Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g43230 | OGI:01076410 | 8/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:24695760-24697913 | ||||||||
| Gene Symbol | TCL2, OsTCL2 | ||||||||||
| DNA seq | ATCTCGAACCTGCATTTCAGACTATATATTTCTCAGGAATGTTTGTTTACAGGTGATGGTGGTAATGCTATCACTGGAAGGGATTTCATTTATTTACTTGATAAGTACAAGCCATCTTTGCAGTGGGATGAGAAAAGTTCAGAGCATTTTTTCGTCTATTCAGATAAAGGTTTGAGACATGCTGTATTCTACCCAACGCTGATGTCCCTTTCTTTACGTTTGGATGAAGCTCAAGATTGGGGAACAGGGCTTTCAATTTGGGAAATTGGGCAAGGTTTGGACTATTTTTTCGATGTTCTTTAGGAATATCTCACGTGTGTTCTTTTTATTTTGGGAGCAATGTCAGTTAGACCACAACTATTGCAAAGTATTACAAGGTCACCCGTGGACATTATTTGTTTAGCATCAAAACTGTCACTTCATAACTGATTACATCCTTCTGGGAAATGTTTCCAAACACCAAATTTCCCCTTCAGTGTACTGCTGCAAAATTTAGATTAAGTGATATGAGATTTTTCATCTTCTTTACAGAATAAACATGGTTGCTTGTTTACTTTAGTTACTTCACTTGGTAGTACTATACTGCCTCATTCCTTAAGCAAGTATGATGATGTTGGTCTGGTTTTGTTATTAGCACATCATGCTCTGTGTATATTAATGTAATACACTTTACATTTGGTACAGCAATCTTATAGTTATGCAACTGTGCAATTCCCATTATTGTGAGCCAGCTTGTGATGCAATTCTAATAGATCAAAGAACAATAAATAGTTATGGAATAAACACATTAATTTTGCATTCAGTTTTTCCTCCCCTTTTGCATCAGGCATAAGACTGAGGCAACACAATTTATCTAAATTATAGCCTACTTTTAGGGCCTAAATCCTTTTCTAAAAAAGTTTGCTTCTAAATTGTACGCTACTTTTAGGGCATACACCCTTTTTCCCCCCTTATGTATTCTGGTGCTTTACTGCCCAGAACATTTCTACCTCTTTTGCTGTTCTTCCAGGGATTCTTCCAGCTATAAGTTCCCACCTGCATAACTCCATACAAGGAGCAAAGTTAGGGAACTGCAAATAATGTATTTTTTTGAAACAGACATATGGGTTTCATGAATTTGCCAAACTTCTGAAACAATCATAGTACAAGCTAATAATGTAAAAATACAATTTGTCTTCATTTTCACTTGATGCACATTACAGATATGTAATATGTGTATTAGGATACCTGTTCCCAACAAGCCTGTGCATTCTGAAAACGAGATCTTCCTCTTCTTCCGTGAAATGAACAAAATTCTGTGCAGTGTTATTAACTTCTGCAAAATTTATTAAAAAAACTGGTCACCAAAATAAGCAAAATAACTCAGTAGCCAACCATCTCAAATATTTTGCAAACTACTAGCCTCCATTAGAATTTGCAATCTGCCCTGGTGGGGATTTATTCTTATGCTGGAAGCCTGGAAGTAAACAAAGCTGGAATATGCCTTATTCATTATGTTAATCTGTTCCTATTAGCTATCAGGACTGATGATAGGCAACTGATTATCAAGTTTGCATGTATACTTTCTTGCAGTTTATGTAGTTACAAAGTTCCTTGCTACTTTGTGAGTATGCTCTGACTATTACTTCCTGACTTCTCGTTTCTCTTTGTTTTCTCCATTGACATAATCAAGTAAAGCATCAAGATGCAGAATATGACAATATACAGGTTAAATGTCGCTAGGTATTAACTAAATGACACTTCTTCATTTGTTTCCTTATTGAACATGATGATAGGAATTAGGAAATGAAAAAGCTATATACCTATTGTTAAGAGAAGCAAAGGTGAAAAGGCTAACAGGAAACAAACAGAAATTCAAGATATGCAAACCTTTTGTTTCACAACCATCACTGGTTTTGGAATTCTTTCCCTGGCTACCACTGCTGCTATCCATTAGGCGTGAAAAACTCCAATGAAATGCCGAGTTGAGATCTTGTGCTAGCTAAGATCCTCAGACCCTTGTTATGACCTTATGTTTTCTAGGGCCCTTCTCTGGGTAAAGATGAGCAAAACTCTGGTTTTTAAAGAGATGGGAGTTGGTAGTCACCTTCTGATCTAGCTGTCCTGAGTACTGACTAATGCTGCTGGCTGTTGGATTTCCCCTAGTCTTCCATT
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| CDS seq | ATGGTTGTGAAACAAAAGAAGTTAATAACACTGCACAGAATTTTGTTCATTTCACGGAAGAAGAGGAAGATCTCGTTTTCAGAATGCACAGGCTTGTTGGGAACAGGTATCCTAATACACATATTACATATCTGTAATGTGCATCAAGTGAAAATGAAGACAAATTGTATTTTTACATTATTAGCTTGTACTATGATTGTTTCAGAAGTTTGGCAAATTCATGAAACCCATATGTCTGTTTCAAAAAAATACATTATTTGCAGTTCCCTAACTTTGCTCCTTGTATGGAGTTATGCAGGTGGGAACTTATAG |
