Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0047940 | OGI:01125510 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:43183337-43186962 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctattaaatgtgcccgacacagaattttgtacaccaccatcgtaaagctatcggcttttatataactcaaacacaaaagagagaagacccaacaacctggtccaaagaacatgcaacaaaagaacaaatttcgcactcaatgcagcttatggacaaatatcgatcactccgcacctcctccacaccccaggtcatagcttgctctggaactgcaaaaggaacatcgatttatttcattattatttttgtaaagaacactagggcctgaagttaattttcaaaagtaaatatcgttctggtttcgcccattatgcccaacagacactatcaattccgtcaaggatataatgccaggtaacaacatgcatccccaccagacctttcgacagataaaggtaattccaatcacatggcaagcaaacttggcagctataccctcaccctcctctaaatgcacttgctctaaacaaactagtactcctaatatttcaattccatggagatcagaaaaatacagaaaacaagcaacattgatatagtgattagaaaccagtcatgtcagtagttcggtacaaacggcagttagcttgcaacaactaagggaaacagacctcccccacccccccccccccccaccccaagcaaagcacagacacacatgtgcattctgtagataaaagtgccttacctgagatggtcatagcaagggagttagatatacatacttatattttagagccactaatatgaactaggaaatgaataaatgaagcaatttacttgataattttccaagaaaaaatgtttgtgttaatagctctctgctgtttcctgtcaaaaaaatcaggaaatttcttcaccccatgatagtattaaaaggcatccagtgagaaacaactgacaaagaagtatgaaaatatgaatgaagttaattgtatattacctttctttctaaaatttgtgagcttcacgactggagtagaacattcaaggaaacaatatgtgttctctagagaaaagttcccatgataatacccgttgagaaacagctgttccatcccgtcaaatattcctctgaaacaacattacaaaatcattcacggaagcactactctcaaaattttaacttcactcaacttagtgccaacaaaacagacctcaaaaccatctggagatggggtgacggaagtaagagagttgcaccaacgggggcatgaaaccgagctgttgacaggagcaattgcacatattctgataacacacgagtgtaacgctccatccaggccacattaaaggagctgtcaccaatgataacttccttaataattccaggatgtaatatgttctcatggttacacgatctcattacatttaagcaatgaacatcttctccaatgcccaaattcatgataagctctgcacaatgtcccacattatggggatatcttgctggcagtcttgaaggcatcttcaacctgccagatgcttgttgatgctttagactcagtattgcagaagtcagctcgtacttaatatctatctgcaaattgcaaaattttgtggggtgaagaggttcagcataaaaaggtatcaacattttaaaataggattgcaaatgcacccaagatgtctagcaaccggctgtttctatgtttgaccatgataggtgtttcatttcatgcctttgaacactggcaagtgtgtgaaggccacagactattcagatttcagatacagaggtttgacttaactaaccatgcagaccattgaaatccacagaaaattgactggttccaataaatgaataaggcgacatatacataatagaatatttgtaccttgttccccttatccttagcttctgattgatctgaagtaaaaataaaataaaatgctgaattagagataagattaattgattcagtcttaattatgcacatcctatttctctaagactatctaagagttaaaaaaggattatcttaacttattaccccatggctcagtacaactgtataagtagcaaaagtacaaataaaataccattttgaagagttcttaatggttcacccatgatggttattctggaagctggcgtagcaatcttctgtggtatagaaatctggaaaaaaatgccattccaacataacacatttatttatgaagcaatttgtatgaatatcatagcttggacacatacatactataaagctagaaaagaaacaaaccataaacacctgatatcctgggttaatatcatggaattataatatgctactacaagatttccctgcttgtacttcaatgtgtacatctatcaaatgttatgcagttttttttttttgaataaatcaaatgttatgcagttgctatgtcaattcctagcagcggcataattgagaagccaaattgaaacaagaagtgcaaaccataactagtatttttgagaagtgaatgattaaattttatattgcacagatgtcccagattaacatgttgggttatattcaaattctatggaagtatctagggtctgcaatatgagtctgagttggttacaaaagctgttttcgcacgtgcatactatctcattaagacagattgctcgtgtggatgaatgggtcggtgactagtacaagctaatgcactacaaaagggtaaaaagcatccaaggtcatacgaagtgaccattaaatgtatatgcactacaaacattaattctaaccagcacaggatagaggtggtctcattatagatcctggtttaggatctatagactataatcacccattgagtcaccacatggtttttttttctgcaggtcagcaatgggatctctcaatcagctgacaacaaaaactattttctttaagaagttgcaacaaaacgttttattctatgtgaagaggtacaggcagtcttgacgataatgtgagtaaacggagttggatacaaaacatgaaatttataaaggaatactgactggtatcttaatgacaacctgattgcaaagtatcccaactagtacaaggggccaggaaaaaggaagaactcgaatgcaaaccaaatgaaaaggagtttctgcaagttaagagaagtgtatggcaaaaacatctttactttttataatagtagagaagagataaaccgacacaaggcacacaagatcatcaggagaacaagacaacggcgtaacagcattgggatccaagcgaaatgacaagatttagaccacacggcacgtgaatgtttcacgatttctccgcgtggagagaaaccgatcgatacgcccgagatttctccaccagatcatcatcctcatgagtacaaatcgaatctacattgacattgttgcacaaagccccaaggaaagaagaacaaaaaaggccacctgttggcatgtcacgtgtgctaggaacgcatctatactatacaagtacaaagcacaaggtagttggatctggaagagaagatcatagtcatagtgtctcaccggtgtaagccgcagggcagggcggatggagatgctggccggcggctggtcaggtcttcaaggcggaggcggaggccgccgccgccgccggcggatttttccttttcttttcccctccacctcctctgcagca
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| CDS seq | atgggtgaaccattaagaactcttcaaaatgatcaatcagaagctaaggataaggggaacaagatagatattaagtacgagctgacttctgcaatactgagtctaaagcatcaacaagcatctggcaggttgaagatgccttcaagactgccagcaagatatccccataatgtgggacattgtgcagagcttatcatgaatttgggcattggagaagatgttcattgcttaaatgtaatgagatcgtgtaaccatgagaacatattacatcctggaattattaaggaagttatcattggtgacagctcctttaatgtggcctggatggagcgttacactcgtgtgttatcagaatatgtgcaattgctcctgtcaacagctcggtttcatgcccccgttggtgcaactctcttacttccgtcaccccatctccagatggttttgagaggaatatttgacgggatggaacagctgtttctcaacgggtattatcatgggaacttttctctagagaacacatattgtttccttgaatgttctactccagtcgtgaagctcacaaattttagaaagaaaggaaacagcagagagctattaacacaaacattttttcttggaaaattatcaattccagagcaagctatgacctggggtgtggaggaggtgcggagtgatcgatatttgtccataagctgcattgagtgcgaaatttgttcttttgttgcatgttctttggaccaggttgttgggtcttctctcttttgtgtttga
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| Protein seq | MGEPLRTLQNDQSEAKDKGNKIDIKYELTSAILSLKHQQASGRLKMPSRLPARYPHNVGHCAELIMNLGIGEDVHCLNVMRSCNHENILHPGIIKEVIIGDSSFNVAWMERYTRVLSEYVQLLLSTARFHAPVGATLLLPSPHLQMVLRGIFDGMEQLFLNGYYHGNFSLENTYCFLECSTPVVKLTNFRKKGNSRELLTQTFFLGKLSIPEQAMTWGVEEVRSDRYLSISCIECEICSFVACSLDQVVGSSLFCV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0047940 | OsARC_01g0047940.02 | Chr01 | 43183337 | 43186962 | - | NAM | ||
| CDS seq | atgggtgaaccattaagaactcttcaaaatgatcaatcagaagctaaggataaggggaacaagatagatattaagtacgagctgacttctgcaatactgagtctaaagcatcaacaagcatctggcaggttgaagatgccttcaagactgccagcaagatatccccataatgtgggacattgtgcagagcttatcatgaatttgggcattggagaagatgttcattgcttaaatgtaatgagatcgtgtaaccatgagaacatattacatcctggaattattaaggaagttatcattggtgacagctcctttaatgtggcctggatggagcgttacactcgtgtgttatcagaatatgtgcaattgctcctgtcaacagctcggtttcatgcccccgttggtgcaactctcttacttccgtcaccccatctccagatggttttgagaggaatatttgacgggatggaacagctgtttctcaacgggtattatcatgggaacttttctctagagaacacatattgtttccttgaatgttctactccagtcgtgaagctcacaaattttagaaagaaagttccagagcaagctatgacctggggtgtggaggaggtgcggagtgatcgatatttgtccataagctgcattgagtgcgaaatttgttcttttgttgcatgttctttggaccaggttgttgggtcttctctcttttgtgtttga
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| Protein seq | MGEPLRTLQNDQSEAKDKGNKIDIKYELTSAILSLKHQQASGRLKMPSRLPARYPHNVGHCAELIMNLGIGEDVHCLNVMRSCNHENILHPGIIKEVIIGDSSFNVAWMERYTRVLSEYVQLLLSTARFHAPVGATLLLPSPHLQMVLRGIFDGMEQLFLNGYYHGNFSLENTYCFLECSTPVVKLTNFRKKVPEQAMTWGVEEVRSDRYLSISCIECEICSFVACSLDQVVGSSLFCV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0047940 | OsARC_01g0047940.01 | Chr01 | 43183337 | 43186962 | - | NAM | ||
