Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0009710 | OGI:02022010 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:7405637-7406141 | ||||||||
| Gene Symbol | SMCP1, OsSMCP1 | ||||||||||
| DNA seq | GAGCTGCTCCTCGCTACGCCGCCGCCAGCGACGGCCGACGACCCGGGCCTCGTCGTCTACTGGGGCCGCCACAAGGAGGAAGGCTCCCTGAGAAAGGCCTGCGACACCGGCCACTACACCACCGTCATCATCACCTTCTACAACGTCTTCGGCTACGGCCGCTACTCGCTCGACATATCCGGCCACCCGCTTGCCGCCGTCGGTGCCGACATTGATCAAGCACTGCCAGTCCAGGGGCATCACCGTGCTCCTCTCCATCGGCGGCCAGGGCGGCGGCTACTCCCTCCCCACCCACGCCTCCGCCGCCGACGTCGCCTACAACCTGATCTGGAACGCCTACCTAGGCGGCCACCGCGCCGGCGTGCACCGCCCCTTCGGCGACGACGCGGCGGTGGACGGCATCGACTTCTTCATTGACCAGGGCGGCGCCTACCACTACGACGACCTCGCCCGGCTGCTCAACGGCTACAACAAGTATTATGATGACCTCGCACTGCAGGTTTAA
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| CDS seq | GAGCTGCTCCTCGCTACGCCGCCGCCAGCGACGGCCGACGACCCGGGCCTCGTCGTCTACTGGGGCCGCCACAAGGAGGAAGGCTCCCTGAGAAAGGCCTGCGACACCGGCCACTACACCACCGTCATCATCACCTTCTACAACGTCTTCGGCTACGGCCGCTACTCGCTCGACATATCCGGCCACCCGCTTGCCGCCTCCAGGGGCATCACCGTGCTCCTCTCCATCGGCGGCCAGGGCGGCGGCTACTCCCTCCCCACCCACGCCTCCGCCGCCGACGTCGCCTACAACCTGATCTGGAACGCCTACCTAGGCGGCCACCGCGCCGGCGTGCACCGCCCCTTCGGCGACGACGCGGCGGTGGACGGCATCGACTTCTTCATTGACCAGGGCGGCGCCTACCACTACGACGACCTCGCCCGGCTGCTCAACGGCTACAACAAGTATTATGATGACCTCGCACTGCAGGTTTAA
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| Protein seq | ELLLATPPPATADDPGLVVYWGRHKEEGSLRKACDTGHYTTVIITFYNVFGYGRYSLDISGHPLAASRGITVLLSIGGQGGGYSLPTHASAADVAYNLIWNAYLGGHRAGVHRPFGDDAAVDGIDFFIDQGGAYHYDDLARLLNGYNKYYDDLALQV |
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| Function | Xylanase inhibitor protein 2 [UniProtKB/Swiss-Prot:Q53NL5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0009710 | OsARC_02g0009710.01 | Chr02 | 7405637 | 7406141 | + | NAM | ||
| CDS seq | GAGCTGCTCCTCGCTACGCCGCCGCCAGCGACGGCCGACGACCCGGGCCTCGTCGTCTACTGGGGCCGCCACAAGGAGGAAGGCTCCCTGAGAAAGGCCTGCGACACCGGCCACTACACCACCGTCATCATCACCTTCTACAACGTCTTCGGCTACGGCCGCTACTCGCTCGACATATCCGGCCACCCGCTTGCCGCCTCCAGGGGCATCACCGTGCTCCTCTCCATCGGCGGCCAGGGCGGCGGCTACTCCCTCCCCACCCACGCCTCCGCCGCCGACGTCGCCTACAACCTGATCTGGAACGCCTACCTAGGCGGCCACCGCGCCGGCGTGCACCGCCCCTTCGGCGACGACGCGGCGGTGGACGGCATCGACTTCTTCATTGACCAGGGCGGCGCCTACCACTACGACGACCTCGCCCGGCTGCTCAACGGCTACAACAAGTATTATGATGACCTCGCACTGCAGGTTTAA
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| Protein seq | ELLLATPPPATADDPGLVVYWGRHKEEGSLRKACDTGHYTTVIITFYNVFGYGRYSLDISGHPLAASRGITVLLSIGGQGGGYSLPTHASAADVAYNLIWNAYLGGHRAGVHRPFGDDAAVDGIDFFIDQGGAYHYDDLARLLNGYNKYYDDLALQV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0701100 | SBH | 0.0 | 0.0 | 1.183175 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g01770 | SBH | 0.0 | 0.0 | 2.576369 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0701100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0009910 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0009990 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0009860 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0000510 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0009830 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0125200 | RBH | 0.098436 | 0.1650875 | 0.012771 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0009630 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0128300 | RBH | 0.0350795 | 1.2401005 | 0.1025665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010100 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0009780 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0010090 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010110 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0009800 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G009980 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0009810 | RBH | 0.0 | 0.0 | 0.0 |
