Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0005200 | OGI:08031460 | 14/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:3611089-3611397 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CACTGATGGAGGATACAGGGATATCGGTTGAGGAATTGTTGGAGTACCAACAAATTGTCAGCAAGACATTCAATAGTGAGGATGAAGGAATTCACTTCTACAACAAGTACGCTTGGGATAAAGGCTTTAGCATAAGAAAATCATATGCTGAAAGAAGAAATGCCGCAAAAGAGGTCAAACGGAGAAGAACCTATGACCTTTTGTTGTAAAAAGGCTGTTGTTGATGAAGTTTGTCTGACATATTTATCTAGCGGGTATGATATTGGTGTTTGTGAGCATGCTCACCATGAGTCAGACTACTTGTGTTGA |
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| CDS seq | ATGGAGGATACAGGGATATCGGTTGAGGAATTGTTGGAGTACCAACAAATTGTCAGCAAGACATTCAATAGTGAGGATGAAGGAATTCACTTCTACAACAAGTACGCTTGGGATAAAGGCTTTAGCATAAGAAAATCATATGCTGAAAGAAGAAATGCCGCAAAAGAGGCTGTTGTTGATGAAGTTTGTCTGACATATTTATCTAGCGGGTATGATATTGGTGTTTGTGAGCATGCTCACCATGAGTCAGACTACTTGTGTTGA |
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| Protein seq | MEDTGISVEELLEYQQIVSKTFNSEDEGIHFYNKYAWDKGFSIRKSYAERRNAAKEAVVDEVCLTYLSSGYDIGVCEHAHHESDYLC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0005200 | OsARC_02g0005200.01 | Chr02 | 3611089 | 3611397 | + | NAM | ||
| CDS seq | ATGGAGGATACAGGGATATCGGTTGAGGAATTGTTGGAGTACCAACAAATTGTCAGCAAGACATTCAATAGTGAGGATGAAGGAATTCACTTCTACAACAAGTACGCTTGGGATAAAGGCTTTAGCATAAGAAAATCATATGCTGAAAGAAGAAATGCCGCAAAAGAGGCTGTTGTTGATGAAGTTTGTCTGACATATTTATCTAGCGGGTATGATATTGGTGTTTGTGAGCATGCTCACCATGAGTCAGACTACTTGTGTTGA
More
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| Protein seq | MEDTGISVEELLEYQQIVSKTFNSEDEGIHFYNKYAWDKGFSIRKSYAERRNAAKEAVVDEVCLTYLSSGYDIGVCEHAHHESDYLC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0202800 | SBH | 0.969293 | 0.639478 | 4.693256 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g10840 | SBH | 0.576450 | 0.384859 | 1.157583 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0202800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0005360 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005490 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0005310 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0009950 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0005260 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0064600 | SBH | 5.087759 | 12.2375955 | 8.7875055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0005220 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0067400 | SBH | 3.279005 | 9.3718395 | 13.868906 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0005610 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0005210 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0005510 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0005450 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005230 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G005390 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0005360 | RBH | 0.0 | 0.0 | 0.0 |
