Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0020210 | OGI:02058010 | 8/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:20165752-20168738 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGTCTCTTCGAGGACACCAACCAACCTCTGCGCCCCAAGGACATCCAGCTCGCGCGCCGCATCAGAGGCAAGAGGGGCCTAGCCCTTGCCTTGCCTGGAGGCTTCTTCCGTGTTCCTGGCAAACTGGCACGTTTTTTTTTTTCCAGATTTCAGTCTGTAGGTTGGGAGATGTGATGCTGTAATCGTTGTGGTTTGCTAATCTTAATGGAAATGCTATGCCGTTTGGTATTTCTGAACTGAATGAATGCTTCAAAGTGGAATGTTTCATTTTGTTTTGTGCTAATATGTTGAAATTTTTTGAAATGTTGGATCTTGCGAACTGACATTTTGCTCTGAACTGAAAAAAAAGTTTCCGCAGGGGTTGAAATTAACCCTTGAAATTTAGGCTTACATGTTTACATTCCAGGGACCGTATGCTATGCAGAAACTTGTTTCATGAATTCGTTTTACTTGCATTTCATCAAATTGCGAACATTTAGGAAAGTCAGCAAGAGATACTAATTTGACAAAATAGACACATCTCCTAGCATTTATACAATCAAAGCACAAGTGTGACAAGCTTGTACAAATGAGCTTATGCTATTGACATATCCCCATCATAATGGCATATTTCTAAACCTGCAACTCTAAGAGTGGCATGAAATCTAATCCTTCCAAAGATATCATCTCTAGTTCTCTACTCTGTTCTACAGACTAGTCCTACATGGTTCATGTAATCATGTTCACATACAGGCTACAAAATAGTCTACAGTTCTGCACCATCCACCATCCGACGATTGCAAGAGAGCTAACACTTCGTTGGCTACTGACGATAGATCATGGATGTGCTCTGAATGTCCTTGGTGGCTTGGTATGTCACAATTGATGAGCGATATGCGGGAGAATTTAACATTCAAATTGCTAATCAACACAACACCAAGTGGCTGTCACTCTGGAACTTGGTGAGCGCTATCACTGCTAATCGTCAGCTAGTCATGCTGCGTAGCATGGCTTGAACATGCTGCTGATGGATGTACCCAGGTAAATGGCTGTTCTTGGTAGCCTCAATTACTGACTGATATGAATTTGAGAAGTTGATTTGATCTTCAACAGAGGGCCAGTTCTGTCCCAAGAGTTATATTGAAGATTGAAACAAATGTGCACTATGATTTTCAACAGAGCTGTTGATTTCTACAAACCCTGAAAAGATGGACAATAAACAGCAGAAATAAACTAGCAACTTCATCCATTAACTGCTTAATGGCCAACAGAGCAGTGACGTGGGCCATGATTAACAAAAAGCTGAGTTTAATTAAAGATAAAGATCCTGCTATACCCATGTGTAGCTACAGCCATTTTTCAATTCTTGCACATTGTGACTTTAGGAAATTCTGAAAATAAAAACATTTATAGCATGTTGACCTATATTCACACACAAAATTATGTAAAGATATAATCATGTATAGGTGTGCAACAAAAATTATGTAAAGATAGATCAGCTTTCTTTCTTTGATGAAAGATAAGACGATTTAGTTTTCTTTCTCGTATAGCACAAATTGATCATATCTGCATGTAAACGTACCTTAAAATGCTCTATATGTATAGTTTTTTTCAGAATCTAAATTGCCAAGTGCAAAATCCAAAGTGGATGGAGCTACACGAGAGTTAAAAAATCTAAACACTTTATTAAATTAGAAAGTAAGGAGGTGGCAACTTCAAAGCTTCATCAACATGAAAGTGAGGAAAGAGACAACTGTGAAACTTTACCAATTTATACCTGCTGATTATGTTGATTGTTACTTGATGGCTGAGAAAGGTATGCAGCAAAACCAAGTTCCTGAAAGCAATGACCGTGTAAGTAATTTTTTCAATATTCAGATACGGCGCAAGGGGCACCATTTCTTATCAAAAAGAGAGTAACAGGCAATTGACAATACTCTTGATACAGTAGGTAAGCTTGGGCATAGGCCTGGTTGTGACTGCACTCCTCCATAATTCAGTTGCCCCATTGGAAATGGATTAGAAATGTCAAGACCCTGAAAATGAAAAAGGGAACTAAAAATTAACCATGTTACATACAATAACTAACCTCAGGGTTAGAACAGGCTACACAACTTCAGGTACATCTAACATCCATGCCCAGCATATATATTGAAAAGAATCCAGATGGCGTGATGAATTGGCCCGGCATTGGAATGTTGGACTAAAACGTTGCTGAGGCATGAACTATAGTGAATTCAAGATTCTCCAGCCCAAAATACCCATAATCATAGTCCTTTGAGCTACTATCAGTTATGACCACAGTCCATGGTGGTATGGCATAGGATTTTAAATAGAAAACCTCTGCATTGCAGAACTTAAAAGCTGTAGAAGGCCTTAGGAACTACAAAATTGAGATGAAAAATAACTTGTTCAATATAAAATTTTAATAGAAAAAGAAACAACCTGACGTTACAGGTTTTTGTGACTGATTCCAATTTTGCATGGAGTTCATATCACATTAAAAAGAACAATCTGACAGGAATTCTCAATTGAAATGACTGTAGCAATATAGGATTGTTGGGAGTTTACATAAAGCAAAGGTTCTTGATGTCACCACCAACTGGCTACCGTTTAGAATAATATCAGTTTGTGATTACTATCACGTTATGCCATCACCATATAATGAACAACAATGCTGAAATTACCTGAAATAGAACATTTCCAGGTTGAGCAGCATCCAACATGGTATATTGTATTGGGGATTGTTCTGGTTGCACTTTCTTGGTTTTTTGTAAACCTTTCTCAATACAACTTTTTCGTTGGCTTTTAGCATTACGACCTTTCTTTTTTCGTCGCTTCGGTCTTGTGCTGCTTGAATAATCCAGTGCTCTTTCTGATTCATTGTCAGTACCATTCGCAGACAAGGATATTGTTACATCCTCAATATCAGACTGAGGAGCTGACGCATCAATGCTTGTTTGTTTCTGCAGGATTTCTTCAATTTTCTTACCCAGTTCTACTGA
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| CDS seq | ATGGGTCTCTTCGAGGACACCAACCAACCTCTGCGCCCCAAGGACATCCAGCTCGCGCGCCGCATCAGAGGCAAGAGGGGCCTAGCCCTTGCCTTGCCTGGAGGCTTCTTCCGTGTTCCTGGCAAACTGGCACGTTGGGAGATGCTACAAAATAGTCTACAGTTCTGCACCATCCACCATCCGACGATTGCAAGAGAGCTAACACTTCGTTGGCTACTGACGATAGATCATGGATGTGCTCTGAATGTCCTTGGTGGCTTGGATTTCTTCAATTTTCTTACCCAGTTCTACTGA |
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| Protein seq | MGLFEDTNQPLRPKDIQLARRIRGKRGLALALPGGFFRVPGKLARWEMLQNSLQFCTIHHPTIARELTLRWLLTIDHGCALNVLGGLDFFNFLTQFY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0020210 | OsARC_02g0020210.01 | Chr02 | 20165752 | 20168738 | + | NAM | ||
| CDS seq | ATGGGTCTCTTCGAGGACACCAACCAACCTCTGCGCCCCAAGGACATCCAGCTCGCGCGCCGCATCAGAGGCAAGAGGGGCCTAGCCCTTGCCTTGCCTGGAGGCTTCTTCCGTGTTCCTGGCAAACTGGCACGTTGGGAGATGCTACAAAATAGTCTACAGTTCTGCACCATCCACCATCCGACGATTGCAAGAGAGCTAACACTTCGTTGGCTACTGACGATAGATCATGGATGTGCTCTGAATGTCCTTGGTGGCTTGGATTTCTTCAATTTTCTTACCCAGTTCTACTGA
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| Protein seq | MGLFEDTNQPLRPKDIQLARRIRGKRGLALALPGGFFRVPGKLARWEMLQNSLQFCTIHHPTIARELTLRWLLTIDHGCALNVLGGLDFFNFLTQFY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.030092 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0542100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0542100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020370 | RBH | 0.000000 | 0.000000 | 1.129540 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0020480 | RBH | 0.000000 | 1.597313 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0020450 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0332100 | RBH | 0.4881975 | 1.0487935 | 0.9285735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0354200 | RBH | 0 | 0.0286975 | 0.0629735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G020500 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
