Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0024810 | OGI:01076410 | 8/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:24950508-24952236 | ||||||||
| Gene Symbol | TCL2, OsTCL2 | ||||||||||
| DNA seq | AGGAATATCTCACGTGTGTTCTTTTTATTTTGGGAGCAATGTCAGTTAGACCACAACTATTGCAAAGTATTACAAGGTCACCCGTGGACATTATTTGTTTAGCATCAAAACTGTCACTTCATAACTGATTACATCCTTCTGGGAAATGTTTCCAAACACCAAATTTCCCCTTCAGTGTACTGCTGCAAAATTTAGATTAAGTGATATGAGATTTTTCATCTTCTTTACAGAATAAACATGGTTGCTTGTTTACTTTAGTTACTTCACTTGGTAGTACTATACTGCCTCATTCCTTAAGCAAGTATGATGATGTTGGTCTGGTTTTGTTATTAGCACATCATGCTCTGTGTATATTAATGTAATACACTTTACATTTGGTACAGCAATCTTATAGTTATGCAACTGTGCAATTCCCATTATTGTGAGCCAGCTTGTGATGCAATTCTAATAGATCAAAGAACAATAAATAGTTATGGAATAAACACATTAATTTTGCATTCAGTTTTTCCTCCCCTTTTGCATCAGGCATAAGACTGAGGCAACACAATTTATCTAAATTATAGCCTACTTTTAGGGCCTAAATCCTTTTCTAAAAAAGTTTGCTTCTAAATTGTACGCTACTTTTAGGGCATACACCCTTTTTCCCCCCTTATGTATTCTGGTGCTTTACTGCCCAGAACATTTCTACCTCTTTTGCTGTTCTTCCAGGGATTCTTCCAGCTATAAGTTCCCACCTGCATAACTCCATACAAGGAGCAAAGTTAGGGAACTGCAAATAATGTATTTTTTTGAAACAGACATATGGGTTTCATGAATTTGCCAAACTTCTGAAACAATCATAGTACAAGCTAATAATGTAAAAATACAATTTGTCTTCATTTTCACTTGATGCACATTACAGATATGTAATATGTGTATTAGGATACCTGTTCCCAACAAGCCTGTGCATTCGAAAACGAGATCTTCCTCTTCTTCCGTGAAATGAACAAAATTCTGTGCAGTGTTATTAACTTCTGCAAAATTTATTAAAAAAACTGGTCACCAAAATAAGCAAAATAACTCAGTAGCCAACCATCTCAAATATTTTGCAAACTACTAGCCTCCATTAGAATTTGCAATCTGCCCTGGTGGGGATTTATTCTTATGCTGGAAGCCTGGAAGTAAACAAAGCTGGAATATGCCTTATTCATTATGTTAATCTGTTCCTATTAGCTATCAGGACTGATGATAGGCAACTGATTATCAAGTTTGCATGTATACTTTCTTGCAGTTTATGTAGTTACAAAGTTCCTTGCTACTTTGTGAGTATGCTCTGACTATTACTTCCTGACTTCTCGTTTCTCTTTGTTTTCTCCATTGACATAATCAAGTAAAGCATCAAGATGCAGAATATGACAATATACAGGTTAAATGTCGCTAGGTATTAACTAAATGACACTTCTTCATTTGTTTCCTTATTGAACATGATGATAGGAATTAGGAAATGAAAAAGCTATATACCTATTGTTAAGAGAAGCAAAGGTGAAAAGGCTAACAGGAAACAAACAGAAATTCAAGATATGCAAACCTTTTGTTTCACAACCATCACTGGTTTTGGAATTCTTTCCCTGGCTACCACTGCTGCTATCCATTAGGCGTGAAAAACTCCAATGAAATGCCGAGTTGAGATCTTGTGCTAGCTAAGATCCTCAGACCCTTGTTATGACCTTATGTTTTCTAGGGCCCTTCT
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| CDS seq | ATGGTTGTGAAACAAAAGAAGTTAATAACACTGCACAGAATTTTGTTCATTTCACGGAAGAAGAGGAAGATCTCGTTTTCGAATGCACAGGCTTGTTGGGAACAGGTGGGAACTTATAGCTGGAAGAATCCCTGGAAGAACAGCAAAAGAGGTAGAAATGTTCTGGGCAGTAAAGCACCAGAATACATAAGGGGGGAAAAAGGGTGTATGCCCTAA |
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| Protein seq | MVVKQKKLITLHRILFISRKKRKISFSNAQACWEQVGTYSWKNPWKNSKRGRNVLGSKAPEYIRGEKGCMP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0024810 | OsARC_01g0024810.01 | Chr01 | 24950954 | 24952235 | - | NAM | ||
| CDS seq | ATGGTTGTGAAACAAAAGAAGTTAATAACACTGCACAGAATTTTGTTCATTTCACGGAAGAAGAGGAAGATCTCGTTTTCGAATGCACAGGCTTGTTGGGAACAGGTGGGAACTTATAGCTGGAAGAATCCCTGGAAGAACAGCAAAAGAGGTAGAAATGTTCTGGGCAGTAAAGCACCAGAATACATAAGGGGGGAAAAAGGGTGTATGCCCTAA
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| Protein seq | MVVKQKKLITLHRILFISRKKRKISFSNAQACWEQVGTYSWKNPWKNSKRGRNVLGSKAPEYIRGEKGCMP |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0024810 | OsARC_01g0024810.02 | Chr01 | 24950508 | 24952236 | - | IsoSeq | ||
| CDS seq | ATGGTTGTGAAACAAAAGAAGTTAATAACACTGCACAGAATTTTGTTCATTTCACGGAAGAAGAGGAAGATCTCGTTTTCGAATGCACAGGCTTGTTGGGAACAGGTGGGAACTTATAGCTGGAAGAATCCCTGGAAGAACAGCAAAAGAGTA |
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| Protein seq | MVVKQKKLITLHRILFISRKKRKISFSNAQACWEQVGTYSWKNPWKNSKRV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.175018 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g43230 | RBH | 0.695997 | 1.287525 | 11.446902 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