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| Protein seq | MVVKQKKLITLHRILFISRKKRKISFSECTGLLGTGILIHILHICNVHQVKMKTNCIFTLLACTMIVSEVWQIHETHMSVSKKYIICSSLTLLLVWSYAGGNL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g43230 | LOC_Os01g43230.1 | Chr01 | 24695808 | 24697913 | - | MSU_osa1r7 | ||
| CDS seq | ATGGTTGTGAAACAAAAGAAGTTAATAACACTGCACAGAATTTTGTTCATTTCACGGAAGAAGAGGAAGATCTCGTTTTCAGAATGCACAGGCTTGTTGGGAACAGGTATCCTAATACACATATTACATATCTGTAATGTGCATCAAGTGAAAATGAAGACAAATTGTATTTTTACATTATTAGCTTGTACTATGATTGTTTCAGAAGTTTGGCAAATTCATGAAACCCATATGTCTGTTTCAAAAAAATACATTATTTGCAGTTCCCTAACTTTGCTCCTTGTATGGAGTTATGCAGGTGGGAACTTATAG
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| Protein seq | MVVKQKKLITLHRILFISRKKRKISFSECTGLLGTGILIHILHICNVHQVKMKTNCIFTLLACTMIVSEVWQIHETHMSVSKKYIICSSLTLLLVWSYAGGNL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g43230 | LOC_Os01g43230.2 | Chr01 | 24695760 | 24697913 | - | MSU_osa1r7 | ||
| CDS seq | ATGGATAGCAGCAGTGGTAGCCAGGGAAAGAATTCCAAAACCAGTGATGGTTGTGAAACAAAAGAAGTTAATAACACTGCACAGAATTTTGTTCATTTCACGGAAGAAGAGGAAGATCTCGTTTTCAGAATGCACAGGCTTGTTGGGAACAGGTGGGAACTTATAGCTGGAAGAATCCCTGGAAGAACAGCAAAAGAGCAGTACACTGAAGGGGAAATTTGGTGTTTGGAAACATTTCCCAGAAGGATGTAA
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| Protein seq | MDSSSGSQGKNSKTSDGCETKEVNNTAQNFVHFTEEEEDLVFRMHRLVGNRWELIAGRIPGRTAKEQYTEGEIWCLETFPRRM |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g43230 | LOC_Os01g43230.3 | Chr01 | 24695828 | 24697913 | - | MSU_osa1r7 | ||
| CDS seq | ATGGATAGCAGCAGTGGTAGCCAGGGAAAGAATTCCAAAACCAGTGATGGTTGTGAAACAAAAGAAGTTAATAACACTGCACAGAATTTTGTTCATTTCACGGAAGAAGAGGAAGATCTCGTTTTCAGAATGCACAGGCTTGTTGGGAACAGGTGGGAACTTATAGCTGGAAGAATCCCTGGAAGAACAGCAAAAGAGTACACTGAAGGGGAAATTTGGTGTTTGGAAACATTTCCCAGAAGGATGTAA
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| Protein seq | MDSSSGSQGKNSKTSDGCETKEVNNTAQNFVHFTEEEEDLVFRMHRLVGNRWELIAGRIPGRTAKEYTEGEIWCLETFPRRM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.695997 | 1.287525 | 11.446902 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0025500 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0025460 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0024810 | RBH | 0.175018 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0024700 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0024570 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G024840 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0024590 | SBH | 0.0 | 0.0 | 0.0 |
