Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0701100 | OGI:11083430 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:28730171-28731320 | ||||||||
| Gene Symbol | riceXIP | ||||||||||
| DNA seq | ACACAGCAACTTGCTTTACATTGCTGCAAACATGGGCCTCGTGCACGCACTCCTCCCCTTCGCAGCAGCAGCAGCATTGCTGCTCCTCGCCGCGCCGCCGCCGGCGACGGCCGACGACCCGGGCCTCGCCGTCTACTGGGGCCGCCACAAGGAGGAGGGCTCACTGAGAGAGGCCTGCGACACCGGCCGCTACACCACCGTCATCATCACCTTCTACAACGCCTTCGGCCACGGCCGCTACTCCCTCGACATCTCCGGCCACCCGCTCGCCGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAGGGGCATCACCGTGCTCCTCTCAATCGGCGGCCAGGGCGGCGCCTACTCCCTCCCCACCAACGCCTCCGCCGCCGACGTCGCCGACAACCTCTGGAACGCCTACCTCGGCGGCCACCGCGCCGGGGTGGCGCGCCCCTTCGGCGACGACGCGGCGGTGGACGGCATCGACTTCTTCATCGACCAGGGCGGCGCCGACCACTACGACGACCTCGCCCGGCGGCTCGACGGCTACAACAAGTACTACCGGGGCAGGGTCGGCGTGCTCTTGACGGCGACGACGAGGTGCTCGTACCCGGACCACCGGCTGGAGAAGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCATGTGAGGATGTTCGGTGACGAGCAGTGCACCATGTCGCCGAGGTACTCGTGGGAGAAGTGGGCGGCGGCGTTCCCCGGCAGCAAGGTGTACATCGGGCTGGTGGCGTCGCCGGAGCAGGACAGCGCGTGGATGTTTCAGAAGGATCTCTACTACGAGATGCTGCAGTTCGTCAGGTCGCTGCCCAACTATGGTGGCTTGGCCATCTATGACAGGTACTTCGACAAGAAGGCCAACTACACTGGTGAGGGTTAATTAGCTAGTGATCATCGTCTTTGCTGTCTGAAGTGAAGACTAGATTTTTACCATTATGTAAAAGATCTGAATAAAGACACCTCTTTTTTCTGTAACATTGTGATTTTGATGTACTTCAATAATGGACGAATAAAATGAGGTCTCAAAAGCTATGTTGGCATCCCTCCAAAAAAAAAAAGGAAAGAAGGTTATGTATGGATCAGATCTCAAATAATGCTTAATAAATTAATCATCACTGGCTGTAAT
More
|
||||||||||
| CDS seq | ATGGGCCTCGTGCACGCACTCCTCCCCTTCGCAGCAGCAGCAGCATTGCTGCTCCTCGCCGCGCCGCCGCCGGCGACGGCCGACGACCCGGGCCTCGCCGTCTACTGGGGCCGCCACAAGGAGGAGGGCTCACTGAGAGAGGCCTGCGACACCGGCCGCTACACCACCGTCATCATCACCTTCTACAACGCCTTCGGCCACGGCCGCTACTCCCTCGACATCTCCGGCCACCCGCTCGCCGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAGGGGCATCACCGTGCTCCTCTCAATCGGCGGCCAGGGCGGCGCCTACTCCCTCCCCACCAACGCCTCCGCCGCCGACGTCGCCGACAACCTCTGGAACGCCTACCTCGGCGGCCACCGCGCCGGGGTGGCGCGCCCCTTCGGCGACGACGCGGCGGTGGACGGCATCGACTTCTTCATCGACCAGGGCGGCGCCGACCACTACGACGACCTCGCCCGGCGGCTCGACGGCTACAACAAGTACTACCGGGGCAGGGTCGGCGTGCTCTTGACGGCGACGACGAGGTGCTCGTACCCGGACCACCGGCTGGAGAAGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCATGTGAGGATGTTCGGTGACGAGCAGTGCACCATGTCGCCGAGGTACTCGTGGGAGAAGTGGGCGGCGGCGTTCCCCGGCAGCAAGGTGTACATCGGGCTGGTGGCGTCGCCGGAGCAGGACAGCGCGTGGATGTTTCAGAAGGATCTCTACTACGAGATGCTGCAGTTCGTCAGGTCGCTGCCCAACTATGGTGGCTTGGCCATCTATGACAGGTACTTCGACAAGAAGGCCAACTACACTGGTGAGGGTTAA
More
|
||||||||||
| Protein seq | MGLVHALLPFAAAAALLLLAAPPPATADDPGLAVYWGRHKEEGSLREACDTGRYTTVIITFYNAFGHGRYSLDISGHPLAAVGADIKHCQSRGITVLLSIGGQGGAYSLPTNASAADVADNLWNAYLGGHRAGVARPFGDDAAVDGIDFFIDQGGADHYDDLARRLDGYNKYYRGRVGVLLTATTRCSYPDHRLEKALATGVFARIHVRMFGDEQCTMSPRYSWEKWAAAFPGSKVYIGLVASPEQDSAWMFQKDLYYEMLQFVRSLPNYGGLAIYDRYFDKKANYTGEG |
||||||||||
| Function | Xylanase inhibitor protein 2 [UniProtKB/Swiss-Prot:Q53NL5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0701100 | Os11t0701100-01 | Chr11 | 28730171 | 28731320 | + | irgsp1_rep | ||
| CDS seq | ATGGGCCTCGTGCACGCACTCCTCCCCTTCGCAGCAGCAGCAGCATTGCTGCTCCTCGCCGCGCCGCCGCCGGCGACGGCCGACGACCCGGGCCTCGCCGTCTACTGGGGCCGCCACAAGGAGGAGGGCTCACTGAGAGAGGCCTGCGACACCGGCCGCTACACCACCGTCATCATCACCTTCTACAACGCCTTCGGCCACGGCCGCTACTCCCTCGACATCTCCGGCCACCCGCTCGCCGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAGGGGCATCACCGTGCTCCTCTCAATCGGCGGCCAGGGCGGCGCCTACTCCCTCCCCACCAACGCCTCCGCCGCCGACGTCGCCGACAACCTCTGGAACGCCTACCTCGGCGGCCACCGCGCCGGGGTGGCGCGCCCCTTCGGCGACGACGCGGCGGTGGACGGCATCGACTTCTTCATCGACCAGGGCGGCGCCGACCACTACGACGACCTCGCCCGGCGGCTCGACGGCTACAACAAGTACTACCGGGGCAGGGTCGGCGTGCTCTTGACGGCGACGACGAGGTGCTCGTACCCGGACCACCGGCTGGAGAAGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCATGTGAGGATGTTCGGTGACGAGCAGTGCACCATGTCGCCGAGGTACTCGTGGGAGAAGTGGGCGGCGGCGTTCCCCGGCAGCAAGGTGTACATCGGGCTGGTGGCGTCGCCGGAGCAGGACAGCGCGTGGATGTTTCAGAAGGATCTCTACTACGAGATGCTGCAGTTCGTCAGGTCGCTGCCCAACTATGGTGGCTTGGCCATCTATGACAGGTACTTCGACAAGAAGGCCAACTACACTGGTGAGGGTTAA
