Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0202800 | OGI:02016870 | 13/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:5750577-5753676 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGTAGGAAGTTAACTCCAAGTAGATGGAGAGCTGATGATATGCCCAGAATTATGTATGATTCATCCCTGAACAAAGAGGAGAAAAAGTTAAGAGAACTACAGCAACTAGAGAATTGGATGCCCTCTATCTATGATGAGACCAACATGATTCTCTTTGAATTTTTTTTCCTTTTTGGAGTAGTGCCTCACACAGTTAAGAACTGAGATTTGAATTTAACATAAACAGAAAATAACAGTTGATTGTAGGTGCCTCTCCTTCTAGCAGTGCATTTCCATTTTCCTCCTTGAGAACACTTTTTTCTAGTATTTTTGCAGGTTAGGCGGTTAGGCCCCTTCGCTGTACATTGATTCTGAATGGCCTAAACTTTCTGCCATTGCACCATTGCAAAAACCAGAAGATTGACCGGTATCATTTCCATTTCCATTTAAGTTTATGTGACTAAGTAAATTTTCTACTTCACATGTCAACTTATCTACCCCACTTTCCAAAAACTGAAGCGCCTTTTCTGACATCGAATATCTTAGAGCAACTGAGTGCATCTTTTGAGATATACGCGCACATCTTAACATCGAACTTCCATTGCCGCTTTGGGAATTGTTTCTGCAGCCAAATAGTCCGGCTTTTGCATATTTTGTCCACCTTTTGTAAACATAGTGTGAGGGGAATGTAAAAATATTGCTGTAGTTAAGGACTCGCAGCGCGTGCTTGCATAGCATACCTACAAAAACATGCAATCTCCGATTATAGCAAGAAAATCAAACTTTTACGTTTTGGAAACATAACCAATATGGTAGCATACCTGTGCACTCATACATCCTGCAAGAACATGATACTGTTGTATCCTCAGAATTAAAAACAACATATGCTTCTTCTTCAGAATTTAAAGGTGTCAATTTGTAAGTACTGATTGTTCTGTCTTGTGATAGCAACGAACAAGACAGAGTGAACAATTTTTTGAATTCTTCTTCAAAATGCGAATACAAATTCCTTGTATAGGACTCAGCAGCCGTCTTCAACATAGGCAAATCAGGAACATAGGGAACCGGACTGGTTTGACGGGAATTATAATCTGCTTCTAGTTCATTTTGGCGGAAACTAGTTATGCACTTCTCATACTCCTCTAAGAATTCTGGAAGGCAGAGTTTCCTCCGAAAATTCTTCAATGCATCACTTGTGCCTTCAGCATTTTGGATTGTCATCATGTCAGCGTAAAATGAGTCACGGGAATACACAGCAGCCCACTTTTCACGCATTGCATATAAATTATTCATCCAATCATTGCCGTCTAGATTATATGCGTTAACCAATTCCTTCCACTTCAAGTCAAAGAACGTTACAGACCTTTCTTCATAGATACGTCTCTTAAAATCAGATAGAAATTCTGGATGGTTGCAAATTACGTGATTCAAATGCTTAACAGCATTATGACAGATATGCCGCAAACACAGGCGGTGACTTGAGTTTGGAAACACTAACCTAACAGACTTTATTATTTCAGCAGAGGGATCTGTGAAAATTGTTGCCGGTTGCTTCCCAGACATTGCCGTAAGGAAGGTTTGAAACAGCCAATTGAAAGACTCTGAAGATTCATCATATATCAGCGAAGCTCCAAACAAAATGGGTTGTTTGTGATGGTTAGTCCCCACAAATGGAGCAAACGGCATTTCAAACTTGTTTGTTTCAAATGTTGTATCAAAAGACACGACATCACCAAAACAAGCATAATCCACAATAGCTTGACAATCTGTCCAGAAGAAGTTTGCTATTCGACCATCATCATTCAGCTGAACTGCATAAAAAAATGAAGGATTTTCTGTTTGTTTGTTCTTCAAATACTCAAGCAATTTCTGTGCATAACTTGGTTGGAGGTACTTTCTCTGAGTATCTTTCTTCAGAAGATGCACATTTTCAGCTCCCCTGGACCATTGCCGAAATACTCTTTGCATATCAGCTGCTGTAATACCTTCTTGCCGCATTTCATTCACTATCTGTTGATATGACGGTGTCAAACGGCGCTGGGACCTTAACATGTGTGACTTATCAGGACTTACGAGATAGTGCTTATGATCGAGCTCAACCTTCTGCACTGTCCAGATACCTTCTCGGGAAATATAGAACTGAAGACGAGCCTTGCAATCAGATCTTGTTGAAGAACGTTTCTTCCGCCCCGGCTGGGTAGTGCTTGCCACCGGCTGCCCTTCATTGCTGCACAGGAAATATTTGGAGCAAAGACTCCCATCCGCCCTAGTATTTGCGTGGTTCTTCCGGATACTAAACCCAACATTTCTAGCATAGGAGTTGTAGAAATCATAAGCTTCGTTCTCTGAATTAAAGGTCATCCCCACTTTTGGCACACAGTTAGGTAAACCACCTTGATCATGATCCTACACAACATGGATGGTAAAATAAAAATAAGAAAGATGTTCACTTTAGGGACAACAAAAATACTAACAATGTTCAAACTGTCAAGGAATAATTTGGTTTGGTGACACCGAAAGATCAAATTCGTGTATATTGAACATAGAAATATCCAGGTACACGTGTCCACTTATTTTTTTAATAAAATACTTCATCCGTTTCACAATATAAGACTTTCTAGCATTGTCCACGATTTATATGAACGTGAACAATGCTAGAAAGTCTTACAATATGAAACGGAGAAAGTACATAATTGCTGCAAGCAAAATCATTCTACTGCTATACCTCAAATGAACAATGAGCAATATCAAGAGGACATCAAAATCAAGCCAAACCAAAGGTCATTACCCCAAGCTGAGGAGTCACCGCGGGGGGCAGCCCGCTAGCGGAGGGCTCACGACCGCCGGCGGGCACCGACGAGGAGGGCGCCGGCGGATCGCTAGCGGCGGCGGAAACGGGGAGCGGGCCAGAGCCAGGGGAGGGCTCGCAGGGCCCTTGAGCCGTCCAGGCGAGGGGAACGACGGGGCCGGACATCGCCGCCGGCCCACTCGCGGTCGGGGGCGCAACGTCGCCGGCGGCGAGCGGTTTAGGGCACGGGCGGAGAGGGAAATCCTGCGGACGCCGACTCGCTTCGCCCCATGGCGTGGCGCGGTTGTTCACTTCCGCTCCTCCGTCAAATGG
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| CDS seq | ATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGGCCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCGCCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCCCCCGCGGTGACTCCTCAGCTTGGGGATCATGATCAAGGTGGTTTACCTAACTGTGTGCCAAAAGTGGGGATGACCTTTAATTCAGAGAACGAAGCTTATGATTTCTACAACTCCTATGCTAGAAATGTTGGGTTTAGTATCCGGAAGAACCACGCAAATACTAGGGCGGATGGGAGTCTTTGCTCCAAATATTTCCTGTGCAGCAATGAAGGGCAGCCGGTGGCAAGCACTACCCAGCCGGGGCGGAAGAAACGTTCTTCAACAAGATCTGATTGCAAGGCTCGTCTTCAGTTCTATATTTCCCGAGAAGGTATCTGGACAGTGCAGAAGGTTGAGCTCGATCATAAGCACTATCTCGTAAGTCCTGATAAGTCACACATGTTAAGGTCCCAGCGCCGTTTGACACCGTCATATCAACAGATAGTGAATGAAATGCGGCAAGAAGGTATTACAGCAGCTGATATGCAAAGAGTATTTCGGCAATGGTCCAGGGGAGCTGAAAATGTGCATCTTCTGAAGAAAGATACTCAGAGAAAGTACCTCCAACCAAGTTATGCACAGAAATTGCTTGAGTATTTGAAGAACAAACAAACAGAAAATCCTTCATTTTTTTATGCAGTTCAGCTGAATGATGATGGTCGAATAGCAAACTTCTTCTGGACAGATTGTCAAGCTATTGTGGATTATGCTTGTTTTGGTGATGTCGTGTCTTTTGATACAACATTTGAAACAAACAAGTTTGAAATGCCGTTTGCTCCATTTGTGGGGACTAACCATCACAAACAACCCATTTTGTTTGGAGCTTCGCTGATATATGATGAATCTTCAGAGTCTTTCAATTGGCTGTTTCAAACCTTCCTTACGGCAATGTCTGGGAAGCAACCGGCAACAATTTTCACAGATCCCTCTGCTGAAATAATAAAGTCTGTTAGGTTAGTGTTTCCAAACTCAAGTCACCGCCTGTGTTTGCGGCATATCTGTCATAATGCTGTTAAGCATTTGAATCACGTAATTTGCAACCATCCAGAATTTCTATCTGATTTTAAGAGACGTATCTATGAAGAAAGGTCTGTAACGTTCTTTGACTTGAAGTGGAAGGAATTGGTTAACGCATATAATCTAGACGGCAATGATTGGATGAATAATTTATATGCAATGCGTGAAAAGTGGGCTGCTGTGTATTCCCGTGACTCATTTTACGCTGACATGATGACAATCCAAAATGCTGAAGGCACAAGTGATGCATTGAAGAATTTTCGGAGGAAACTCTGCCTTCCAGAATTCTTAGAGGAGTATGAGAAGTGCATAACTAGTTTCCGCCAAAATGAACTAGAAGCAGATTATAATTCCCGTCAAACCAGTCCGGTTCCCTATGTTCCTGATTTGCCTATGTTGAAGACGGCTGCTGAGTCCTATACAAGGAATTTGTATTCGCATTTTGAAGAAGAATTCAAAAAATTGTTCACTCTGTCTTGTTCGTTGCTATCACAAGACAGAACAATCAGTACTTACAAATTGACACCTTTAAATTCTGAAGAAGAAGCATATGTTGTTTTTAATTCTGAGGATACAACAGTATCATGTTCTTGCAGGATGTATGAGTGCACAGGTATGCTATGCAAGCACGCGCTGCGAGTCCTTAACTACAGCAATATTTTTACATTCCCCTCACACTATGTTTACAAAAGGTGGACAAAATATGCAAAAGCCGGACTATTTGGCTGCAGAAACAATTCCCAAAGCGGCAATGGAAGTTCGATGTTAAGATGTGCGCGTATATCTCAAAAGATGCACTCAGTTGCTCTAAGATATTCGATGTCAGAAAAGGCGCTTCAGTTTTTGGAAAGTGGGGTAGATAAGTTGACATGTGAAGTAGAAAATTTACTTAGTCACATAAACTTAAATGGAAATGGAAATGATACCGGTCAATCTTCTGGTTTTTGCAATGGTGCAATGGCAGAAAGTTTAGGCCATTCAGAATCAATGTACAGCGAAGGGGCCTAA
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| Protein seq | MSGPVVPLAWTAQGPCEPSPGSGPLPVSAAASDPPAPSSSVPAGGREPSASGLPPAVTPQLGDHDQGGLPNCVPKVGMTFNSENEAYDFYNSYARNVGFSIRKNHANTRADGSLCSKYFLCSNEGQPVASTTQPGRKKRSSTRSDCKARLQFYISREGIWTVQKVELDHKHYLVSPDKSHMLRSQRRLTPSYQQIVNEMRQEGITAADMQRVFRQWSRGAENVHLLKKDTQRKYLQPSYAQKLLEYLKNKQTENPSFFYAVQLNDDGRIANFFWTDCQAIVDYACFGDVVSFDTTFETNKFEMPFAPFVGTNHHKQPILFGASLIYDESSESFNWLFQTFLTAMSGKQPATIFTDPSAEIIKSVRLVFPNSSHRLCLRHICHNAVKHLNHVICNHPEFLSDFKRRIYEERSVTFFDLKWKELVNAYNLDGNDWMNNLYAMREKWAAVYSRDSFYADMMTIQNAEGTSDALKNFRRKLCLPEFLEEYEKCITSFRQNELEADYNSRQTSPVPYVPDLPMLKTAAESYTRNLYSHFEEEFKKLFTLSCSLLSQDRTISTYKLTPLNSEEEAYVVFNSEDTTVSCSCRMYECTGMLCKHALRVLNYSNIFTFPSHYVYKRWTKYAKAGLFGCRNNSQSGNGSSMLRCARISQKMHSVALRYSMSEKALQFLESGVDKLTCEVENLLSHINLNGNGNDTGQSSGFCNGAMAESLGHSESMYSEGA |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0202800 | OsNip_02t0202800-01 | Chr02 | 5750577 | 5753676 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGGCCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCGCCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCCCCCGCGGTGACTCCTCAGCTTGGGGATCATGATCAAGGTGGTTTACCTAACTGTGTGCCAAAAGTGGGGATGACCTTTAATTCAGAGAACGAAGCTTATGATTTCTACAACTCCTATGCTAGAAATGTTGGGTTTAGTATCCGGAAGAACCACGCAAATACTAGGGCGGATGGGAGTCTTTGCTCCAAATATTTCCTGTGCAGCAATGAAGGGCAGCCGGTGGCAAGCACTACCCAGCCGGGGCGGAAGAAACGTTCTTCAACAAGATCTGATTGCAAGGCTCGTCTTCAGTTCTATATTTCCCGAGAAGGTATCTGGACAGTGCAGAAGGTTGAGCTCGATCATAAGCACTATCTCGTAAGTCCTGATAAGTCACACATGTTAAGGTCCCAGCGCCGTTTGACACCGTCATATCAACAGATAGTGAATGAAATGCGGCAAGAAGGTATTACAGCAGCTGATATGCAAAGAGTATTTCGGCAATGGTCCAGGGGAGCTGAAAATGTGCATCTTCTGAAGAAAGATACTCAGAGAAAGTACCTCCAACCAAGTTATGCACAGAAATTGCTTGAGTATTTGAAGAACAAACAAACAGAAAATCCTTCATTTTTTTATGCAGTTCAGCTGAATGATGATGGTCGAATAGCAAACTTCTTCTGGACAGATTGTCAAGCTATTGTGGATTATGCTTGTTTTGGTGATGTCGTGTCTTTTGATACAACATTTGAAACAAACAAGTTTGAAATGCCGTTTGCTCCATTTGTGGGGACTAACCATCACAAACAACCCATTTTGTTTGGAGCTTCGCTGATATATGATGAATCTTCAGAGTCTTTCAATTGGCTGTTTCAAACCTTCCTTACGGCAATGTCTGGGAAGCAACCGGCAACAATTTTCACAGATCCCTCTGCTGAAATAATAAAGTCTGTTAGGTTAGTGTTTCCAAACTCAAGTCACCGCCTGTGTTTGCGGCATATCTGTCATAATGCTGTTAAGCATTTGAATCACGTAATTTGCAACCATCCAGAATTTCTATCTGATTTTAAGAGACGTATCTATGAAGAAAGGTCTGTAACGTTCTTTGACTTGAAGTGGAAGGAATTGGTTAACGCATATAATCTAGACGGCAATGATTGGATGAATAATTTATATGCAATGCGTGAAAAGTGGGCTGCTGTGTATTCCCGTGACTCATTTTACGCTGACATGATGACAATCCAAAATGCTGAAGGCACAAGTGATGCATTGAAGAATTTTCGGAGGAAACTCTGCCTTCCAGAATTCTTAGAGGAGTATGAGAAGTGCATAACTAGTTTCCGCCAAAATGAACTAGAAGCAGATTATAATTCCCGTCAAACCAGTCCGGTTCCCTATGTTCCTGATTTGCCTATGTTGAAGACGGCTGCTGAGTCCTATACAAGGAATTTGTATTCGCATTTTGAAGAAGAATTCAAAAAATTGTTCACTCTGTCTTGTTCGTTGCTATCACAAGACAGAACAATCAGTACTTACAAATTGACACCTTTAAATTCTGAAGAAGAAGCATATGTTGTTTTTAATTCTGAGGATACAACAGTATCATGTTCTTGCAGGATGTATGAGTGCACAGGTATGCTATGCAAGCACGCGCTGCGAGTCCTTAACTACAGCAATATTTTTACATTCCCCTCACACTATGTTTACAAAAGGTGGACAAAATATGCAAAAGCCGGACTATTTGGCTGCAGAAACAATTCCCAAAGCGGCAATGGAAGTTCGATGTTAAGATGTGCGCGTATATCTCAAAAGATGCACTCAGTTGCTCTAAGATATTCGATGTCAGAAAAGGCGCTTCAGTTTTTGGAAAGTGGGGTAGATAAGTTGACATGTGAAGTAGAAAATTTACTTAGTCACATAAACTTAAATGGAAATGGAAATGATACCGGTCAATCTTCTGGTTTTTGCAATGGTGCAATGGCAGAAAGTTTAGGCCATTCAGAATCAATGTACAGCGAAGGGGCCTAA
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| Protein seq | MSGPVVPLAWTAQGPCEPSPGSGPLPVSAAASDPPAPSSSVPAGGREPSASGLPPAVTPQLGDHDQGGLPNCVPKVGMTFNSENEAYDFYNSYARNVGFSIRKNHANTRADGSLCSKYFLCSNEGQPVASTTQPGRKKRSSTRSDCKARLQFYISREGIWTVQKVELDHKHYLVSPDKSHMLRSQRRLTPSYQQIVNEMRQEGITAADMQRVFRQWSRGAENVHLLKKDTQRKYLQPSYAQKLLEYLKNKQTENPSFFYAVQLNDDGRIANFFWTDCQAIVDYACFGDVVSFDTTFETNKFEMPFAPFVGTNHHKQPILFGASLIYDESSESFNWLFQTFLTAMSGKQPATIFTDPSAEIIKSVRLVFPNSSHRLCLRHICHNAVKHLNHVICNHPEFLSDFKRRIYEERSVTFFDLKWKELVNAYNLDGNDWMNNLYAMREKWAAVYSRDSFYADMMTIQNAEGTSDALKNFRRKLCLPEFLEEYEKCITSFRQNELEADYNSRQTSPVPYVPDLPMLKTAAESYTRNLYSHFEEEFKKLFTLSCSLLSQDRTISTYKLTPLNSEEEAYVVFNSEDTTVSCSCRMYECTGMLCKHALRVLNYSNIFTFPSHYVYKRWTKYAKAGLFGCRNNSQSGNGSSMLRCARISQKMHSVALRYSMSEKALQFLESGVDKLTCEVENLLSHINLNGNGNDTGQSSGFCNGAMAESLGHSESMYSEGA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0202800 | OsNip_02t0202800-02 | Chr02 | 5753212 | 5753676 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGGCCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCGCCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCCCCCGCGGTGACTCCTCAGCTTGGGGTAATGACCTTTGGTTTGGCTTGA
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| Protein seq | MSGPVVPLAWTAQGPCEPSPGSGPLPVSAAASDPPAPSSSVPAGGREPSASGLPPAVTPQLGVMTFGLA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.969293 | 0.639478 | 4.693256 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0597800 | RBH | 0.999009 | 1.999418 | 1.365252 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g10840 | RBH | 0.576450 | 0.384859 | 1.157583 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0202800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0018080 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0018230 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0000760 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0007720 | RBH | 0.0 | 0.017672 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0007780 | RBH | 3.879005 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0096600 | RBH | 1.875243 | 4.2945215 | 6.2171145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0007720 | RBH | 0.0 | 0.0 | 0.075789 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0100200 | RBH | 2.1321435 | 7.420118 | 7.499758 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0008160 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0007740 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0008040 | RBH | 0.0 | 12.667467 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0008030 | RBH | 0.494092 | 0.090342 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0007790 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G007900 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0007910 | RBH | 0.0 | 0.0 | 0.0 |
