGATGCCAGTGCATGTTTTTCTGCATTATGAATTTGGAAGTACGACTTGGCAGAAGTTCTCTACCTCTTAAGGCTCCTTTTCAAAAAATAAATCCCTTCATTGTTATCTAGTTTTGTGCATTTGCAATAAGGGTTTTTGCTATGAATAAAATTATTCAGCAAGAAGAAGAAGAGAGGAGCACGAGCAGTTGGTCCTGACAAAGGTGGCAGGGGGCTGCGCCAGTTTAGTATGAAAGGTGTGTTAAATCCCATTTGTTCCCTATTAGTACACCATTTGAGTTTATTTATAAGCACCACAAGTATGTGCTATAAAAACTCATGATGACACTGTTTGTTCTTTTGCAGTTTGTGAGAAAGTTGAAAGTAAAGGGAGAACAACATACAACGAGGTTAGTGCTTTCCTCTTTCTACCGAGTTCATGTATCTTGTTCTGAGCATCTGATGGCATCATGTACGTGGTCACATCACATGGATTGAAGCAGCAAATTGAGATCACAAATGTTGCATGTGTCAGCTCCCTGTTTCTTTGCATAGTTGTCTTCTTGTTAACTCTATCCTTGAAGATTCAATCAGTTATTTCAAGAGGACTTAGGCTATGTATGCAATGTAAAACCTAATAGCAATATATGCACAGGGCAGGACTAGCTATTGCTCCAATAAGCCAACATGTTCATATTGTCCGTCCACCTGGTGGTATTGTCAAACAATTCATTATCTATAAAACTGCCATGTTCCGCATCATGATTTGGGGCTATAAAATTGGTAACTCACTCACATGTCTTATGTAACACTGCTGTTTGATCAGCTTGCTCAGATCTTACTATGGTGATGTGTTGTAATATGTGACATCCACCATATTGATCATTGTAAATCCGCTATACATATCACCCTCTTCTACTGTTATATTTAAACTAACAATCTGTCTTTGCATCTATTCATGTTCATGTTTGGAGTTCCTCAAAATTGCTAAAAACTATCATATTTTGTCTCTCTGGCAAAAAGTTGTAATAATTTTGGCTATGCATTTGTTGATAGTTTTCAATGTTTACCCTTATTGGTGAAGTCCAAGTCTCATAGTCCTTCTGACTTATCTTTATCAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAATAACAGCATTTTGCCACCAGATCCGGATAATCCCAATGCAGTTGAGAAATGACTTGCCTGCATCACCAATTATTTCTTAAGTCAGTTGTATGCTCACTTTGTGTTAAATGCAGCAACAATATGACGAGAAAAATATACGGAGAAGGGTTTATGATGCTCTGAATGTTCTGATGGCTATGGAGATTATATCTAAAGATAAAAAGGAAATTCAGTGGAAGGGGTTGCCTCGAACCAGTATAAATGATATTGAAGATTTGCAGGTTTTTCGTCTTCTTTTCCCACTGGTTATCGACATTTGATGTACTTTTGGTAGTCATATTTATTAATTTATTTATGCTCTTTTACAGACGGAACTTGTAGGACTGAAAAGTAGGATTGAGAAGAAAAATACATATTTGCAGGAGCTGCAAGACCAAGTAATGATATAGCTCAACCTGCTTTTCTTTAGTCATGTCCAATGCAATATATAAAATGAACTGTTCTACTGAGCTAGCAGTGTACCATAGTCTTCAAATTGTGTGGCTTTAGTGGTAGATACTGTGATACACATAATGCCCTTACTCGGTAACATTGTTTTTGGCATGTTAAGTTTGTAGGTATGCAAAAGTTGATACAAAGAAATGAACAGCTATATGGTTCAGGAAACATTCCCTCGGGTGGAGTTGCATTACCATTTATCCTTGTTCAGGTGAATAGTTCATAAATTCTTTGTCTTCTATTCTCTTGTTTCATGGCACTGTTTCCTGCACATGACTTCAGGCTAAATGACAAGAATGAATCATGCAGACACGGCCTCATGCAACTGTGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGGTAAAACAAGAATCCTGTTATTCTCTCCCATCTGGTCACACCTTTACAATTTATCTAGCAAGCCACACCTTTCTCTTTCTGTTTCCATTTTTCTATTCTTTCATGATATGATTGCAGAAGGTCCTCACTGGAAGGGCATCCTCTTATCTCATTTAAATTCTGGCAGTGGTCTTTTAACCCTTAAAATATAATATAATTCACTCTGTAAAAAAGAACTAAAATCTCAGCTGCTATATCAAATTTGGATGGTAGAGATTTTTGTCTCCAAACCTCTAGTGATGGGACGGTACAAGCGGAAGTGTAAATAATGTGACTTTTGAAAAGTGTTGTTAGCTTTTATTGGTTGAGCTAAGTCATCTAGTTTTAGTCCAATTACAGGTCGCAGGTCCTCATTATCCTAGTGACATTTGCCATATCACTAATTCTTGAATAATAGGGAGACATTGGCATCCTAAATTGGGAAGATGAGAGCCCAAGTGTGAAATTCATTTTACTTTTCTAAAAGAGTAAATTGCATTCACGGTACAAGAATTTGTTAGGTGGGTGCATTCTATTGTAAGAACTTGAAAACTGAACAAACTGGCTCACCAACTTGACTAGACGGTGCGCTTTTGGTCAAGGTGAATACCACACGGAATTTTCGGCCACGTTAGCAAGACATGTCATTCATGTAACATGTTTTTGCTTCTTCCTTCAAACGACAGATAGACTGAAGGTTCATTTTAGCAAATATCCCCAGTTCAATGGTAACAATATCAAATCAAAAGCTCTATAGGTCTAGATTTAGCTTTGATAGAGGGCACTGTAATCTCTTGATTGATGCATGAATCAATTCATAGTTATACTGTCAATTGAACAATGAAACTAGACAGTAGAAATTTAGCTTGATCTAAAAGGCCAACGCTTGCTTCGAGAAGACTAGCATCACCATCACCCGCCACCACCACTGACGAAGCACACAGTAACATCTTTGAGTTAGCTAGCCTGTTCGATTTTTGCCTATATATTTCCAAAGTTTGATCATGTGAACAGGAATGATATGCATTGCCACATCTTGCCGTAGATGATCTAGCTTCACAAGATTCATAGTTCACCAAAAGTAATGGATCAACCTGGGAGTCGTGAATTCATAATAAATGGAAAGAAGCAGACATTATATATCATCTGGAACAATTAGAACATGAAAAATAGTCGGGAGTTTGTTTCAAAATTGTTGGGATGGGAGATAAGCGATTTGTGTGCCTGATGTGCAATCGACAGCGTCCCTTGCTGATGTGGCAAAAATATGTAATGTGGCCTTCACTTTGAACAAATATGCACCATATAGCCAAGTTAATGGACTAATATGCTCAAATTTCAAGTTCTAGTACTAAAACACGCCCACCTGACAAGTTCTTGCACCATGAGTGCAATTTACTCTTTCTAAAAGGAACTATCAAATGAATGAAACATATCAAAATATGCCTTTTATTTTTGTTGAAAGAAATAATTTGATATCGGTGCAGCCTCTTAGATTTCCCTTAGATCAGCGTAAGTTCTTGATATTTACATTTCTGAAACTGCAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAACAAATCGACGGTATTCATGATCTAATTTCAAATGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGCATTAGTGTAGTGTGT
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| CDS seq | ATGGTCTCCGGCGTCGCCCACCGCCCGGACGACGACGGCGGGCGCGCCGCCTCGACGTTCCAGCGCCCGCCGCAGCCGGCCGGCGCGCGGCCGTCCCTGGCCACGCCGCCGCCCTCGGGCGGAGCGCAATCCGCTTCGACGAGCGGCGGGAGCGCGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCAGGCATGGCGGCGGGGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTCCTCCGCCTCAACGACCTTGACATCCACGGCGACGATGCGCCTTCCTCACAGGCTCCAACGAGCAAGAAGAAGAAGAGAGGAGCACGAGCAGTTGGTCCTGACAAAGGTGGCAGGGGGCTGCGCCAGTTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGTAAAGGGAGAACAACATACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAATAACAGCATTTTGCCACCAGATCCGGATAATCCCAATGCACAACAATATGACGAGAAAAATATACGGAGAAGGGTTTATGATGCTCTGAATGTTCTGATGGCTATGGAGATTATATCTAAAGATAAAAAGGAAATTCAGTGGAAGGGGTTGCCTCGAACCAGTATAAATGATATTGAAGATTTGCAGACGGAACTTGTAGGACTGAAAAGTAGGATTGAGAAGAAAAATACATATTTGCAGGAGCTGCAAGACCAATTTGTAGGTATGCAAAAGTTGATACAAAGAAATGAACAGCTATATGGTTCAGGAAACATTCCCTCGGGTGGAGTTGCATTACCATTTATCCTTGTTCAGACACGGCCTCATGCAACTGTGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAACAAATCGACGGTATTCATGATCTAATTTCAAATGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGCATTAG
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| Protein seq | MVSGVAHRPDDDGGRAASTFQRPPQPAGARPSLATPPPSGGAQSASTSGGSAGSPSSRSEQHVPAAAGMAAGAAAASTPISENTFLRLNDLDIHGDDAPSSQAPTSKKKKRGARAVGPDKGGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPNNSILPPDPDNPNAQQYDEKNIRRRVYDALNVLMAMEIISKDKKEIQWKGLPRTSINDIEDLQTELVGLKSRIEKKNTYLQELQDQFVGMQKLIQRNEQLYGSGNIPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDSFVLKAMSSCGEEQIDGIHDLISNGGESSSMPNIYRQQVQQPARSTNGTARLPSSPPIPGILKGRVKHEH |
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| Function | Transcription factor-like protein DPB [UniProtKB/Swiss-Prot:Q9FNY2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_03g0003930 | OsARC_03g0003930.01 | Chr03 | 2924013 | 2928713 | + | NAM | ||
| CDS seq | ATGGTCTCCGGCGTCGCCCACCGCCCGGACGACGACGGCGGGCGCGCCGCCTCGACGTTCCAGCGCCCGCCGCAGCCGGCCGGCGCGCGGCCGTCCCTGGCCACGCCGCCGCCCTCGGGCGGAGCGCAATCCGCTTCGACGAGCGGCGGGAGCGCGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCAGGCATGGCGGCGGGGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTCCTCCGCCTCAACGACCTTGACATCCACGGCGACGATGCGCCTTCCTCACAGGCTCCAACGAGCAAGAAGAAGAAGAGAGGAGCACGAGCAGTTGGTCCTGACAAAGGTGGCAGGGGGCTGCGCCAGTTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGTAAAGGGAGAACAACATACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAATAACAGCATTTTGCCACCAGATCCGGATAATCCCAATGCACAACAATATGACGAGAAAAATATACGGAGAAGGGTTTATGATGCTCTGAATGTTCTGATGGCTATGGAGATTATATCTAAAGATAAAAAGGAAATTCAGTGGAAGGGGTTGCCTCGAACCAGTATAAATGATATTGAAGATTTGCAGACGGAACTTGTAGGACTGAAAAGTAGGATTGAGAAGAAAAATACATATTTGCAGGAGCTGCAAGACCAATTTGTAGGTATGCAAAAGTTGATACAAAGAAATGAACAGCTATATGGTTCAGGAAACATTCCCTCGGGTGGAGTTGCATTACCATTTATCCTTGTTCAGACACGGCCTCATGCAACTGTGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAACAAATCGACGGTATTCATGATCTAATTTCAAATGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGCATTAG
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| Protein seq | MVSGVAHRPDDDGGRAASTFQRPPQPAGARPSLATPPPSGGAQSASTSGGSAGSPSSRSEQHVPAAAGMAAGAAAASTPISENTFLRLNDLDIHGDDAPSSQAPTSKKKKRGARAVGPDKGGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPNNSILPPDPDNPNAQQYDEKNIRRRVYDALNVLMAMEIISKDKKEIQWKGLPRTSINDIEDLQTELVGLKSRIEKKNTYLQELQDQFVGMQKLIQRNEQLYGSGNIPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDSFVLKAMSSCGEEQIDGIHDLISNGGESSSMPNIYRQQVQQPARSTNGTARLPSSPPIPGILKGRVKHEH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.060490 | 0.125704 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0152100 | RBH | 0.439617 | 0.259941 | 0.846046 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g05760 | RBH | 0.352687 | 0.468223 | 0.454672 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0152100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0004020 | RBH | 0.478472 | 0.0 | 1.783677 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0003940 | RBH | 0.259563 | 0.219668 | 0.883891 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0003980 | RBH | 1.588361 | 1.813711 | 5.096806 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0012450 | RBH | 0.050836 | 0.271319 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0004030 | RBH | 1.965705 | 5.366111 | 6.711684 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0046300 | RBH | 3.1805735 | 17.323181 | 14.594578 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0003920 | RBH | 0.094966 | 0.170494 | 0.593911 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0046700 | RBH | 2.6547925 | 10.1200735 | 6.835498 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0004030 | RBH | 0.000000 | 0.045504 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0004000 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0003970 | RBH | 1.331823 | 4.906170 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0004030 | RBH | 0.310106 | 0.364627 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0004010 | RBH | 0.0 | 3.232328 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G003980 | RBH | 0.121821 | 0.000000 | 0.846312 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0003840 | RBH | 1.916035 | 10.203609 | 3.423839 |