More
|
|||||||
| Protein seq | MGLVHALLPFAAAAALLLLAAPPPATADDPGLAVYWGRHKEEGSLREACDTGRYTTVIITFYNAFGHGRYSLDISGHPLAAVGADIKHCQSRGITVLLSIGGQGGAYSLPTNASAADVADNLWNAYLGGHRAGVARPFGDDAAVDGIDFFIDQGGADHYDDLARRLDGYNKYYRGRVGVLLTATTRCSYPDHRLEKALATGVFARIHVRMFGDEQCTMSPRYSWEKWAAAFPGSKVYIGLVASPEQDSAWMFQKDLYYEMLQFVRSLPNYGGLAIYDRYFDKKANYTGEG
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0701100 | Os11t0701100-02 | Chr11 | 28730219 | 28731225 | + | irgsp1_rep | ||
| CDS seq | CTCCTCCCCTTCGCAGCAGCAGCAGCATTGCTGCTCCTCGCCGCGCCGCCGCCGGCGACGGCCGACGACCCGGGCCTCGCCGTCTACTGGGGCCGCCACAAGGAGGAGGGCTCACTGAGAGAGGCCTGCGACACCGGCCGCTACACCACCGTCATCATCACCTTCTACAACGCCTTCGGCCACGGCCGCTACTCCCTCGACATCTCCGGCCACCCGCTCGCCGCCGTCGGCGCCGACATCAAGCACTGCCAGTCCAGGGGCATCACCGTGCTCCTCTCAATCGGCGGCCAGGGCGGCGCCTACTCCCTCCCCACCAACGCCTCCGCCGCCGACGTCGCCGACAACCTCTGGAACGCCTACCTCGGCGGCCACCGCGCCGGGGTGGCGCGCCCCTTCGGCGACGACGCGGCGGTGGACGGCATCGACTTCTTCATCGACCAGGGCGGCGCCGACCACTACGACGACCTCGCCCGGCGGCTCGACGGCTACAACAAGTACTACCGGGGCAGGGTCGGCGTGCTCTTGACGGCGACGACGAGGTGCTCGTACCCGGACCACCGGCTGGAGAAGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCATGTGAGGATGTTCGGTGACGAGCAGTGCACCATGTCGCCGAGGTACTCGTGGGAGAAGTGGGCGGCGGCGTTCCCCGGCAGCAAGGTGTACATCGGGCTGGTGGCGTCGCCGGAGCAGGACAGCGCGTGGATGTTTCAGAAGGATCTCTACTACGAGATGCTGCAGTTCGTCAGGTCGCTGCCCAACTATGGTGGCTTGGCCATCTATGACAGGTACTTCGACAAGAAGGCCAACTACACTGGTGAGGGTTAA
More
|
|||||||
| Protein seq | LLPFAAAAALLLLAAPPPATADDPGLAVYWGRHKEEGSLREACDTGRYTTVIITFYNAFGHGRYSLDISGHPLAAVGADIKHCQSRGITVLLSIGGQGGAYSLPTNASAADVADNLWNAYLGGHRAGVARPFGDDAAVDGIDFFIDQGGADHYDDLARRLDGYNKYYRGRVGVLLTATTRCSYPDHRLEKALATGVFARIHVRMFGDEQCTMSPRYSWEKWAAAFPGSKVYIGLVASPEQDSAWMFQKDLYYEMLQFVRSLPNYGGLAIYDRYFDKKANYTGEG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0701100 | RBH | 0.0 | 0.0 | 1.183175 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g47520 | RBH | 0.0 | 0.0 | 0.260139 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0701500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024770 | SBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024770 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0024260 | RBH | 0.0 | 1.597823 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0024290 | RBH | 0.0 | 0.149712 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024590 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0448800 | RBH | 0.0139015 | 0.060445 | 0.363602 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0025130 | SBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0444800 | RBH | 0.052883 | 0.074352 | 0.0241125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024910 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0025010 | SBH | 0.075749 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0024400 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0024110 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024500 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024490 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024700 | SBH | 0.0 | 0.000000 | 0.0 |