| CDS seq | atgggtgaaccattaagaactcttcaaaatgatcaatcagaagctaaggataaggggaacaagatagatattaagtacgagctgacttctgcaatactgagtctaaagcatcaacaagcatctggcaggttgaagatgccttcaagactgccagcaagatatccccataatgtgggacattgtgcagagcttatcatgaatttgggcattggagaagatgttcattgcttaaatgtaatgagatcgtgtaaccatgagaacatattacatcctggaattattaaggaagttatcattggtgacagctcctttaatgtggcctggatggagcgttacactcgtgtgttatcagaatatgtgcaattgctcctgtcaacagctcggtttcatgcccccgttggtgcaactctcttacttccgtcaccccatctccagatggttttgagaggaatatttgacgggatggaacagctgtttctcaacgggtattatcatgggaacttttctctagagaacacatattgtttccttgaatgttctactccagtcgtgaagctcacaaattttagaaagaaaggaaacagcagagagctattaacacaaacattttttcttggaaaattatcaattccagagcaagctatgacctggggtgtggaggaggtgcggagtgatcgatatttgtccataagctgcattgagtgcgaaatttgttcttttgttgcatgttctttggaccaggttgttgggtcttctctcttttgtgtttga
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| Protein seq | MGEPLRTLQNDQSEAKDKGNKIDIKYELTSAILSLKHQQASGRLKMPSRLPARYPHNVGHCAELIMNLGIGEDVHCLNVMRSCNHENILHPGIIKEVIIGDSSFNVAWMERYTRVLSEYVQLLLSTARFHAPVGATLLLPSPHLQMVLRGIFDGMEQLFLNGYYHGNFSLENTYCFLECSTPVVKLTNFRKKGNSRELLTQTFFLGKLSIPEQAMTWGVEEVRSDRYLSISCIECEICSFVACSLDQVVGSSLFCV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr01 | 43183545 | 43184280 | - | OsARC_01g0047940.01 | OsARC_01g0047940.02,OsARC_01g0047940.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.012683 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0969700 | RBH | 0.000000 | 0.0 | 2.855104 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g73840 | RBH | 0.000000 | 0.0 | 0.648129 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0969700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0048520 | RBH | 0.000000 | 0.0 | 5.749171 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0048010 | RBH | 0.0 | 0.0 | 2.318265 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0047490 | SBH | 0.0 | 0.0 | 1.216118 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0047750 | RBH | 0.439678 | 0.131857 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0047480 | RBH | 0.0 | 0.000000 | 14.228456 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0703200 | RBH | 1.4936125 | 0.9341345 | 9.868797 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0046950 | RBH | 0.0 | 0.000000 | 1.263876 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0703800 | RBH | 1.47317 | 0.3212535 | 22.920311 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0047620 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0047410 | RBH | 0.175145 | 13.577366 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0047710 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0004670 | RBH | 0.0 | 0.0 | 2.184224 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0047430 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G047760 | RBH | 0.0 | 0.904810 | 2.189855 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0047510 | RBH | 0.0 | 0.805428 | 10.761908 |
